HISAT2 summary stats: Total pairs: 26875465 Aligned concordantly or discordantly 0 time: 2844314 (10.58%) Aligned concordantly 1 time: 21904725 (81.50%) Aligned concordantly >1 times: 1499630 (5.58%) Aligned discordantly 1 time: 626796 (2.33%) Total unpaired reads: 5688628 Aligned 0 time: 3543507 (62.29%) Aligned 1 time: 1876370 (32.98%) Aligned >1 times: 268751 (4.72%) Overall alignment rate: 93.41%