Comments on: Bioinformatics – Trimmomatic/FASTQC on C.gigas Larvae OA NGS Data http://onsnetwork.org/kubu4/2015/05/06/bioinformatics-trimmomaticfastqc-on-c-gigas-larvae-oa-ngs-data/ University of Washington - Fishery Sciences - Roberts Lab Tue, 09 Apr 2019 18:37:58 +0000 hourly 1 http://wordpress.org/?v=4.0 By: Bioinformatics – Trimmomatic/FASTQC on C.gigas Larvae OA NGS Data | Sam's Notebook http://onsnetwork.org/kubu4/2015/05/06/bioinformatics-trimmomaticfastqc-on-c-gigas-larvae-oa-ngs-data/#comment-781 Fri, 22 May 2015 18:07:22 +0000 http://onsnetwork.org/kubu4/?p=1322#comment-781 […] Previously trimmed the first 39 bases of sequence from reads from the BS-Seq data in an attempt to improve our ability to map the reads back to the C.gigas genome. However, Mac (and Steven) noticed that the last ~10 bases of all the reads showed a steady increase in the %G, suggesting some sort of bias (maybe adaptor??): […]

]]> By: Stranded, sex, and arms still flailing | half-shell http://onsnetwork.org/kubu4/2015/05/06/bioinformatics-trimmomaticfastqc-on-c-gigas-larvae-oa-ngs-data/#comment-648 Mon, 11 May 2015 16:21:14 +0000 http://onsnetwork.org/kubu4/?p=1322#comment-648 […] hurdle overcome in this effort included getting rid of more artifact sequence. Sam cleaned up a file to get us some straight lines then I invoked the -L to get rid of the “G […]

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