Comments on: Computing – Oly BGI GBS Reproducibility Fail (but, less so than last time)… http://onsnetwork.org/kubu4/2017/03/14/computing-oly-bgi-gbs-reproducibility-fail-but-less-so-than-last-time/ University of Washington - Fishery Sciences - Roberts Lab Tue, 09 Apr 2019 18:37:58 +0000 hourly 1 http://wordpress.org/?v=4.0 By: kubu4 http://onsnetwork.org/kubu4/2017/03/14/computing-oly-bgi-gbs-reproducibility-fail-but-less-so-than-last-time/#comment-5015 Thu, 30 Mar 2017 16:10:19 +0000 http://onsnetwork.org/kubu4/?p=2514#comment-5015

Steven decided he didn’t want to spend time doing a full analysis of the data. Instead, we’re going to submit it to the Nature journal Scientific Data, which functions more as a data descriptor and doesn’t want/require a full-blown analysis and interpretation of a given data set. So, we’re depositing the data in the SRA and then using the basic data provided by BGI to serve as an overview of the data contents.

]]> By: Katherine http://onsnetwork.org/kubu4/2017/03/14/computing-oly-bgi-gbs-reproducibility-fail-but-less-so-than-last-time/#comment-4996 Fri, 24 Mar 2017 20:30:17 +0000 http://onsnetwork.org/kubu4/?p=2514#comment-4996 What happened to using ipyrad for the demultiplexing and genotyping? They recently updated the documentation on the jupyter notebook-API implementation, so you could theoretically make a reproducible notebook to provide with the data submission.

]]> By: Computing – Oly BGI GBS Reproducibility; fail? | Sam's Notebook http://onsnetwork.org/kubu4/2017/03/14/computing-oly-bgi-gbs-reproducibility-fail-but-less-so-than-last-time/#comment-4918 Fri, 17 Mar 2017 21:42:07 +0000 http://onsnetwork.org/kubu4/?p=2514#comment-4918 […] so things have improved since the last attempt at getting this BGI script to run and demultiplex the raw […]

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