Comments on: Genome Assembly – Olympia Oyster Redundans with Illumina + PacBio http://onsnetwork.org/kubu4/2017/10/05/genome-assembly-olympia-oyster-redundans-with-illumina-pacbio/ University of Washington - Fishery Sciences - Roberts Lab Tue, 09 Apr 2019 18:37:58 +0000 hourly 1 http://wordpress.org/?v=4.0 By: kubu4 http://onsnetwork.org/kubu4/2017/10/05/genome-assembly-olympia-oyster-redundans-with-illumina-pacbio/#comment-5631 Mon, 09 Oct 2017 15:39:08 +0000 http://onsnetwork.org/kubu4/?p=2759#comment-5631

TL;DR – Redundans/Canu output file (scaffold.reduced.fa) is currently the best genome assembly.

However, the catch is that it’s missing a huge amount of data (the second set of mate-pair reads)…

]]> By: Genome Assembly – Olympia oyster Redundans/Canu vs. Redundans/Racon | Sam's Notebook http://onsnetwork.org/kubu4/2017/10/05/genome-assembly-olympia-oyster-redundans-with-illumina-pacbio/#comment-5630 Mon, 09 Oct 2017 15:33:19 +0000 http://onsnetwork.org/kubu4/?p=2759#comment-5630 […] It should be noted that the paired reads for each of the BGI mate-pair Illumina data did not assemble, just like last time I used them: […]

]]> By: Steven http://onsnetwork.org/kubu4/2017/10/05/genome-assembly-olympia-oyster-redundans-with-illumina-pacbio/#comment-5624 Fri, 06 Oct 2017 02:09:38 +0000 http://onsnetwork.org/kubu4/?p=2759#comment-5624 TLDR?
What is your opinion on where we are on a merger and at this point is it superior?

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