Comments on: Assembly – Geoduck NovaSeq using SparseAssembler (failed) http://onsnetwork.org/kubu4/2018/03/08/assembly-geoduck-novaseq-using-sparseassembler-failed/ University of Washington - Fishery Sciences - Roberts Lab Tue, 09 Apr 2019 18:37:58 +0000 hourly 1 http://wordpress.org/?v=4.0 By: Assembly – SparseAssembler (k 111) on Geoduck Sequence Data | Sam's Notebook http://onsnetwork.org/kubu4/2018/03/08/assembly-geoduck-novaseq-using-sparseassembler-failed/#comment-7057 Tue, 03 Jul 2018 22:48:53 +0000 http://onsnetwork.org/kubu4/?p=3147#comment-7057 […] Well, this is disappointing. Not entirely sure why this is the case, as it’s below the max kmer setting for SparseAssembler. However, I’m not terribly surprised, as this happened previously (only using NovaSeq data) with a kmer setting of 117. […]

]]> By: Assembly – Geoduck NovaSeq using SparseAssembler (TL;DR – it worked!) | Sam's Notebook http://onsnetwork.org/kubu4/2018/03/08/assembly-geoduck-novaseq-using-sparseassembler-failed/#comment-6461 Thu, 22 Mar 2018 16:25:48 +0000 http://onsnetwork.org/kubu4/?p=3147#comment-6461 […] The prior attempt using SparseAssembler failed due to a kmer size that was deemed too large. […]

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