Comments on: Genome Assembly – SparseAssembler Geoduck Genomic Data, kmer=101 http://onsnetwork.org/kubu4/2018/04/05/genome-assembly-sparseassembler-geoduck-genomic-data-kmer101/ University of Washington - Fishery Sciences - Roberts Lab Tue, 09 Apr 2019 18:37:58 +0000 hourly 1 http://wordpress.org/?v=4.0 By: Assembly & Stats – SparseAssembler (k95) on Geoduck Sequence Data > Quast for Stats | Sam's Notebook http://onsnetwork.org/kubu4/2018/04/05/genome-assembly-sparseassembler-geoduck-genomic-data-kmer101/#comment-6801 Thu, 10 May 2018 22:28:53 +0000 http://onsnetwork.org/kubu4/?p=3212#comment-6801 […] Had a successful assembly with SparseAssembler k101, but figured I’d just tweak the kmer setting and throw it in the queue and see how it compares; minimal effort/time needed. […]

]]> By: Kmer Estimation – Kmergenie on Geoduck Sequence Data (default settings) | Sam's Notebook http://onsnetwork.org/kubu4/2018/04/05/genome-assembly-sparseassembler-geoduck-genomic-data-kmer101/#comment-6698 Thu, 19 Apr 2018 21:29:02 +0000 http://onsnetwork.org/kubu4/?p=3212#comment-6698 […] the last SparseAssembler assembly completed, I wanted to do another run with a different kmer size (last time was arbitrarily set at 101). […]

]]> By: Assembly Stats – Quast Stats for Geoduck SparseAssembler Job from 20180405 | Sam's Notebook http://onsnetwork.org/kubu4/2018/04/05/genome-assembly-sparseassembler-geoduck-genomic-data-kmer101/#comment-6674 Sun, 15 Apr 2018 21:33:52 +0000 http://onsnetwork.org/kubu4/?p=3212#comment-6674 […] The geoduck genome assembly started 20180405 completed this weekend. […]

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