Sam's Notebook » HMGP http://onsnetwork.org/kubu4 University of Washington - Fishery Sciences - Roberts Lab Thu, 08 Nov 2018 21:47:12 +0000 en-US hourly 1 http://wordpress.org/?v=4.0 qPCR – C.gigas BB/DH cDNA for PROPS (HMGP primers) http://onsnetwork.org/kubu4/2011/03/21/qpcr-c-gigas-bbdh-cdna-for-props-hmgp-primers/ http://onsnetwork.org/kubu4/2011/03/21/qpcr-c-gigas-bbdh-cdna-for-props-hmgp-primers/#comments Mon, 21 Mar 2011 22:03:25 +0000 http://onsnetwork.org/kubu4/?p=392

Performed qPCR using cDNA from 20110311. This was performed for 2 reps with HMGP (SR IDs:359 & 360). Master mix calcs are here. Plate layout, cycling params, etc can be found in the qPCR Report (see Results).

Results:

qPCR Report (PDF)

qPCR Data File (CFX96)

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qPCR – C.gigas BB/DH cDNA for PROPS http://onsnetwork.org/kubu4/2011/03/14/qpcr-c-gigas-bbdh-cdna-for-props/ http://onsnetwork.org/kubu4/2011/03/14/qpcr-c-gigas-bbdh-cdna-for-props/#comments Mon, 14 Mar 2011 22:12:43 +0000 http://onsnetwork.org/kubu4/?p=398

Performed qPCR using cDNA from 20110311. This was performed for additional reps for TIMP3(BB) (SR IDs:1067 & 1106) and HMGP (SR IDs:359 & 360). Master mix calcs are here. Plate layout, cycling params, etc can be found in the qPCR Report (see Results).

Results:

qPCR Report (PDF)

qPCR Data File (CFX96)

Will analyze with PCR Miner and incorporate with previous PCR rep done for PROPS with these two genes. Oddly, samples in wells B09 and H09 have weird melt curves. As such, these samples will be excluded from analysis.

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qPCR – BB & DH cDNA (from earlier today) http://onsnetwork.org/kubu4/2009/12/23/qpcr-bb-dh-cdna-from-earlier-today/ http://onsnetwork.org/kubu4/2009/12/23/qpcr-bb-dh-cdna-from-earlier-today/#comments Wed, 23 Dec 2009 23:59:14 +0000 http://onsnetwork.org/kubu4/?p=740

qPCR was set up on these cDNAs using HMGP_5’/3′ and SPI_5’/3′ primers. qPCR set up and plate layout can be found here.

Results:

qPCR Data File (Opticon): 20091223_144042.tad

Data workup: PROPS BB_DH Gene Expression Miner Workup

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