In this GitHub Issue, Steven had suggested I try out the minimap/miniasm/racon pipeline for assembling our Olympia oyster PacBio data.

I followed the pipeline described by this paper: https://matzlab.weebly.com/uploads/7/6/2/2/76229469/racon.pdf.

Previously, ran the first part of the pipeline: minimap

This notebook entry just contains the miniasm execution. Will follow with racon.

Jupyter Notebook (GitHub): 20170918_docker_pacbio_oly_miniasm0.2.ipynb