Steven asked to subset geoduck assembly in to >10kbp and >30kbp groups. Here are the commands, using faidx:

>10kbp subsetting

faidx --size-range 10000,1000000000 Pgenerosa_v070.fa > Pgenerosa_v071.fasta

Index new FastA

faidx Pgenerosa_v071.fasta

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>30kbp subsetting

faidx --size-range 30000,1000000000 Pgenerosa_v070.fa > Pgenerosa_v073.fasta

Index new FastA

faidx Pgenerosa_v073.fasta

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MD5 checksums

35b6b653b543ebb7f3631e68523ab595 Pgenerosa_v071.fasta ce81a0fc127e6cc0cbf216eb85b87749 Pgenerosa_v073.fasta

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All files were copied to our genomic databank on Owl.

See our Genomic Resources wiki (GitHub) for a more concise overview.