Since the MAKER genome annotation of our Pgenerosa_v070 genome assembly finally completed last week, I decided to separate out the various features into separate GFF files, as I’m sure we’ll need/want them at some point. This was all done in a Jupyter Notebook on my computer (swoose) - see notebook linked below.

Created GFF files for:

• CDS (169,461 features)
• exons (175,007 features)
• genes (53,036 features)
• mRNAs (53,036 features)

Files were rsync‘d to (each one is linked above):

• http://owl.fish.washington.edu/halfshell/genomic-databank/

Jupyter Notebook (GitHub):

20190523_pgen_Pgenerosa_v070_gffs.ipynb

Will add these files to our Genomic Resources Wiki.