After a meeting today, Steven and Hollie realized that the Bismark coverage files were still using the old scaffold names, stemming from the Pgenerosa_v074 naming. I’d previously updated filenames and scaffold names, so I recycled some of the code used there to rename the coverage files.

The renaming was done in the following Jupyter Notebook (GitHub):

• 20191120_swoose_pgen_v074_renaming.ipynb

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RESULTS

Output folder:

• 20191120_swoose_pgen_v074_renaming/

All files have also been uploaded to the bismark_coverage_files folder in the OSF repository for this project.