Sigenae version 8
http://aquacul4.fish.washington.edu/~steven/filefish/cgigas_all_contigs_v8.



oyster_v9_gene
http://aquacul4.fish.washington.edu/~steven/armina/oyster_v9_gene.fasta



./blastn -num_threads 16 -out /Volumes/web/cnidarian/osysterv9_blastn_sigenae8_out -db /Users/admin/Dropbox/Cluster/BLAST/db/cgigas_all_contigs_v8.fa -query /Users/admin/Dropbox/Cluster/BLAST/query/oyster_v9_gene.fasta -outfmt 6 -max_target_seqs 1 -task blastn


http://eagle.fish.washington.edu/cnidarian/osysterv9_blastn_sigenae8_out

osysterv9_blastn_sigenae8_out.txt

I suggest taking the sigenae that have matches less then 1E-75



Said fasta---
has 16,673 sequences

sigenaev8_genome_1E75.fasta





Experiment of "better backbone"

2 fold 

QC



features





PCA