Working through the GBS data, I wanted to leave a trace of a workflow that will be improved upon (I used the wrong cut site) as well as results for comparison. Only one end of the 96 files (ie samples) was used. Here is the notebook and output directory. Requisite screenshot:
Posts Categorized: Snippit
Created a gtf based on Cuffdiff gene expression…
Created a gtf based on Cuffdiff gene expression output. Available @ http://owl.fish.washington.edu/halfshell/bu-data-genomic/tentacle/Cuffdiff_geneexp.sig.gtf
Github Activity
- sr320 commented on issue RobertsLab/project-oyster-oa#18 October 15, 2017
- sr320 pushed to master at sr320/talk-ae-2017 October 13, 2017
- sr320 pushed to master at sr320/talk-ae-2017 October 12, 2017
- sr320 commented on issue RobertsLab/resources#98 October 12, 2017
- sr320 commented on issue RobertsLab/resources#97 October 12, 2017
- sr320 opened issue RobertsLab/resources#96 October 12, 2017
- sr320 commented on issue RobertsLab/project-oyster-oa#18 October 12, 2017
iPlant Activity
- DE: TopHat2-PE_analysis1 status changed. April 15, 2016
- DE: TopHat2-PE_analysis1 status changed. April 14, 2016
- DE: SAM_to_BAM_format_conversion_analysis1 status changed. March 22, 2016
- DE: Bowtie-2.2.1--Build-and-Map_analysis1 status changed. March 22, 2016
- DE: Bowtie-2.2.1_Bowtie2-Build_indexer_analysis1 status changed. March 21, 2016
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