C30526 1477 1478 DML_lin C30526 WUBlastX DNA_TcMar-Tc2 1439 2503 822 - . . C30526 1483 1484 DML_lin C30526 WUBlastX DNA_TcMar-Tc2 1439 2503 822 - . . C30526 2036 2037 DML_lin C30526 WUBlastX DNA_TcMar-Tc2 1439 2503 822 - . . C30526 2522 2523 DML_lin C30526 WUBlastX DNA_TcMar-Tc2 2452 2679 91 - . . C30526 2522 2523 DML_lin C30526 WUBlastX DNA_TcMar-Tc2 2452 2640 106 - . . C31762 6876 6877 DML_lin C31762 WUBlastX LINE_L1-Tx1 6767 7456 316 - . . C34218 3108 3109 DML_lin C34218 TRF Tandem_Repeat 3083 3154 62 + . . scaffold1014 551990 551991 DML_lin scaffold1014 WUBlastX DNA_TcMar-Fot1 551523 552275 104 + . . scaffold1014 551990 551991 DML_lin scaffold1014 WUBlastX DNA_TcMar-Fot1 551529 552440 48 + . . scaffold1035 10327 10328 DML_lin scaffold1035 WUBlastX LINE_L1-Tx1 10169 10495 110 - . . scaffold1035 57157 57158 DML_lin scaffold1035 TRF Tandem_Repeat 56685 57438 1126 + . . scaffold1054 34942 34943 DML_lin scaffold1054 WUBlastX LINE_L1-Tx1 34443 36254 600 + . . scaffold1123 164524 164525 DML_lin scaffold1123 WUBlastX DNA_TcMar-Marin 164429 164998 165 + . . scaffold1149 586504 586505 DML_lin scaffold1149 WUBlastX RC_Helitron 585612 588923 1878 - . . scaffold1188 79511 79512 DML_lin scaffold1188 WUBlastX LINE_R2-Hero 78711 81929 2619 - . . scaffold1227 211125 211126 DML_lin scaffold1227 WUBlastX DNA_Kolobok-Hyd 210664 211233 65 + . . scaffold123 141296 141297 DML_lin scaffold123 WUBlastX RC_Helitron 141292 142239 20 + . . scaffold123 141296 141297 DML_lin scaffold123 WUBlastX RC_Helitron 141259 141879 66 + . . scaffold123 141296 141297 DML_lin scaffold123 WUBlastX RC_Helitron 141241 142008 49 + . . scaffold1315 269940 269941 DML_lin scaffold1315 WUBlastX LTR_Gypsy-Cigr 268816 271404 1481 - . . scaffold1352 334374 334375 DML_lin scaffold1352 WUBlastX LINE_L1 333934 334632 278 - . . scaffold1352 334374 334375 DML_lin scaffold1352 WUBlastX LINE_L1-Tx1 334045 334632 347 - . . scaffold1354 110369 110370 DML_lin scaffold1354 TRF Tandem_Repeat 110273 110605 386 + . . scaffold142 982300 982301 DML_lin scaffold142 WUBlastX DNA_MuDR 980749 982617 440 + . . scaffold1448 194149 194150 DML_lin scaffold1448 WUBlastX LTR_Gypsy 191636 195115 2993 - . . scaffold1456 23700 23701 DML_lin scaffold1456 WUBlastX LTR_Gypsy-Cigr 22276 24459 1540 + . . scaffold1456 23709 23710 DML_lin scaffold1456 WUBlastX LTR_Gypsy-Cigr 22276 24459 1540 + . . scaffold1462 3410 3411 DML_lin scaffold1462 TRF Tandem_Repeat 3066 3797 580 + . . scaffold1462 3410 3411 DML_lin scaffold1462 TRF Tandem_Repeat 3061 3645 1026 + . . scaffold1476 116084 116085 DML_lin scaffold1476 TRF Tandem_Repeat 115805 116117 339 + . . scaffold1489 64924 64925 DML_lin scaffold1489 WUBlastX RC_Helitron 64458 70424 2978 - . . scaffold1489 70081 70082 DML_lin scaffold1489 WUBlastX DNA_Helitron 67890 71072 1724 - . . scaffold1489 70081 70082 DML_lin scaffold1489 WUBlastX RC_Helitron 69762 71834 304 - . . scaffold1489 70081 70082 DML_lin scaffold1489 WUBlastX RC_Helitron 64458 70424 2978 - . . scaffold1489 70081 70082 DML_lin scaffold1489 WUBlastX RC_Helitron 65145 70205 3204 - . . scaffold1489 70091 70092 DML_lin scaffold1489 WUBlastX DNA_Helitron 67890 71072 1724 - . . scaffold1489 70091 70092 DML_lin scaffold1489 WUBlastX RC_Helitron 69762 71834 304 - . . scaffold1489 70091 70092 DML_lin scaffold1489 WUBlastX RC_Helitron 64458 70424 2978 - . . scaffold1489 70091 70092 DML_lin scaffold1489 WUBlastX RC_Helitron 65145 70205 3204 - . . scaffold1490 202236 202237 DML_lin scaffold1490 WUBlastX DNA_NOF 202186 202485 213 + . . scaffold1527 134936 134937 DML_lin scaffold1527 TRF Tandem_Repeat 134878 135097 327 + . . scaffold1532 608888 608889 DML_lin scaffold1532 WUBlastX DNA_PiggyBac 608872 608943 25 - . . scaffold1578 37185 37186 DML_lin scaffold1578 WUBlastX LTR_DIRS 36366 37310 614 - . . scaffold1578 37185 37186 DML_lin scaffold1578 WUBlastX LTR_DIRS 37017 37598 268 - . . scaffold1578 37295 37296 DML_lin scaffold1578 WUBlastX LTR_DIRS 36366 37310 614 - . . scaffold1578 37295 37296 DML_lin scaffold1578 WUBlastX LTR_DIRS 37017 37598 268 - . . scaffold1583 538966 538967 DML_lin scaffold1583 WUBlastX LTR_DIRS 538914 539948 119 + . . scaffold1583 538966 538967 DML_lin scaffold1583 WUBlastX LTR_Copia 538587 539231 38 + . . scaffold1593 121 122 DML_lin scaffold1593 WUBlastX DNA_IS 22 1239 2000 - . . scaffold1663 108463 108464 DML_lin scaffold1663 WUBlastX DNA_MuDR 108033 108587 62 - . . scaffold1663 108463 108464 DML_lin scaffold1663 WUBlastX DNA_MuDR 108075 108521 178 - . . scaffold172 117025 117026 DML_lin scaffold172 WUBlastX LTR_DIRS 116324 117271 138 + . . scaffold1741 20669 20670 DML_lin scaffold1741 WUBlastX RC_Helitron 19594 24891 3183 - . . scaffold1742 211658 211659 DML_lin scaffold1742 TRF Tandem_Repeat 211604 211705 116 + . . scaffold1749 39605 39606 DML_lin scaffold1749 WUBlastX LTR_Gypsy 38530 42471 2225 + . . scaffold1749 39634 39635 DML_lin scaffold1749 WUBlastX LTR_Gypsy 38530 42471 2225 + . . scaffold1836 145404 145405 DML_lin scaffold1836 WUBlastX LTR_Pao 142933 145704 1870 - . . scaffold1836 148290 148291 DML_lin scaffold1836 WUBlastX LTR_Pao 145694 148462 1282 - . . scaffold1836 148438 148439 DML_lin scaffold1836 WUBlastX LTR_Pao 145694 148462 1282 - . . scaffold209 216777 216778 DML_lin scaffold209 WUBlastX LTR_Pao 215952 217175 153 - . . scaffold209 216777 216778 DML_lin scaffold209 WUBlastX LTR_Pao 215952 217406 149 - . . scaffold209 216777 216778 DML_lin scaffold209 WUBlastX LTR_Pao 215949 216965 254 - . . scaffold209 216807 216808 DML_lin scaffold209 WUBlastX LTR_Pao 215952 217175 153 - . . scaffold209 216807 216808 DML_lin scaffold209 WUBlastX LTR_Pao 215952 217406 149 - . . scaffold209 216807 216808 DML_lin scaffold209 WUBlastX LTR_Pao 215949 216965 254 - . . scaffold209 216814 216815 DML_lin scaffold209 WUBlastX LTR_Pao 215952 217175 153 - . . scaffold209 216814 216815 DML_lin scaffold209 WUBlastX LTR_Pao 215952 217406 149 - . . scaffold209 216814 216815 DML_lin scaffold209 WUBlastX LTR_Pao 215949 216965 254 - . . scaffold241 283339 283340 DML_lin scaffold241 WUBlastX LTR_Gypsy 282950 284554 769 + . . scaffold241 283348 283349 DML_lin scaffold241 WUBlastX LTR_Gypsy 282950 284554 769 + . . scaffold271 476209 476210 DML_lin scaffold271 WUBlastX LINE_CR1-L2 476155 476328 70 + . . scaffold3 296705 296706 DML_lin scaffold3 WUBlastX LTR_Gypsy-Cigr 296294 296779 77 + . . scaffold338 254518 254519 DML_lin scaffold338 WUBlastX LINE_L2 254221 254787 42 + . . scaffold338 254518 254519 DML_lin scaffold338 WUBlastX LINE_RTE-X 254323 255909 517 + . . scaffold338 254529 254530 DML_lin scaffold338 WUBlastX LINE_L2 254221 254787 42 + . . scaffold338 254529 254530 DML_lin scaffold338 WUBlastX LINE_RTE-X 254323 255909 517 + . . scaffold33832 13692 13693 DML_lin scaffold33832 TRF Tandem_Repeat 13687 13741 69 + . . scaffold33832 13697 13698 DML_lin scaffold33832 TRF Tandem_Repeat 13687 13741 69 + . . scaffold33832 13702 13703 DML_lin scaffold33832 TRF Tandem_Repeat 13687 13741 69 + . . scaffold33832 13740 13741 DML_lin scaffold33832 TRF Tandem_Repeat 13687 13741 69 + . . scaffold34 298235 298236 DML_lin scaffold34 WUBlastX LINE_Penelope 298080 298712 186 - . . scaffold37532 12144 12145 DML_lin scaffold37532 WUBlastX DNA_hAT-Blackja 12058 12264 58 + . . scaffold37532 12144 12145 DML_lin scaffold37532 WUBlastX DNA_hAT-Blackja 12097 12306 67 + . . scaffold38290 2343 2344 DML_lin scaffold38290 WUBlastX LTR_Copia 2259 6356 388 + . . scaffold38290 5770 5771 DML_lin scaffold38290 WUBlastX LTR_Copia 4965 6407 973 + . . scaffold38290 5770 5771 DML_lin scaffold38290 WUBlastX LTR_Copia 4695 6407 904 + . . scaffold38290 5770 5771 DML_lin scaffold38290 WUBlastX LTR_Copia 2259 6356 388 + . . scaffold392 897112 897113 DML_lin scaffold392 WUBlastX DNA_Kolobok 896988 897230 111 - . . scaffold39268 52073 52074 DML_lin scaffold39268 WUBlastX DNA_En-Spm 51125 52084 24 - . . scaffold394 578867 578868 DML_lin scaffold394 TRF Tandem_Repeat 578651 579050 457 + . . scaffold4 649757 649758 DML_lin scaffold4 WUBlastX LINE_L2 649353 650228 100 + . . scaffold4 649757 649758 DML_lin scaffold4 WUBlastX LINE_L2 649560 650450 199 + . . scaffold41568 88412 88413 DML_lin scaffold41568 WUBlastX LTR_Gypsy 86151 88502 1891 + . . scaffold41568 88412 88413 DML_lin scaffold41568 WUBlastX LTR_Gypsy 86871 89534 636 + . . scaffold41652 84532 84533 DML_lin scaffold41652 TRF Tandem_Repeat 84210 84872 898 + . . scaffold41834 127784 127785 DML_lin scaffold41834 WUBlastX RC_Helitron 127720 128313 369 + . . scaffold42790 159095 159096 DML_lin scaffold42790 WUBlastX LTR_Gypsy 159000 159830 242 + . . scaffold42790 159095 159096 DML_lin scaffold42790 WUBlastX LTR_Gypsy 159000 159452 288 + . . scaffold42790 159095 159096 DML_lin scaffold42790 WUBlastX LTR_Gypsy 159000 159665 258 + . . scaffold43388 219751 219752 DML_lin scaffold43388 WUBlastX DNA_IS4EU 219717 219797 27 - . . scaffold482 138872 138873 DML_lin scaffold482 WUBlastX DNA_Kolobok-IS4 138840 139592 162 + . . scaffold482 138872 138873 DML_lin scaffold482 WUBlastX DNA_IS4EU 138735 139637 121 + . . scaffold527 145622 145623 DML_lin scaffold527 TRF Tandem_Repeat 145425 145649 378 + . . scaffold532 46439 46440 DML_lin scaffold532 TRF Tandem_Repeat 45305 46705 2349 + . . scaffold532 46439 46440 DML_lin scaffold532 TRF Tandem_Repeat 45306 46708 2382 + . . scaffold541 558295 558296 DML_lin scaffold541 TRF Tandem_Repeat 558118 558349 396 + . . scaffold541 558295 558296 DML_lin scaffold541 TRF Tandem_Repeat 557808 558336 573 + . . scaffold562 443389 443390 DML_lin scaffold562 WUBlastX LTR_Gypsy 442265 443617 831 + . . scaffold562 443392 443393 DML_lin scaffold562 WUBlastX LTR_Gypsy 442265 443617 831 + . . scaffold58 571236 571237 DML_lin scaffold58 WUBlastX LTR_Gypsy 570806 571636 58 - . . scaffold58 571236 571237 DML_lin scaffold58 WUBlastX LTR_Gypsy 571010 571918 57 - . . scaffold58 571236 571237 DML_lin scaffold58 WUBlastX LTR_Gypsy 571115 571660 161 - . . scaffold601 132778 132779 DML_lin scaffold601 TRF Tandem_Repeat 131579 134528 2413 + . . scaffold602 87051 87052 DML_lin scaffold602 WUBlastX LTR_Gypsy 86591 87124 161 + . . scaffold602 87051 87052 DML_lin scaffold602 WUBlastX LTR_Gypsy 86330 87247 113 + . . scaffold602 87051 87052 DML_lin scaffold602 WUBlastX LTR_Gypsy 86600 87337 113 + . . scaffold619 621709 621710 DML_lin scaffold619 WUBlastX DNA_hAT-hATw 621597 624350 689 + . . scaffold619 621731 621732 DML_lin scaffold619 WUBlastX DNA_hAT-hATw 621597 624350 689 + . . scaffold619 623845 623846 DML_lin scaffold619 WUBlastX DNA_hAT-hATw 621597 624350 689 + . . scaffold630 219250 219251 DML_lin scaffold630 WUBlastX LINE_L1 216952 219537 279 - . . scaffold630 219250 219251 DML_lin scaffold630 WUBlastX LINE_L1-Tx1 217312 219465 608 - . . scaffold672 130686 130687 DML_lin scaffold672 WUBlastX DNA_MuDR 130455 132092 665 + . . scaffold721 378853 378854 DML_lin scaffold721 TRF Tandem_Repeat 378796 379228 625 + . . scaffold77 411001 411002 DML_lin scaffold77 WUBlastX LTR_Gypsy 410567 412702 1406 + . . scaffold77 411005 411006 DML_lin scaffold77 WUBlastX LTR_Gypsy 410567 412702 1406 + . . scaffold77 411115 411116 DML_lin scaffold77 WUBlastX LTR_Gypsy 410567 412702 1406 + . . scaffold773 175267 175268 DML_lin scaffold773 WUBlastX LTR_Pao 170964 176408 2249 - . . scaffold852 66846 66847 DML_lin scaffold852 WUBlastX LTR_Gypsy-Cigr 66717 69767 2144 - . . scaffold852 66846 66847 DML_lin scaffold852 WUBlastX LTR_Gypsy 66714 70346 1793 - . . scaffold852 66846 66847 DML_lin scaffold852 WUBlastX LTR_Gypsy 66624 67109 27 - . . scaffold86 1352881 1352882 DML_lin scaffold86 WUBlastX DNA_Kolobok-Hyd 1352593 1353180 47 - . . scaffold86 1352881 1352882 DML_lin scaffold86 WUBlastX DNA_Kolobok-Hyd 1352824 1353174 53 - . . scaffold86 203460 203461 DML_lin scaffold86 WUBlastX LTR_Pao 200986 205353 2885 + . . scaffold86 203473 203474 DML_lin scaffold86 WUBlastX LTR_Pao 200986 205353 2885 + . . scaffold86 203717 203718 DML_lin scaffold86 WUBlastX LTR_Pao 200986 205353 2885 + . . scaffold880 337895 337896 DML_lin scaffold880 TRF Tandem_Repeat 337859 338282 468 + . . scaffold880 337895 337896 DML_lin scaffold880 TRF Tandem_Repeat 337868 338286 533 + . . scaffold880 337895 337896 DML_lin scaffold880 TRF Tandem_Repeat 337868 338286 570 + . . scaffold885 13971 13972 DML_lin scaffold885 WUBlastX DNA_Kolobok 13765 14010 136 - . . scaffold885 13977 13978 DML_lin scaffold885 WUBlastX DNA_Kolobok 13765 14010 136 - . . scaffold968 140888 140889 DML_lin scaffold968 WUBlastX LTR_Copia 139375 141270 1143 - . . scaffold992 63289 63290 DML_lin scaffold992 TRF Tandem_Repeat 63166 63466 235 + . .