Files to upload: 
["/var/lib/condor/iplant-de-jobs/sr320/jca8010e4-3bb9-457f-8f34-691cf6a88432/logs/imkdir-stderr"
 "/var/lib/condor/iplant-de-jobs/sr320/jca8010e4-3bb9-457f-8f34-691cf6a88432/logs/condor-stderr-0"
 "/var/lib/condor/iplant-de-jobs/sr320/jca8010e4-3bb9-457f-8f34-691cf6a88432/logs/imkdir-stdout"
 "/var/lib/condor/iplant-de-jobs/sr320/jca8010e4-3bb9-457f-8f34-691cf6a88432/logs/condor-stdout-0"
 "/var/lib/condor/iplant-de-jobs/sr320/jca8010e4-3bb9-457f-8f34-691cf6a88432/logs/output-last-stderr"
 "/var/lib/condor/iplant-de-jobs/sr320/jca8010e4-3bb9-457f-8f34-691cf6a88432/logs/output-last-stdout"]
 
Paths to check: 
("/var/lib/condor/iplant-de-jobs/sr320/jca8010e4-3bb9-457f-8f34-691cf6a88432/logs/imkdir-stderr"
 "/var/lib/condor/iplant-de-jobs/sr320/jca8010e4-3bb9-457f-8f34-691cf6a88432/logs/condor-stderr-0"
 "/var/lib/condor/iplant-de-jobs/sr320/jca8010e4-3bb9-457f-8f34-691cf6a88432/logs/imkdir-stdout"
 "/var/lib/condor/iplant-de-jobs/sr320/jca8010e4-3bb9-457f-8f34-691cf6a88432/logs/condor-stdout-0"
 "/var/lib/condor/iplant-de-jobs/sr320/jca8010e4-3bb9-457f-8f34-691cf6a88432/logs/output-last-stderr"
 "/var/lib/condor/iplant-de-jobs/sr320/jca8010e4-3bb9-457f-8f34-691cf6a88432/logs/output-last-stdout"
 "/var/lib/condor/.irods"
 "/var/lib/condor/.irods/.irodsA"
 "/var/lib/condor/.irods/.irodsEnv"
 "/usr/local2/bin/imkdir"
 "/usr/local2/bin/iput"
 "/usr/local2/bin/ils")
================================================================================ 
env: 
{"irodsAuthFileName" "/var/lib/condor/.irods/.irodsA",
 "irodsEnvFile" "/var/lib/condor/.irods/.irodsEnv",
 "clientUserName" "sr320"}
 
command:
/usr/local2/bin/imkdir -p /iplant/home/sr320/analyses/SOAP_fish545_PEassembly-2013-01-24-11-47-11.901/logs
 
================================================================================ 
env: 
{"irodsAuthFileName" "/var/lib/condor/.irods/.irodsA",
 "irodsEnvFile" "/var/lib/condor/.irods/.irodsEnv",
 "clientUserName" "sr320"}
 
command:
/usr/local2/bin/iput -f -P /var/lib/condor/iplant-de-jobs/sr320/jca8010e4-3bb9-457f-8f34-691cf6a88432/logs/output-last-stdout /iplant/home/sr320/analyses/SOAP_fish545_PEassembly-2013-01-24-11-47-11.901/logs/output-last-stdout