##gff-version 3 ##fileformat=VCFv4.1 ##samtoolsVersion=0.1.18 (r982:295) ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= scaffold1 SAMTools SNP 34694 34694 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold100 SAMTools SNP 81987 81987 26.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D20%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C14:17 scaffold100 SAMTools SNP 81988 81988 33.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D20%3BFQ%3D-31%3BPV4%3D1%2C0.31%2C1%2C9.7e-09;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C4%2C0:7 scaffold100 SAMTools SNP 287634 287634 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold100 SAMTools SNP 718694 718694 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.18%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold100 SAMTools SNP 718696 718696 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold100 SAMTools SNP 796202 796202 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C8%3BMQ%3D20%3BFQ%3D18.9%3BPV4%3D1%2C0.0087%2C1%2C3.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C46:49 scaffold1000 SAMTools SNP 26260 26260 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1000 SAMTools SNP 26353 26353 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1000 SAMTools SNP 266365 266365 18.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold1004 SAMTools SNP 436113 436113 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1009 SAMTools SNP 159239 159239 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1009 SAMTools SNP 984660 984660 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0182%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1009 SAMTools SNP 1003732 1003732 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1009 SAMTools SNP 1462230 1462230 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.048%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1009 SAMTools SNP 1598507 1598507 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C8%3BMQ%3D20%3BFQ%3D6.98%3BPV4%3D1%2C9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C60:33 scaffold1009 SAMTools SNP 1598519 1598519 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C7%3BMQ%3D20%3BFQ%3D16.1%3BPV4%3D1%2C0.0069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C64:46 scaffold1009 SAMTools SNP 1598529 1598529 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C1.8e-07%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C33:36 scaffold1009 SAMTools SNP 1688374 1688374 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-3.03%3BPV4%3D1%2C0.00017%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C27:30 scaffold101 SAMTools SNP 310411 310411 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1014 SAMTools SNP 199032 199032 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1016 SAMTools SNP 396557 396557 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1017 SAMTools SNP 106383 106383 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1017 SAMTools SNP 107090 107090 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C46:46 scaffold1017 SAMTools SNP 111945 111945 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1017 SAMTools SNP 111947 111947 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1017 SAMTools SNP 371028 371028 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1017 SAMTools SNP 571634 571634 17.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.34%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1017 SAMTools SNP 571635 571635 17.7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.0051%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1017 SAMTools SNP 747568 747568 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1017 SAMTools SNP 747582 747582 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1017 SAMTools SNP 958466 958466 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1017 SAMTools SNP 959811 959811 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1018 SAMTools SNP 194917 194917 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C60%2C0%3BMQ%3D20%3BFQ%3D-122%3BPV4%3D1%2C0.088%2C1%2C9.4e-11;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C95%2C0:99 scaffold1018 SAMTools SNP 194921 194921 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C0%2C46%2C0%3BMQ%3D20%3BFQ%3D15.4%3BPV4%3D1%2C0.44%2C1%2C1.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C50:45 scaffold102 SAMTools SNP 854831 854831 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold102 SAMTools SNP 854921 854921 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold102 SAMTools SNP 932722 932722 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D4.28%3BPV4%3D1%2C0.0015%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C34:30 scaffold102 SAMTools SNP 1036884 1036884 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold102 SAMTools SNP 1087970 1087970 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D20%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C36%2C0:69 scaffold102 SAMTools SNP 1088008 1088008 33.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D20%3BFQ%3D-31%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C4%2C0:7 scaffold102 SAMTools SNP 1096049 1096049 24.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.054%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold102 SAMTools SNP 1096051 1096051 24.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold102 SAMTools SNP 1096054 1096054 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C0.43%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C54:37 scaffold102 SAMTools SNP 1096073 1096073 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D20.9%3BPV4%3D1%2C0.034%2C1%2C5.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C64:51 scaffold102 SAMTools SNP 1096624 1096624 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D15.1%3BPV4%3D1%2C0.091%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C63:44 scaffold102 SAMTools SNP 1476319 1476319 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C18%3BMQ%3D20%3BFQ%3D28.8%3BPV4%3D1%2C0.0014%2C1%2C4.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C57:59 scaffold102 SAMTools SNP 1476320 1476320 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C16%3BMQ%3D20%3BFQ%3D29.9%3BPV4%3D1%2C2e-05%2C1%2C3.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C59:60 scaffold102 SAMTools SNP 1535939 1535939 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold102 SAMTools SNP 1596294 1596294 7.82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0000%3BAF1%3D0.5031%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C44%3BMQ%3D20%3BFQ%3D-8.69%3BPV4%3D1%2C4.8e-34%2C1%2C2.4e-28;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C19:23 scaffold1021 SAMTools SNP 12099 12099 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C12%2C0%3BMQ%3D20%3BFQ%3D20.9%3BPV4%3D1%2C0.00052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C48:51 scaffold1021 SAMTools SNP 382269 382269 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1024 SAMTools SNP 247173 247173 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1024 SAMTools SNP 1261459 1261459 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1024 SAMTools SNP 1271389 1271389 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1024 SAMTools SNP 1336215 1336215 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C0.0077%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C54:37 scaffold1024 SAMTools SNP 1337418 1337418 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1024 SAMTools SNP 1337420 1337420 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1028 SAMTools SNP 121067 121067 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1028 SAMTools SNP 138373 138373 8.93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0010%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.12%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1028 SAMTools SNP 204974 204974 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1028 SAMTools SNP 205008 205008 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0149%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1031 SAMTools SNP 169527 169527 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1032 SAMTools SNP 41672 41672 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1032 SAMTools SNP 244095 244095 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1032 SAMTools SNP 244096 244096 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1032 SAMTools SNP 307512 307512 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C9.5e-05%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C19:22 scaffold1032 SAMTools SNP 401654 401654 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0023%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1032 SAMTools SNP 445212 445212 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1032 SAMTools SNP 538447 538447 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0013%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold1032 SAMTools SNP 538448 538448 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0014%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold1032 SAMTools SNP 538451 538451 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D23.8%3BPV4%3D1%2C0.029%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C52:54 scaffold1036 SAMTools SNP 116928 116928 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1037 SAMTools SNP 286695 286695 18.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C0:3 scaffold1037 SAMTools SNP 286696 286696 17.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1037 SAMTools SNP 290056 290056 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D19%3BFQ%3D5.17%3BPV4%3D1%2C0.1%2C1%2C5.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C31:34 scaffold1037 SAMTools SNP 358445 358445 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1041 SAMTools SNP 287533 287533 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1041 SAMTools SNP 287534 287534 5.29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1041 SAMTools SNP 339582 339582 6.99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0010%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1041 SAMTools SNP 339583 339583 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.034%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold105 SAMTools SNP 10214 10214 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D15%3BPV4%3D1%2C0.00049%2C1%2C2.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C57:44 scaffold105 SAMTools SNP 10215 10215 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D20.9%3BPV4%3D1%2C9.9e-06%2C1%2C2.5e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C48:51 scaffold105 SAMTools SNP 18092 18092 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold105 SAMTools SNP 18094 18094 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold105 SAMTools SNP 139909 139909 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold105 SAMTools SNP 318268 318268 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold105 SAMTools SNP 408741 408741 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1050 SAMTools SNP 13295 13295 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C20%3BMQ%3D19%3BFQ%3D24.5%3BPV4%3D1%2C0.00098%2C1%2C8.6e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C52:55 scaffold1050 SAMTools SNP 13296 13296 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C14%3BMQ%3D19%3BFQ%3D27.9%3BPV4%3D1%2C0.0054%2C1%2C7.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C57:58 scaffold1050 SAMTools SNP 13304 13304 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D19%3BFQ%3D7.78%3BPV4%3D1%2C8.4e-06%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C56:34 scaffold1050 SAMTools SNP 13305 13305 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D19%3BFQ%3D7.78%3BPV4%3D1%2C3.2e-05%2C1%2C0.00083;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C56:34 scaffold1050 SAMTools SNP 13455 13455 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.036%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1050 SAMTools SNP 13456 13456 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.039%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1052 SAMTools SNP 10437 10437 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C28%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C0.36%2C1%2C4.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C36:39 scaffold1052 SAMTools SNP 10442 10442 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C3.8e-05%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C31:34 scaffold1052 SAMTools SNP 10443 10443 28 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.00024%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C33:36 scaffold1052 SAMTools SNP 10468 10468 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1052 SAMTools SNP 41941 41941 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1053 SAMTools SNP 61689 61689 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1053 SAMTools SNP 61690 61690 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1053 SAMTools SNP 64632 64632 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1053 SAMTools SNP 64633 64633 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1053 SAMTools SNP 282704 282704 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1053 SAMTools SNP 361178 361178 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1054 SAMTools SNP 297124 297124 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1056 SAMTools SNP 115562 115562 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.25%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold1056 SAMTools SNP 115573 115573 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0036%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold1056 SAMTools SNP 123534 123534 8.93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.065%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold106 SAMTools SNP 146120 146120 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold106 SAMTools SNP 391420 391420 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold106 SAMTools SNP 391421 391421 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1064 SAMTools SNP 20894 20894 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C0.00097%2C1%2C8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C60:41 scaffold1067 SAMTools SNP 96996 96996 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold107 SAMTools SNP 544466 544466 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D4.28%3BPV4%3D1%2C0.069%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C34:30 scaffold107 SAMTools SNP 959296 959296 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D20%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C75%2C0:99 scaffold107 SAMTools SNP 959337 959337 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C26%2C0%3BMQ%3D20%3BFQ%3D-88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C61%2C0:99 scaffold1080 SAMTools SNP 309192 309192 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D20%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold1080 SAMTools SNP 321392 321392 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1081 SAMTools SNP 142414 142414 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1081 SAMTools SNP 166903 166903 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.049%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1081 SAMTools SNP 166905 166905 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.049%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1083 SAMTools SNP 26565 26565 27.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1083 SAMTools SNP 26780 26780 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.037%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1086 SAMTools SNP 111829 111829 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D23.8%3BPV4%3D1%2C5.3e-08%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C57:54 scaffold1086 SAMTools SNP 112729 112729 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.00069%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold1086 SAMTools SNP 692798 692798 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1088 SAMTools SNP 29534 29534 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1088 SAMTools SNP 30002 30002 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D4.28%3BPV4%3D1%2C0.0046%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C34:30 scaffold109 SAMTools SNP 39221 39221 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold109 SAMTools SNP 580202 580202 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D20%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C48%2C0:93 scaffold109 SAMTools SNP 580204 580204 35.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C12%3BMQ%3D20%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C4%2C0:7 scaffold1094 SAMTools SNP 54285 54285 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1094 SAMTools SNP 54286 54286 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1094 SAMTools SNP 317294 317294 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0037%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1094 SAMTools SNP 317296 317296 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C6e-05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1094 SAMTools SNP 317307 317307 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1094 SAMTools SNP 317308 317308 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1094 SAMTools SNP 478462 478462 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1094 SAMTools SNP 478463 478463 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1097 SAMTools SNP 50537 50537 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1097 SAMTools SNP 315696 315696 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1097 SAMTools SNP 390995 390995 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1097 SAMTools SNP 423078 423078 14.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1097 SAMTools SNP 423102 423102 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1097 SAMTools SNP 820023 820023 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D7.8%3BPV4%3D1%2C0.043%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C64:34 scaffold11 SAMTools SNP 379988 379988 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold11 SAMTools SNP 379989 379989 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1100 SAMTools SNP 35000 35000 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1100 SAMTools SNP 35001 35001 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1104 SAMTools SNP 445943 445943 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.00016%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold1104 SAMTools SNP 445958 445958 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1104 SAMTools SNP 445959 445959 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1108 SAMTools SNP 292284 292284 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1108 SAMTools SNP 292285 292285 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1119 SAMTools SNP 148425 148425 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1121 SAMTools SNP 64232 64232 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1121 SAMTools SNP 64234 64234 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1121 SAMTools SNP 74180 74180 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1125 SAMTools SNP 2365 2365 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1125 SAMTools SNP 2440 2440 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1127 SAMTools SNP 86916 86916 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1127 SAMTools SNP 86918 86918 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1127 SAMTools SNP 254501 254501 6.17 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1127 SAMTools SNP 257242 257242 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D20%3BFQ%3D23%3BPV4%3D1%2C1.5e-05%2C1%2C8.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C53:53 scaffold1127 SAMTools SNP 261635 261635 25 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C10%3BMQ%3D20%3BFQ%3D26.6%3BPV4%3D1%2C0.016%2C1%2C1.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C59:57 scaffold1132 SAMTools SNP 1046 1046 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1132 SAMTools SNP 1047 1047 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1132 SAMTools SNP 498837 498837 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1132 SAMTools SNP 501386 501386 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1132 SAMTools SNP 813513 813513 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold1132 SAMTools SNP 814124 814124 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1144 SAMTools SNP 33023 33023 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1144 SAMTools SNP 33025 33025 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1144 SAMTools SNP 347726 347726 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold115 SAMTools SNP 465244 465244 32.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.0021%2C1%2C0.00081;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C8:11 scaffold1154 SAMTools SNP 460016 460016 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1154 SAMTools SNP 647370 647370 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1155 SAMTools SNP 386 386 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0008%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1155 SAMTools SNP 387 387 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0008%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1155 SAMTools SNP 1184 1184 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C10%3BMQ%3D20%3BFQ%3D27.6%3BPV4%3D1%2C0.4%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C56:58 scaffold1155 SAMTools SNP 1186 1186 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D20%3BFQ%3D20%3BPV4%3D1%2C0.067%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C50:50 scaffold1155 SAMTools SNP 1190 1190 6.99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.19%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1155 SAMTools SNP 1191 1191 22.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.36%2C1%2C3.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C2:5 scaffold1157 SAMTools SNP 72034 72034 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1157 SAMTools SNP 155107 155107 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1164 SAMTools SNP 164765 164765 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1164 SAMTools SNP 172295 172295 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.016%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1164 SAMTools SNP 172296 172296 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.014%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1164 SAMTools SNP 322401 322401 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold117 SAMTools SNP 115723 115723 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold117 SAMTools SNP 115724 115724 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold117 SAMTools SNP 118704 118704 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1174 SAMTools SNP 36044 36044 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1174 SAMTools SNP 36093 36093 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1174 SAMTools SNP 59361 59361 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1174 SAMTools SNP 59362 59362 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1174 SAMTools SNP 406938 406938 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1174 SAMTools SNP 406993 406993 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1174 SAMTools SNP 493273 493273 24.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C2.2e-06%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold1174 SAMTools SNP 566105 566105 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1174 SAMTools SNP 566128 566128 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D-5.45%3BPV4%3D1%2C0.0011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C23:26 scaffold1174 SAMTools SNP 602337 602337 25 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C0.0042%2C1%2C8.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C26:29 scaffold1174 SAMTools SNP 602338 602338 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C0.003%2C1%2C5.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C26:29 scaffold1174 SAMTools SNP 602341 602341 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D27.6%3BPV4%3D1%2C0.15%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C56:58 scaffold1174 SAMTools SNP 602634 602634 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D15%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C64:28 scaffold1179 SAMTools SNP 627728 627728 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.025%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold1179 SAMTools SNP 627729 627729 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.22%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold1179 SAMTools SNP 922029 922029 6.45 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0020%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C8:13 scaffold1179 SAMTools SNP 1095674 1095674 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1179 SAMTools SNP 1096546 1096546 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1179 SAMTools SNP 1105590 1105590 15.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold1179 SAMTools SNP 1105591 1105591 15.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold1179 SAMTools SNP 1105593 1105593 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1179 SAMTools SNP 1105594 1105594 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1179 SAMTools SNP 1113821 1113821 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.24%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1179 SAMTools SNP 1113822 1113822 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.41%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold118 SAMTools SNP 67102 67102 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1185 SAMTools SNP 145318 145318 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1188 SAMTools SNP 162205 162205 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1188 SAMTools SNP 162206 162206 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1188 SAMTools SNP 910836 910836 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1188 SAMTools SNP 910837 910837 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1188 SAMTools SNP 918644 918644 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.059%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1189 SAMTools SNP 557797 557797 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1189 SAMTools SNP 557798 557798 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1189 SAMTools SNP 566852 566852 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C14%3BMQ%3D20%3BFQ%3D-52%3BPV4%3D1%2C1%2C1%2C1.9e-09;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C25%2C0:47 scaffold1189 SAMTools SNP 566853 566853 42.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D20%3BFQ%3D-40%3BPV4%3D1%2C0.46%2C1%2C8.2e-10;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C13%2C0:23 scaffold1189 SAMTools SNP 768711 768711 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C0.038%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C26:29 scaffold1191 SAMTools SNP 73371 73371 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1195 SAMTools SNP 47152 47152 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D20%3BFQ%3D9.43%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C52:37 scaffold1195 SAMTools SNP 47155 47155 15.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.075%2C1%2C3.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold1195 SAMTools SNP 60948 60948 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.044%2C1%2C0.00083;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1195 SAMTools SNP 69222 69222 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1195 SAMTools SNP 293307 293307 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold12 SAMTools SNP 83890 83890 8.93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.029%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold12 SAMTools SNP 83891 83891 8.93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.029%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold12 SAMTools SNP 84157 84157 35.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.004%2C1%2C2.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C2:5 scaffold12 SAMTools SNP 84164 84164 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold12 SAMTools SNP 84165 84165 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold12 SAMTools SNP 148298 148298 8.93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0020%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold120 SAMTools SNP 1508 1508 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold120 SAMTools SNP 66894 66894 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold120 SAMTools SNP 137044 137044 27.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold120 SAMTools SNP 137555 137555 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1203 SAMTools SNP 23635 23635 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1203 SAMTools SNP 87595 87595 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D20%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C36%2C0:69 scaffold1203 SAMTools SNP 87664 87664 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C0.00062%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C26:29 scaffold1203 SAMTools SNP 153294 153294 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1203 SAMTools SNP 153295 153295 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1203 SAMTools SNP 262855 262855 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1203 SAMTools SNP 262856 262856 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1204 SAMTools SNP 26479 26479 6.34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D18%3BFQ%3D-25%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C2:7 scaffold121 SAMTools SNP 381014 381014 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold121 SAMTools SNP 381016 381016 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold121 SAMTools SNP 520835 520835 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold121 SAMTools SNP 802392 802392 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D20%3BFQ%3D20.3%3BPV4%3D1%2C3.3e-06%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C48:50 scaffold121 SAMTools SNP 858736 858736 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold121 SAMTools SNP 858737 858737 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold121 SAMTools SNP 877024 877024 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0010%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.0041%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold121 SAMTools SNP 877042 877042 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.014%2C1%2C2.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold121 SAMTools SNP 877043 877043 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0309%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.13%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold1210 SAMTools SNP 43010 43010 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1210 SAMTools SNP 51947 51947 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.00021%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1210 SAMTools SNP 162998 162998 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1210 SAMTools SNP 162999 162999 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1212 SAMTools SNP 61716 61716 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1213 SAMTools SNP 88229 88229 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.12%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1213 SAMTools SNP 88230 88230 15.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.0095%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold1213 SAMTools SNP 88245 88245 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D20%3BPV4%3D1%2C0.0024%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C50:50 scaffold1213 SAMTools SNP 88247 88247 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.033%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold1213 SAMTools SNP 139881 139881 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1213 SAMTools SNP 139953 139953 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1213 SAMTools SNP 221294 221294 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1213 SAMTools SNP 222452 222452 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1213 SAMTools SNP 272206 272206 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1213 SAMTools SNP 673359 673359 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1213 SAMTools SNP 721531 721531 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1213 SAMTools SNP 755981 755981 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1213 SAMTools SNP 755983 755983 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1213 SAMTools SNP 951330 951330 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1213 SAMTools SNP 1002180 1002180 17.7 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1213 SAMTools SNP 1002181 1002181 17.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.0051%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1213 SAMTools SNP 1003148 1003148 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.017%2C1%2C5.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C38:41 scaffold1213 SAMTools SNP 1003149 1003149 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C1%2C1%2C8.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold1213 SAMTools SNP 1003154 1003154 27.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1213 SAMTools SNP 1003155 1003155 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1213 SAMTools SNP 1050904 1050904 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1213 SAMTools SNP 1050906 1050906 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1213 SAMTools SNP 1094213 1094213 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C1%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1213 SAMTools SNP 1094214 1094214 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C1%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1214 SAMTools SNP 1128 1128 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1214 SAMTools SNP 1129 1129 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1217 SAMTools SNP 230873 230873 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C13%3BMQ%3D19%3BFQ%3D24.9%3BPV4%3D1%2C0.047%2C1%2C4.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C56:55 scaffold1217 SAMTools SNP 230875 230875 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C10%3BMQ%3D19%3BFQ%3D17.8%3BPV4%3D1%2C0.00038%2C1%2C9.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C57:48 scaffold1217 SAMTools SNP 230916 230916 33.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D20%3BFQ%3D-31%3BPV4%3D1%2C0.2%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C4%2C0:7 scaffold1217 SAMTools SNP 230917 230917 17.7 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.27%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1219 SAMTools SNP 216410 216410 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C11%3BMQ%3D20%3BFQ%3D-5.45%3BPV4%3D1%2C7.4e-05%2C1%2C1.5e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C23:26 scaffold1219 SAMTools SNP 216411 216411 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C9%3BMQ%3D20%3BFQ%3D3.55%3BPV4%3D1%2C0.00023%2C1%2C5e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C28:31 scaffold1219 SAMTools SNP 216465 216465 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1219 SAMTools SNP 216551 216551 29.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D20%3BFQ%3D-28%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C1%2C0:4 scaffold1219 SAMTools SNP 216798 216798 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D20%3BFQ%3D16.1%3BPV4%3D1%2C0.01%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C46:46 scaffold1219 SAMTools SNP 216799 216799 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.07%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C38:41 scaffold1219 SAMTools SNP 288993 288993 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1219 SAMTools SNP 493515 493515 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1219 SAMTools SNP 517236 517236 15.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D18%3BFQ%3D-20%3BPV4%3D1%2C3.6e-05%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C7:10 scaffold1219 SAMTools SNP 517291 517291 48 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C0%3BMQ%3D19%3BFQ%3D-61%3BPV4%3D1%2C0.00038%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C34%2C0:65 scaffold1219 SAMTools SNP 567161 567161 5.29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1219 SAMTools SNP 667091 667091 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C0%2C21%3BMQ%3D20%3BFQ%3D10.2%3BPV4%3D1%2C0.00011%2C1%2C2.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C49:38 scaffold1219 SAMTools SNP 667102 667102 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C16%3BMQ%3D20%3BFQ%3D24.8%3BPV4%3D1%2C1.1e-06%2C1%2C1.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C52:55 scaffold1220 SAMTools SNP 13830 13830 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1221 SAMTools SNP 134908 134908 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1221 SAMTools SNP 135691 135691 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1221 SAMTools SNP 428342 428342 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1221 SAMTools SNP 428343 428343 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1232 SAMTools SNP 18074 18074 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.092%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1232 SAMTools SNP 18075 18075 8.93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1232 SAMTools SNP 99337 99337 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D4.11%3BPV4%3D1%2C0.18%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C29:32 scaffold1235 SAMTools SNP 73788 73788 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1235 SAMTools SNP 79717 79717 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1235 SAMTools SNP 79748 79748 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1235 SAMTools SNP 140053 140053 32.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold1241 SAMTools SNP 103096 103096 24.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold1241 SAMTools SNP 240826 240826 6.99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0020%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1241 SAMTools SNP 241216 241216 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1241 SAMTools SNP 257648 257648 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C2.4e-05%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold1241 SAMTools SNP 355949 355949 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1241 SAMTools SNP 373183 373183 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1241 SAMTools SNP 442494 442494 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1241 SAMTools SNP 442495 442495 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1244 SAMTools SNP 3223 3223 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1244 SAMTools SNP 3321 3321 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1244 SAMTools SNP 22254 22254 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D4.1%3BPV4%3D1%2C0.11%2C1%2C2.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C29:32 scaffold1244 SAMTools SNP 22256 22256 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D16.1%3BPV4%3D1%2C0.0022%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C46:46 scaffold1244 SAMTools SNP 22265 22265 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C15%2C0%3BMQ%3D20%3BFQ%3D29.9%3BPV4%3D1%2C2.2e-08%2C1%2C5.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C59:60 scaffold1244 SAMTools SNP 22266 22266 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C15%2C0%3BMQ%3D20%3BFQ%3D29.9%3BPV4%3D1%2C4.3e-08%2C1%2C2.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C59:60 scaffold1244 SAMTools SNP 499300 499300 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.09%3BPV4%3D1%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C34:32 scaffold1244 SAMTools SNP 541348 541348 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1245 SAMTools SNP 141535 141535 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1245 SAMTools SNP 223481 223481 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C39:42 scaffold1245 SAMTools SNP 224001 224001 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1249 SAMTools SNP 401137 401137 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1249 SAMTools SNP 401138 401138 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1252 SAMTools SNP 151107 151107 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1252 SAMTools SNP 151174 151174 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1255 SAMTools SNP 254145 254145 17.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1255 SAMTools SNP 255183 255183 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.16%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1255 SAMTools SNP 255184 255184 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1255 SAMTools SNP 365855 365855 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1255 SAMTools SNP 501235 501235 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1255 SAMTools SNP 504054 504054 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1258 SAMTools SNP 771922 771922 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D20%3BFQ%3D16%3BPV4%3D1%2C5.4e-06%2C1%2C3.6e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C59:46 scaffold1258 SAMTools SNP 771926 771926 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0019%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D20%3BFQ%3D4.11%3BPV4%3D1%2C0.41%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C29:32 scaffold1258 SAMTools SNP 776619 776619 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C11%3BMQ%3D20%3BFQ%3D19%3BPV4%3D1%2C6.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C62:49 scaffold1258 SAMTools SNP 776622 776622 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C64:39 scaffold1258 SAMTools SNP 787112 787112 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1258 SAMTools SNP 793596 793596 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1258 SAMTools SNP 793598 793598 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1262 SAMTools SNP 82276 82276 8.93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.15%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1262 SAMTools SNP 107560 107560 46.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold1262 SAMTools SNP 423519 423519 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1264 SAMTools SNP 1034 1034 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1264 SAMTools SNP 1035 1035 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1267 SAMTools SNP 561411 561411 6.21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0177%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.34%3BPV4%3D1%2C0.00017%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C22:27 scaffold128 SAMTools SNP 550752 550752 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1286 SAMTools SNP 52117 52117 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1288 SAMTools SNP 21112 21112 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1288 SAMTools SNP 92750 92750 8.93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1288 SAMTools SNP 92765 92765 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C0.00042%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C44:46 scaffold1288 SAMTools SNP 92766 92766 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C0.00019%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C44:46 scaffold1293 SAMTools SNP 227857 227857 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold1293 SAMTools SNP 227914 227914 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D9.52%3BPV4%3D1%2C0.00014%2C1%2C8.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C64:37 scaffold1299 SAMTools SNP 64011 64011 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1299 SAMTools SNP 64145 64145 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1299 SAMTools SNP 76011 76011 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C14%2C0%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C7.9e-07%2C1%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C37:40 scaffold1299 SAMTools SNP 105757 105757 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1299 SAMTools SNP 130551 130551 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1301 SAMTools SNP 196528 196528 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.00043%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C33:36 scaffold1301 SAMTools SNP 196529 196529 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.0002%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C33:36 scaffold1301 SAMTools SNP 364722 364722 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1301 SAMTools SNP 364723 364723 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1301 SAMTools SNP 437611 437611 35.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C11%3BMQ%3D20%3BFQ%3D-28%3BPV4%3D1%2C0.014%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C1%2C0:4 scaffold1301 SAMTools SNP 484217 484217 17.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0393%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1301 SAMTools SNP 485364 485364 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.046%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1301 SAMTools SNP 486514 486514 22.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.45%2C1%2C5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C2:5 scaffold1301 SAMTools SNP 486515 486515 14.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.34%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C5:8 scaffold1301 SAMTools SNP 583054 583054 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0080%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold1301 SAMTools SNP 1000370 1000370 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1301 SAMTools SNP 1058431 1058431 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D20%3BFQ%3D7.8%3BPV4%3D1%2C0.38%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C64:34 scaffold1301 SAMTools SNP 1058501 1058501 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0010%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.03%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold1301 SAMTools SNP 1058933 1058933 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1301 SAMTools SNP 1068678 1068678 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1301 SAMTools SNP 1069011 1069011 15.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold1301 SAMTools SNP 1069012 1069012 15.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.015%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold1301 SAMTools SNP 1069016 1069016 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1301 SAMTools SNP 1273191 1273191 17.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0014%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1307 SAMTools SNP 94523 94523 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1307 SAMTools SNP 347487 347487 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1307 SAMTools SNP 434706 434706 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1307 SAMTools SNP 461158 461158 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1307 SAMTools SNP 461159 461159 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1309 SAMTools SNP 9095 9095 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1309 SAMTools SNP 9343 9343 5.29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1309 SAMTools SNP 53530 53530 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1309 SAMTools SNP 53531 53531 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1314 SAMTools SNP 183997 183997 8.93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.22%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1314 SAMTools SNP 183998 183998 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.092%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1315 SAMTools SNP 78753 78753 5.29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1315 SAMTools SNP 78823 78823 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1315 SAMTools SNP 420199 420199 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0333%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1316 SAMTools SNP 114717 114717 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1316 SAMTools SNP 114718 114718 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1322 SAMTools SNP 304166 304166 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold1322 SAMTools SNP 463591 463591 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1324 SAMTools SNP 526195 526195 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0010%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold1324 SAMTools SNP 526197 526197 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0010%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold1324 SAMTools SNP 526293 526293 15.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.0003%2C1%2C4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold1327 SAMTools SNP 149909 149909 30.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D-31%3BPV4%3D1%2C0.29%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C4%2C0:7 scaffold1330 SAMTools SNP 201763 201763 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.33%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1333 SAMTools SNP 98425 98425 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C7%3BMQ%3D20%3BFQ%3D13.2%3BPV4%3D1%2C0.036%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C64:42 scaffold1333 SAMTools SNP 98426 98426 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D20%3BFQ%3D6.2%3BPV4%3D1%2C0.0076%2C1%2C4.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C65:31 scaffold1333 SAMTools SNP 98452 98452 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.039%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold1333 SAMTools SNP 98453 98453 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0081%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1347 SAMTools SNP 266951 266951 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1347 SAMTools SNP 266969 266969 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1350 SAMTools SNP 268051 268051 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1350 SAMTools SNP 268052 268052 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1350 SAMTools SNP 293982 293982 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1350 SAMTools SNP 295487 295487 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0070%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0037%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1350 SAMTools SNP 295505 295505 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D20.3%3BPV4%3D1%2C1.6e-06%2C1%2C8.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C55:50 scaffold1350 SAMTools SNP 296165 296165 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0140%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1350 SAMTools SNP 296638 296638 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D9.29%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C36:39 scaffold1354 SAMTools SNP 197882 197882 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1357 SAMTools SNP 10929 10929 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1358 SAMTools SNP 84609 84609 15.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1358 SAMTools SNP 86800 86800 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1358 SAMTools SNP 86822 86822 29.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D4%2C0%2C17%2C0%3BMQ%3D20%3BFQ%3D-21%3BPV4%3D1%2C0.00042%2C1%2C1.4e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C6:9 scaffold1358 SAMTools SNP 86842 86842 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D27%2C0%2C11%2C0%3BMQ%3D20%3BFQ%3D4.76%3BPV4%3D1%2C0.019%2C1%2C1.1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C52:28 scaffold1359 SAMTools SNP 8678 8678 8.93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.027%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1362 SAMTools SNP 313249 313249 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.048%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1366 SAMTools SNP 12569 12569 17.7 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.056%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1366 SAMTools SNP 12570 12570 17.7 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.056%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold138 SAMTools SNP 7383 7383 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold138 SAMTools SNP 7384 7384 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold138 SAMTools SNP 14507 14507 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold138 SAMTools SNP 14508 14508 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1385 SAMTools SNP 180257 180257 35.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1385 SAMTools SNP 201859 201859 17.7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.19%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1385 SAMTools SNP 201861 201861 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.069%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1385 SAMTools SNP 202632 202632 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D20%3BPV4%3D1%2C0.0021%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C64:50 scaffold1385 SAMTools SNP 202633 202633 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D13.2%3BPV4%3D1%2C0.092%2C1%2C8.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C64:42 scaffold1385 SAMTools SNP 202666 202666 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C13%2C0%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C2.1e-06%2C1%2C2e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C56:41 scaffold1385 SAMTools SNP 202667 202667 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C18%2C0%3BMQ%3D20%3BFQ%3D21.5%3BPV4%3D1%2C6.7e-10%2C1%2C1.8e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C58:51 scaffold1385 SAMTools SNP 262536 262536 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C9%3BMQ%3D20%3BFQ%3D-9.5%3BPV4%3D1%2C0.0087%2C1%2C7.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C18:21 scaffold1385 SAMTools SNP 262538 262538 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.42%2C1%2C2.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold1385 SAMTools SNP 262548 262548 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1385 SAMTools SNP 300991 300991 27.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold1391 SAMTools SNP 218244 218244 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1391 SAMTools SNP 275768 275768 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1391 SAMTools SNP 401753 401753 39.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D20%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C10%2C0:17 scaffold1391 SAMTools SNP 406752 406752 8.93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1391 SAMTools SNP 406754 406754 8.93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.029%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1397 SAMTools SNP 436462 436462 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1397 SAMTools SNP 436515 436515 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold140 SAMTools SNP 196733 196733 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold140 SAMTools SNP 319777 319777 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.00021%2C1%2C1.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1402 SAMTools SNP 35515 35515 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0014%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C0%2C38%3BMQ%3D20%3BFQ%3D-80%3BPV4%3D1%2C0.14%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C53%2C0:76 scaffold1402 SAMTools SNP 35576 35576 22.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C14%3BMQ%3D20%3BFQ%3D-12.3%3BPV4%3D1%2C2.3e-12%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C15:18 scaffold1402 SAMTools SNP 35615 35615 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0176%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1402 SAMTools SNP 43196 43196 27.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1402 SAMTools SNP 45256 45256 59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D20%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C51%2C0:98 scaffold1402 SAMTools SNP 45258 45258 37.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C15%3BMQ%3D20%3BFQ%3D-40%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C13%2C0:23 scaffold1402 SAMTools SNP 185120 185120 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D4.69%3BPV4%3D1%2C2.3e-05%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C34:31 scaffold1404 SAMTools SNP 1306 1306 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1404 SAMTools SNP 1386 1386 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1404 SAMTools SNP 38293 38293 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1404 SAMTools SNP 38297 38297 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1404 SAMTools SNP 176581 176581 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1409 SAMTools SNP 366761 366761 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1411 SAMTools SNP 75167 75167 35.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold142 SAMTools SNP 109171 109171 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold142 SAMTools SNP 1002061 1002061 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold142 SAMTools SNP 1019830 1019830 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold142 SAMTools SNP 1042157 1042157 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold142 SAMTools SNP 1055597 1055597 17.7 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.16%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold142 SAMTools SNP 1056618 1056618 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C8%3BMQ%3D20%3BFQ%3D6.98%3BPV4%3D1%2C3e-18%2C1%2C8.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C63:33 scaffold142 SAMTools SNP 1058977 1058977 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D3.86%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C30:32 scaffold142 SAMTools SNP 1058982 1058982 46.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D20%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold142 SAMTools SNP 1062001 1062001 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1423 SAMTools SNP 91314 91314 22.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D20%3BFQ%3D-10.4%3BPV4%3D1%2C0.33%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C17:20 scaffold1423 SAMTools SNP 180279 180279 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1423 SAMTools SNP 180308 180308 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.14%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1423 SAMTools SNP 180310 180310 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.15%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1423 SAMTools SNP 182646 182646 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.016%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1423 SAMTools SNP 206438 206438 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1423 SAMTools SNP 210599 210599 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1423 SAMTools SNP 210600 210600 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1423 SAMTools SNP 508097 508097 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0012%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold1423 SAMTools SNP 508098 508098 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.00018%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold1423 SAMTools SNP 951652 951652 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C37%2C0%3BMQ%3D20%3BFQ%3D-66%3BPV4%3D1%2C8.8e-11%2C1%2C2.7e-15;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C39%2C0:61 scaffold1423 SAMTools SNP 951653 951653 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C0%2C44%2C0%3BMQ%3D20%3BFQ%3D-67%3BPV4%3D1%2C0.069%2C1%2C4.1e-13;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C40%2C0:55 scaffold143 SAMTools SNP 2504 2504 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1437 SAMTools SNP 68330 68330 27.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1437 SAMTools SNP 69518 69518 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold144 SAMTools SNP 652830 652830 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold144 SAMTools SNP 652831 652831 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1445 SAMTools SNP 106235 106235 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1445 SAMTools SNP 135744 135744 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1445 SAMTools SNP 135756 135756 5.29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1445 SAMTools SNP 136557 136557 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1447 SAMTools SNP 299291 299291 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0177%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold145 SAMTools SNP 144120 144120 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold145 SAMTools SNP 148803 148803 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold145 SAMTools SNP 149607 149607 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1452 SAMTools SNP 463 463 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1452 SAMTools SNP 464 464 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1459 SAMTools SNP 29282 29282 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1459 SAMTools SNP 87373 87373 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1459 SAMTools SNP 87439 87439 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold146 SAMTools SNP 111076 111076 21.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold146 SAMTools SNP 223414 223414 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold146 SAMTools SNP 223415 223415 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1467 SAMTools SNP 81511 81511 3.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.68%3BPV4%3D1%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C22:26 scaffold1467 SAMTools SNP 110063 110063 27.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1468 SAMTools SNP 27535 27535 8.93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1468 SAMTools SNP 64448 64448 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.0011%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold1468 SAMTools SNP 64450 64450 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.35%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold1468 SAMTools SNP 68263 68263 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0186%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1468 SAMTools SNP 68419 68419 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D7.8%3BPV4%3D1%2C0.42%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C64:34 scaffold1468 SAMTools SNP 68420 68420 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D7.8%3BPV4%3D1%2C0.061%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C64:34 scaffold1468 SAMTools SNP 68650 68650 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0080%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1469 SAMTools SNP 146274 146274 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1469 SAMTools SNP 329348 329348 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1476 SAMTools SNP 151074 151074 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold148 SAMTools SNP 169118 169118 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1484 SAMTools SNP 324641 324641 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1488 SAMTools SNP 112344 112344 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1488 SAMTools SNP 112902 112902 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1489 SAMTools SNP 52242 52242 5.29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1490 SAMTools SNP 308754 308754 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1490 SAMTools SNP 390735 390735 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1490 SAMTools SNP 390736 390736 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0365%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1491 SAMTools SNP 54192 54192 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C6%3BMQ%3D20%3BFQ%3D6.2%3BPV4%3D1%2C1.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C65:31 scaffold1491 SAMTools SNP 54275 54275 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C8%3BMQ%3D20%3BFQ%3D20.7%3BPV4%3D1%2C2.9e-10%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C59:51 scaffold1492 SAMTools SNP 154868 154868 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1492 SAMTools SNP 166215 166215 8.93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1497 SAMTools SNP 156691 156691 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0095%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold150 SAMTools SNP 472679 472679 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold150 SAMTools SNP 862450 862450 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0%2C1%2C0.00056;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold150 SAMTools SNP 862452 862452 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C4.1e-05%2C1%2C4.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C26:29 scaffold150 SAMTools SNP 864361 864361 6.99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.029%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold150 SAMTools SNP 864362 864362 6.99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.0091%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold150 SAMTools SNP 905689 905689 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D7.8%3BPV4%3D1%2C0.44%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C63:34 scaffold150 SAMTools SNP 1283365 1283365 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold150 SAMTools SNP 1287650 1287650 8.93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold150 SAMTools SNP 1291598 1291598 17.7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold150 SAMTools SNP 1291652 1291652 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D4.11%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C29:32 scaffold150 SAMTools SNP 1374160 1374160 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D20%3BFQ%3D16.1%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C46:46 scaffold150 SAMTools SNP 1443667 1443667 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.35%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C57:33 scaffold150 SAMTools SNP 1677577 1677577 5.29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold150 SAMTools SNP 1685295 1685295 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold150 SAMTools SNP 1750998 1750998 22.5 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C17%2C5%2C50%2C0%2C47:21 scaffold150 SAMTools SNP 1751005 1751005 25.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1501 SAMTools SNP 28068 28068 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1503 SAMTools SNP 26231 26231 17.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1503 SAMTools SNP 26506 26506 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1503 SAMTools SNP 26507 26507 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1506 SAMTools SNP 10652 10652 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0014%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold1506 SAMTools SNP 10717 10717 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D20%3BFQ%3D10.3%3BPV4%3D1%2C0.0035%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C41:40 scaffold1508 SAMTools SNP 2573 2573 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1508 SAMTools SNP 59497 59497 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1512 SAMTools SNP 475886 475886 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1514 SAMTools SNP 34820 34820 35.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D20%3BFQ%3D-34%3BPV4%3D1%2C0.12%2C1%2C2.3e-07;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C7%2C0:12 scaffold1518 SAMTools SNP 320551 320551 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1518 SAMTools SNP 343870 343870 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold152 SAMTools SNP 144839 144839 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D16%3BFQ%3D-30%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold152 SAMTools SNP 144841 144841 3.55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D16%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1525 SAMTools SNP 80872 80872 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1527 SAMTools SNP 16462 16462 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1528 SAMTools SNP 120641 120641 25 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C0.0022%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C26:29 scaffold1532 SAMTools SNP 550104 550104 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C7.8e-08%2C1%2C3.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C31:34 scaffold1532 SAMTools SNP 887608 887608 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1532 SAMTools SNP 887610 887610 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1532 SAMTools SNP 1411751 1411751 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1532 SAMTools SNP 1411773 1411773 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1532 SAMTools SNP 1506062 1506062 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1533 SAMTools SNP 35846 35846 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1541 SAMTools SNP 87 87 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1541 SAMTools SNP 151603 151603 16.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C2:5 scaffold1543 SAMTools SNP 28622 28622 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D20%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C39%2C0:75 scaffold1554 SAMTools SNP 244219 244219 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold156 SAMTools SNP 150248 150248 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold156 SAMTools SNP 227928 227928 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold156 SAMTools SNP 320847 320847 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold156 SAMTools SNP 325178 325178 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.27%2C1%2C5.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold156 SAMTools SNP 325191 325191 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.11%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C38:41 scaffold156 SAMTools SNP 325193 325193 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.38%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold156 SAMTools SNP 1099357 1099357 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1561 SAMTools SNP 85305 85305 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1561 SAMTools SNP 85903 85903 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1561 SAMTools SNP 111324 111324 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1562 SAMTools SNP 52052 52052 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1562 SAMTools SNP 109240 109240 24.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.002%2C1%2C8.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold157 SAMTools SNP 32693 32693 26.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0014%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D20%3BFQ%3D-13.2%3BPV4%3D1%2C0.0011%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C14:17 scaffold157 SAMTools SNP 134424 134424 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D19%3BFQ%3D-7.8%3BPV4%3D1%2C0.018%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C20:23 scaffold157 SAMTools SNP 404233 404233 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold157 SAMTools SNP 426668 426668 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold157 SAMTools SNP 557721 557721 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0161%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1574 SAMTools SNP 440528 440528 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1574 SAMTools SNP 440609 440609 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D4.69%3BPV4%3D1%2C0.054%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C34:31 scaffold1575 SAMTools SNP 26472 26472 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1575 SAMTools SNP 26509 26509 24.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0081%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold1579 SAMTools SNP 338758 338758 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1579 SAMTools SNP 338759 338759 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1579 SAMTools SNP 342431 342431 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1579 SAMTools SNP 342448 342448 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1583 SAMTools SNP 88879 88879 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D20%3BFQ%3D9.74%3BPV4%3D1%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C38:39 scaffold1583 SAMTools SNP 88892 88892 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1583 SAMTools SNP 623703 623703 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0186%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1583 SAMTools SNP 661395 661395 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1583 SAMTools SNP 899381 899381 17.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.0095%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1583 SAMTools SNP 899382 899382 17.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.0095%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1583 SAMTools SNP 899408 899408 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.0014%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold1583 SAMTools SNP 899409 899409 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.00065%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold1584 SAMTools SNP 212358 212358 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D-9.5%3BPV4%3D1%2C1.7e-09%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C18:21 scaffold1584 SAMTools SNP 359490 359490 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1584 SAMTools SNP 359528 359528 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1584 SAMTools SNP 418119 418119 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1584 SAMTools SNP 418120 418120 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1588 SAMTools SNP 58529 58529 14.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1588 SAMTools SNP 58531 58531 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1589 SAMTools SNP 330692 330692 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1589 SAMTools SNP 333665 333665 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1589 SAMTools SNP 334559 334559 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1589 SAMTools SNP 397015 397015 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0010%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.42%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1592 SAMTools SNP 46272 46272 3.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1599 SAMTools SNP 28493 28493 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1599 SAMTools SNP 32131 32131 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1599 SAMTools SNP 32133 32133 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0224%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1599 SAMTools SNP 178839 178839 8.93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.31%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1599 SAMTools SNP 178844 178844 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1599 SAMTools SNP 181306 181306 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1599 SAMTools SNP 368554 368554 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1599 SAMTools SNP 694452 694452 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1599 SAMTools SNP 694460 694460 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1599 SAMTools SNP 694462 694462 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1599 SAMTools SNP 694740 694740 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C52:46 scaffold1599 SAMTools SNP 694758 694758 29.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D20%3BFQ%3D-28%3BPV4%3D1%2C0.0073%2C1%2C5.2e-06;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C1%2C0:4 scaffold160 SAMTools SNP 313350 313350 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold160 SAMTools SNP 641830 641830 6.21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.34%3BPV4%3D1%2C0.00086%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C22:27 scaffold1600 SAMTools SNP 202973 202973 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1603 SAMTools SNP 141301 141301 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1603 SAMTools SNP 173445 173445 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold1603 SAMTools SNP 173484 173484 25 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C6.7e-06%2C1%2C2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C26:29 scaffold1603 SAMTools SNP 264349 264349 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1603 SAMTools SNP 264351 264351 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1605 SAMTools SNP 81477 81477 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0171%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1605 SAMTools SNP 369661 369661 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1608 SAMTools SNP 142880 142880 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1608 SAMTools SNP 143624 143624 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C8%3BMQ%3D20%3BFQ%3D19%3BPV4%3D1%2C0.0032%2C1%2C1.2e-22;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C65:49 scaffold1608 SAMTools SNP 143626 143626 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C7%3BMQ%3D20%3BFQ%3D12.3%3BPV4%3D1%2C0.00023%2C1%2C1.5e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C65:41 scaffold1608 SAMTools SNP 144585 144585 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C9%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C0.01%2C1%2C5.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C44:47 scaffold1608 SAMTools SNP 144586 144586 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D20%3BFQ%3D20.3%3BPV4%3D1%2C0.066%2C1%2C8.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C48:50 scaffold161 SAMTools SNP 30385 30385 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold161 SAMTools SNP 30418 30418 8.93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold161 SAMTools SNP 118842 118842 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold161 SAMTools SNP 119084 119084 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C2e-05%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C52:46 scaffold161 SAMTools SNP 119196 119196 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0008%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C10%3BMQ%3D20%3BFQ%3D7.77%3BPV4%3D1%2C1.8e-05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C34:37 scaffold161 SAMTools SNP 122869 122869 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold161 SAMTools SNP 128054 128054 8.67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0099%3BAF1%3D0.5031%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.67%3BPV4%3D1%2C0.00056%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C19:23 scaffold1611 SAMTools SNP 35270 35270 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1611 SAMTools SNP 35321 35321 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1611 SAMTools SNP 238257 238257 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold162 SAMTools SNP 162978 162978 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold162 SAMTools SNP 214675 214675 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold162 SAMTools SNP 217871 217871 15.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C1%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold163 SAMTools SNP 159767 159767 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold163 SAMTools SNP 212921 212921 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold163 SAMTools SNP 212922 212922 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold163 SAMTools SNP 444928 444928 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold163 SAMTools SNP 444929 444929 8.93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1632 SAMTools SNP 96622 96622 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0095%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1632 SAMTools SNP 96627 96627 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1632 SAMTools SNP 98002 98002 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C7.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold1632 SAMTools SNP 98035 98035 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C8%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C39:42 scaffold1633 SAMTools SNP 120868 120868 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold164 SAMTools SNP 231471 231471 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D20%3BFQ%3D20.3%3BPV4%3D1%2C0.037%2C1%2C4.4e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C55:50 scaffold164 SAMTools SNP 231804 231804 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold164 SAMTools SNP 231806 231806 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold164 SAMTools SNP 314867 314867 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.00049%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold164 SAMTools SNP 314868 314868 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.29%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold164 SAMTools SNP 488896 488896 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C10%3BMQ%3D20%3BFQ%3D13.2%3BPV4%3D1%2C6.7e-05%2C1%2C1.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C61:42 scaffold164 SAMTools SNP 488915 488915 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D20%3BFQ%3D20.3%3BPV4%3D1%2C0.0066%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C55:50 scaffold164 SAMTools SNP 488925 488925 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1641 SAMTools SNP 54051 54051 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1641 SAMTools SNP 54053 54053 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1644 SAMTools SNP 42868 42868 12.2 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C17%2C8%2C41%2C0%2C38:14 scaffold165 SAMTools SNP 123064 123064 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1650 SAMTools SNP 161492 161492 5.29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1650 SAMTools SNP 230191 230191 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1650 SAMTools SNP 230208 230208 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1650 SAMTools SNP 349513 349513 6.99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0010%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.16%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1652 SAMTools SNP 16887 16887 9.49 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C31%2C22%2C42%2C0%2C36:12 scaffold1652 SAMTools SNP 45139 45139 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.00059%2C1%2C0.00099;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold1652 SAMTools SNP 45147 45147 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D25.6%3BPV4%3D1%2C0.3%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C63:56 scaffold1665 SAMTools SNP 40647 40647 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1665 SAMTools SNP 40648 40648 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1665 SAMTools SNP 40655 40655 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0010%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.3%2C1%2C7.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1665 SAMTools SNP 158714 158714 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1665 SAMTools SNP 158716 158716 27.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1665 SAMTools SNP 159758 159758 17.7 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1665 SAMTools SNP 188785 188785 14.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1665 SAMTools SNP 307818 307818 6.95 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1665 SAMTools SNP 307819 307819 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1670 SAMTools SNP 362587 362587 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D15.1%3BPV4%3D1%2C3e-10%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C63:44 scaffold1670 SAMTools SNP 362905 362905 34.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D3%2C0%2C12%2C0%3BMQ%3D20%3BFQ%3D-18.1%3BPV4%3D1%2C1%2C1%2C9.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C9:12 scaffold1670 SAMTools SNP 362906 362906 34.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D3%2C0%2C12%2C0%3BMQ%3D20%3BFQ%3D-18.1%3BPV4%3D1%2C0.053%2C1%2C9.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C9:12 scaffold1671 SAMTools SNP 176070 176070 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D20%3BFQ%3D13%3BPV4%3D1%2C0.00016%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C52:42 scaffold1678 SAMTools SNP 233482 233482 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold168 SAMTools SNP 431627 431627 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D29%3BPV4%3D1%2C9.7e-05%2C1%2C6.4e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C59:59 scaffold168 SAMTools SNP 431628 431628 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D29%3BPV4%3D1%2C0.0028%2C1%2C8.3e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C59:59 scaffold168 SAMTools SNP 432626 432626 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1680 SAMTools SNP 27565 27565 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0161%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1687 SAMTools SNP 114150 114150 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0066%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0032%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold169 SAMTools SNP 83521 83521 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C1%2C1%2C2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C36:39 scaffold169 SAMTools SNP 83525 83525 8.93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold169 SAMTools SNP 83526 83526 12.2 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C17%2C8%2C41%2C0%2C38:14 scaffold169 SAMTools SNP 480193 480193 44.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C21%2C0:39 scaffold169 SAMTools SNP 665424 665424 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C0.0019%2C1%2C1.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C62:47 scaffold169 SAMTools SNP 665425 665425 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D28.2%3BPV4%3D1%2C6.8e-05%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C63:58 scaffold1690 SAMTools SNP 11497 11497 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1692 SAMTools SNP 72508 72508 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1698 SAMTools SNP 139208 139208 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1698 SAMTools SNP 477267 477267 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1698 SAMTools SNP 477268 477268 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1698 SAMTools SNP 547559 547559 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1699 SAMTools SNP 842 842 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold170 SAMTools SNP 30224 30224 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1700 SAMTools SNP 293436 293436 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C14%3BMQ%3D20%3BFQ%3D13.1%3BPV4%3D1%2C0.0017%2C1%2C1.7e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C55:42 scaffold1700 SAMTools SNP 293448 293448 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C16%3BMQ%3D20%3BFQ%3D17.1%3BPV4%3D1%2C0.039%2C1%2C9.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C44:47 scaffold1700 SAMTools SNP 293449 293449 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C18%3BMQ%3D20%3BFQ%3D4.13%3BPV4%3D1%2C1.7e-06%2C1%2C9.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C29:32 scaffold1700 SAMTools SNP 293466 293466 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.042%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1700 SAMTools SNP 293468 293468 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D4.28%3BPV4%3D1%2C0.078%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C34:30 scaffold1703 SAMTools SNP 366877 366877 7.25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C8:12 scaffold1703 SAMTools SNP 537889 537889 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1703 SAMTools SNP 537890 537890 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1704 SAMTools SNP 77254 77254 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1704 SAMTools SNP 84789 84789 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1707 SAMTools SNP 137143 137143 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D20%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C60%2C0:99 scaffold1707 SAMTools SNP 139451 139451 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D20%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold1710 SAMTools SNP 363178 363178 36.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D-34%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C7%2C0:12 scaffold1710 SAMTools SNP 363199 363199 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D6.2%3BPV4%3D1%2C0.0043%2C1%2C3.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C65:31 scaffold1710 SAMTools SNP 363200 363200 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D6.2%3BPV4%3D1%2C0.0016%2C1%2C3.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C65:31 scaffold1711 SAMTools SNP 36673 36673 27.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1715 SAMTools SNP 24041 24041 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1715 SAMTools SNP 24042 24042 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1715 SAMTools SNP 24077 24077 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.23%3BPV4%3D1%2C0.24%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C31:34 scaffold1715 SAMTools SNP 48874 48874 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1715 SAMTools SNP 48918 48918 35.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1715 SAMTools SNP 289177 289177 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1717 SAMTools SNP 207321 207321 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1717 SAMTools SNP 226269 226269 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1717 SAMTools SNP 226270 226270 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1717 SAMTools SNP 228993 228993 17.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.023%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1719 SAMTools SNP 40125 40125 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1719 SAMTools SNP 295611 295611 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0127%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold172 SAMTools SNP 214203 214203 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D20%3BFQ%3D20.9%3BPV4%3D1%2C0.0053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C63:51 scaffold172 SAMTools SNP 215682 215682 18.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.00047%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C2:5 scaffold172 SAMTools SNP 221052 221052 8.93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.055%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold172 SAMTools SNP 221053 221053 8.93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.092%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold172 SAMTools SNP 242246 242246 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D18%3BFQ%3D-3.54%3BPV4%3D1%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C26:29 scaffold172 SAMTools SNP 242271 242271 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D17%3BFQ%3D-36%3BPV4%3D1%2C8.5e-06%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold172 SAMTools SNP 275126 275126 23.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold172 SAMTools SNP 275159 275159 3.55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0008%3BAF1%3D0.5014%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.58%3BPV4%3D1%2C0.008%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C22:26 scaffold1720 SAMTools SNP 56977 56977 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1720 SAMTools SNP 63909 63909 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1720 SAMTools SNP 63910 63910 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1720 SAMTools SNP 106195 106195 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1720 SAMTools SNP 106196 106196 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1722 SAMTools SNP 182153 182153 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1722 SAMTools SNP 183024 183024 26.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0011%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-13.2%3BPV4%3D1%2C0.0005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C14:17 scaffold1723 SAMTools SNP 45740 45740 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1723 SAMTools SNP 223316 223316 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.085%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold1723 SAMTools SNP 223317 223317 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.15%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold1726 SAMTools SNP 337014 337014 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1726 SAMTools SNP 337016 337016 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1726 SAMTools SNP 372275 372275 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1726 SAMTools SNP 389421 389421 5.47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.39%3BPV4%3D1%2C6.6e-05%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C22:27 scaffold173 SAMTools SNP 193691 193691 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold173 SAMTools SNP 193693 193693 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1734 SAMTools SNP 160118 160118 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D19%3BFQ%3D18.1%3BPV4%3D1%2C0.00052%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C46:48 scaffold1734 SAMTools SNP 160119 160119 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C12%2C0%3BMQ%3D19%3BFQ%3D16.1%3BPV4%3D1%2C3.6e-06%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C43:46 scaffold1734 SAMTools SNP 160121 160121 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C13%2C0%3BMQ%3D19%3BFQ%3D27.9%3BPV4%3D1%2C1.5e-06%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C57:58 scaffold1734 SAMTools SNP 160123 160123 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D24%2C0%2C10%2C0%3BMQ%3D19%3BFQ%3D6.18%3BPV4%3D1%2C0.00099%2C1%2C9.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C54:31 scaffold1735 SAMTools SNP 58190 58190 4.78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.44%3BPV4%3D1%2C0.1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C22:27 scaffold1735 SAMTools SNP 58198 58198 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0186%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1735 SAMTools SNP 61918 61918 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D20%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C2.2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C29:32 scaffold1736 SAMTools SNP 14278 14278 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1736 SAMTools SNP 14279 14279 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1736 SAMTools SNP 373688 373688 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1736 SAMTools SNP 445204 445204 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C15%3BMQ%3D20%3BFQ%3D20.8%3BPV4%3D1%2C5e-09%2C1%2C6.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C61:51 scaffold1736 SAMTools SNP 448201 448201 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.069%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1736 SAMTools SNP 448202 448202 17.7 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1736 SAMTools SNP 450623 450623 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D20%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C62:44 scaffold1736 SAMTools SNP 450626 450626 56 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D20%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C39%2C0%2C83%2C22%2C80:75 scaffold1736 SAMTools SNP 450628 450628 24.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1737 SAMTools SNP 511846 511846 15.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.0017%2C1%2C3.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold1737 SAMTools SNP 511848 511848 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1738 SAMTools SNP 32871 32871 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1738 SAMTools SNP 206677 206677 6.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1741 SAMTools SNP 194066 194066 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1741 SAMTools SNP 239105 239105 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1741 SAMTools SNP 239181 239181 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1741 SAMTools SNP 588210 588210 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1742 SAMTools SNP 86475 86475 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C20%3BMQ%3D20%3BFQ%3D25.6%3BPV4%3D1%2C0.00013%2C1%2C1.9e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C58:56 scaffold1742 SAMTools SNP 86477 86477 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C13%3BMQ%3D20%3BFQ%3D19.8%3BPV4%3D1%2C0.0035%2C1%2C3.2e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C60:50 scaffold1742 SAMTools SNP 86549 86549 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.00039%2C1%2C1.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold1742 SAMTools SNP 86550 86550 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.00019%2C1%2C2.1e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold1742 SAMTools SNP 86556 86556 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold175 SAMTools SNP 7024 7024 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1750 SAMTools SNP 239796 239796 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1750 SAMTools SNP 239887 239887 5.29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1750 SAMTools SNP 274470 274470 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C24%2C0%2C146%3BMQ%3D20%3BFQ%3D-217%3BPV4%3D1%2C1.3e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C190%2C0:99 scaffold1751 SAMTools SNP 74104 74104 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.00063%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold1761 SAMTools SNP 29228 29228 3.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0186%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1763 SAMTools SNP 202756 202756 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1763 SAMTools SNP 204288 204288 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1763 SAMTools SNP 210787 210787 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D4.63%3BPV4%3D1%2C0.003%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C43:28 scaffold1763 SAMTools SNP 216257 216257 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1763 SAMTools SNP 410735 410735 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1763 SAMTools SNP 599102 599102 8.07 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.0087%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C8:12 scaffold1763 SAMTools SNP 599502 599502 6.21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.34%3BPV4%3D1%2C0.016%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C22:27 scaffold1766 SAMTools SNP 83333 83333 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.078%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1773 SAMTools SNP 91245 91245 35.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1780 SAMTools SNP 294702 294702 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1781 SAMTools SNP 63683 63683 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C52:46 scaffold1781 SAMTools SNP 65219 65219 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1781 SAMTools SNP 65221 65221 27.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1781 SAMTools SNP 67897 67897 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0060%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1785 SAMTools SNP 76676 76676 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1785 SAMTools SNP 209282 209282 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1785 SAMTools SNP 222508 222508 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1785 SAMTools SNP 292802 292802 8.93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.014%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1785 SAMTools SNP 327589 327589 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1785 SAMTools SNP 335927 335927 6.21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.34%3BPV4%3D1%2C0.098%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C22:27 scaffold1785 SAMTools SNP 759991 759991 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1785 SAMTools SNP 759994 759994 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1788 SAMTools SNP 251161 251161 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1788 SAMTools SNP 295448 295448 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1791 SAMTools SNP 12802 12802 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1791 SAMTools SNP 12803 12803 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1792 SAMTools SNP 247279 247279 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1794 SAMTools SNP 85359 85359 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1794 SAMTools SNP 85360 85360 35.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1794 SAMTools SNP 251592 251592 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1794 SAMTools SNP 341599 341599 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1794 SAMTools SNP 341601 341601 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1794 SAMTools SNP 341611 341611 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.36%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1800 SAMTools SNP 82666 82666 32.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.032%2C1%2C9.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C5:8 scaffold1800 SAMTools SNP 84434 84434 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1800 SAMTools SNP 149863 149863 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1801 SAMTools SNP 3359 3359 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1802 SAMTools SNP 9668 9668 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1803 SAMTools SNP 93508 93508 9.33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0010%3BAF1%3D0.6242%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-23%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C4:8 scaffold1803 SAMTools SNP 93511 93511 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.037%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold1803 SAMTools SNP 170625 170625 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1803 SAMTools SNP 241940 241940 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.36%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1804 SAMTools SNP 111314 111314 46.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D20%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold1804 SAMTools SNP 111396 111396 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1806 SAMTools SNP 30685 30685 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1817 SAMTools SNP 39037 39037 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1817 SAMTools SNP 39038 39038 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1817 SAMTools SNP 48030 48030 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1818 SAMTools SNP 31470 31470 8.93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1818 SAMTools SNP 31471 31471 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1818 SAMTools SNP 40382 40382 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1821 SAMTools SNP 200896 200896 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1821 SAMTools SNP 200949 200949 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1821 SAMTools SNP 278945 278945 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1821 SAMTools SNP 278959 278959 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C8e-05%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold1821 SAMTools SNP 278960 278960 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C2.8e-05%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold1821 SAMTools SNP 278981 278981 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D15%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D4.77%3BPV4%3D1%2C1.5e-07%2C1%2C8.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C64:28 scaffold1821 SAMTools SNP 278982 278982 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C1.4e-10%2C1%2C1.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C64:39 scaffold1822 SAMTools SNP 127062 127062 8.61 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C17%2C8%2C37%2C0%2C34:12 scaffold1822 SAMTools SNP 134050 134050 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C25%3BMQ%3D20%3BFQ%3D-58%3BPV4%3D1%2C0.00015%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C31%2C0:55 scaffold1822 SAMTools SNP 136327 136327 54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C0%3BMQ%3D20%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C175%2C0:99 scaffold1822 SAMTools SNP 136407 136407 22.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0008%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C18%2C0:32 scaffold1822 SAMTools SNP 139002 139002 8.93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.0025%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1825 SAMTools SNP 149657 149657 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1825 SAMTools SNP 149695 149695 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1825 SAMTools SNP 161285 161285 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C0.13%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C60:41 scaffold1827 SAMTools SNP 182534 182534 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1832 SAMTools SNP 304753 304753 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.038%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1832 SAMTools SNP 323771 323771 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D20%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold1835 SAMTools SNP 11568 11568 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1835 SAMTools SNP 11569 11569 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1835 SAMTools SNP 284682 284682 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1835 SAMTools SNP 380814 380814 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1835 SAMTools SNP 380815 380815 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1836 SAMTools SNP 268217 268217 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0020%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.26%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1836 SAMTools SNP 268221 268221 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.035%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1836 SAMTools SNP 598614 598614 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1836 SAMTools SNP 941343 941343 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1838 SAMTools SNP 20949 20949 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1840 SAMTools SNP 10909 10909 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1840 SAMTools SNP 10911 10911 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1841 SAMTools SNP 12289 12289 6.99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1841 SAMTools SNP 12290 12290 6.99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.003%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1841 SAMTools SNP 84039 84039 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1841 SAMTools SNP 105206 105206 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1841 SAMTools SNP 105208 105208 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1841 SAMTools SNP 137206 137206 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1843 SAMTools SNP 21592 21592 26.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D20%3BFQ%3D-13.2%3BPV4%3D1%2C0%2C1%2C7.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C14:17 scaffold1843 SAMTools SNP 21593 21593 26.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D20%3BFQ%3D-13.2%3BPV4%3D1%2C0.0058%2C1%2C4.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C14:17 scaffold1843 SAMTools SNP 21602 21602 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1845 SAMTools SNP 137793 137793 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1845 SAMTools SNP 137817 137817 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1845 SAMTools SNP 267632 267632 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C0.00052%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C65:39 scaffold1845 SAMTools SNP 267990 267990 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C0.0019%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C44:46 scaffold1845 SAMTools SNP 267991 267991 22 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C0.00067%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C44:46 scaffold1845 SAMTools SNP 268023 268023 7.25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.22%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C8:12 scaffold1846 SAMTools SNP 51611 51611 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C52%2C0%2C50%3BMQ%3D19%3BFQ%3D16.4%3BPV4%3D1%2C4e-15%2C1%2C2.2e-41;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C45:46 scaffold1846 SAMTools SNP 51612 51612 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C52%2C0%2C50%3BMQ%3D19%3BFQ%3D16.4%3BPV4%3D1%2C1.5e-11%2C1%2C9.3e-43;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C45:46 scaffold1846 SAMTools SNP 51622 51622 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C35%2C0%2C17%3BMQ%3D18%3BFQ%3D6.72%3BPV4%3D1%2C1.6e-05%2C1%2C8.8e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1846 SAMTools SNP 51632 51632 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C16%3BMQ%3D18%3BFQ%3D17.9%3BPV4%3D1%2C6.4e-07%2C1%2C2.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C45:48 scaffold1846 SAMTools SNP 51633 51633 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C10%3BMQ%3D17%3BFQ%3D16%3BPV4%3D1%2C2.5e-06%2C1%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C47:46 scaffold1848 SAMTools SNP 56617 56617 33.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C9%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.1%2C1%2C9.1e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C5:8 scaffold1848 SAMTools SNP 56638 56638 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1849 SAMTools SNP 29989 29989 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1849 SAMTools SNP 30023 30023 8.93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0010%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1849 SAMTools SNP 118448 118448 4.78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.44%3BPV4%3D1%2C0.35%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C22:27 scaffold1849 SAMTools SNP 118455 118455 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D23.8%3BPV4%3D1%2C0.013%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C52:54 scaffold1849 SAMTools SNP 449212 449212 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1850 SAMTools SNP 64960 64960 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1850 SAMTools SNP 64962 64962 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1855 SAMTools SNP 138662 138662 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C9.4e-05%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold1855 SAMTools SNP 138813 138813 10.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.00025%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C5:8 scaffold1855 SAMTools SNP 139312 139312 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.023%2C1%2C0.00056;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold1855 SAMTools SNP 139314 139314 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.09%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold1855 SAMTools SNP 139898 139898 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold1855 SAMTools SNP 142455 142455 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1855 SAMTools SNP 142456 142456 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1855 SAMTools SNP 143754 143754 48 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C15%3BMQ%3D20%3BFQ%3D-55%3BPV4%3D1%2C0.071%2C1%2C7.3e-13;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C28%2C0:53 scaffold1855 SAMTools SNP 143755 143755 24.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.00022%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold1855 SAMTools SNP 216135 216135 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C7.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1856 SAMTools SNP 139632 139632 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1857 SAMTools SNP 308476 308476 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1857 SAMTools SNP 308477 308477 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1857 SAMTools SNP 324510 324510 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1857 SAMTools SNP 371206 371206 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1857 SAMTools SNP 511100 511100 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1857 SAMTools SNP 517789 517789 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1857 SAMTools SNP 517791 517791 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1858 SAMTools SNP 198283 198283 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D20%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C39%2C0:75 scaffold1858 SAMTools SNP 204305 204305 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C0.015%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C54:37 scaffold1858 SAMTools SNP 207497 207497 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1858 SAMTools SNP 207552 207552 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.11%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1858 SAMTools SNP 207554 207554 15.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5101%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C3.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C14:17 scaffold1858 SAMTools SNP 208319 208319 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D20%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C60%2C0:99 scaffold1858 SAMTools SNP 225746 225746 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1858 SAMTools SNP 225827 225827 12.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0177%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1858 SAMTools SNP 225917 225917 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0066%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C60:41 scaffold1858 SAMTools SNP 225970 225970 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C11%2C0%3BMQ%3D20%3BFQ%3D26.1%3BPV4%3D1%2C1%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C60:56 scaffold1858 SAMTools SNP 226328 226328 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D20%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C39%2C0:75 scaffold1858 SAMTools SNP 248743 248743 41.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold1858 SAMTools SNP 248744 248744 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D20%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C33%2C0:63 scaffold1859 SAMTools SNP 17479 17479 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1859 SAMTools SNP 17481 17481 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold186 SAMTools SNP 63411 63411 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold186 SAMTools SNP 63412 63412 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold186 SAMTools SNP 116487 116487 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold186 SAMTools SNP 116523 116523 23.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C21%2C0%3BMQ%3D20%3BFQ%3D-32%3BPV4%3D1%2C0.0009%2C1%2C6.1e-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C5%2C0:9 scaffold186 SAMTools SNP 116525 116525 13.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C32%2C0%3BMQ%3D20%3BFQ%3D-41%3BPV4%3D1%2C0.36%2C1%2C2.1e-09;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C14%2C0:22 scaffold1860 SAMTools SNP 20414 20414 14.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1860 SAMTools SNP 20469 20469 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1860 SAMTools SNP 202548 202548 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C31:34 scaffold1862 SAMTools SNP 133955 133955 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.16%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1862 SAMTools SNP 133962 133962 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1866 SAMTools SNP 419291 419291 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1867 SAMTools SNP 77177 77177 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1868 SAMTools SNP 190697 190697 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C25%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C1.3e-09%2C1%2C3.1e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C38:41 scaffold1868 SAMTools SNP 190699 190699 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C20%3BMQ%3D20%3BFQ%3D20.8%3BPV4%3D1%2C1.2e-06%2C1%2C2.1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C48:51 scaffold1868 SAMTools SNP 190701 190701 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold1868 SAMTools SNP 190708 190708 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D20%3BFQ%3D20%3BPV4%3D1%2C0.0006%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C50:50 scaffold1868 SAMTools SNP 190709 190709 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D20%3BFQ%3D20%3BPV4%3D1%2C0.00022%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C50:50 scaffold1868 SAMTools SNP 190738 190738 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1869 SAMTools SNP 19561 19561 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1869 SAMTools SNP 19667 19667 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.65%3BPV4%3D1%2C0.00013%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C19:22 scaffold1871 SAMTools SNP 54755 54755 27.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1873 SAMTools SNP 86461 86461 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1873 SAMTools SNP 86467 86467 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1873 SAMTools SNP 130488 130488 14.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1880 SAMTools SNP 112 112 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1880 SAMTools SNP 113 113 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1880 SAMTools SNP 7292 7292 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0041%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1880 SAMTools SNP 7294 7294 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1880 SAMTools SNP 137825 137825 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1880 SAMTools SNP 137826 137826 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1881 SAMTools SNP 91567 91567 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D9.52%3BPV4%3D1%2C0.065%2C1%2C4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C61:37 scaffold1881 SAMTools SNP 91569 91569 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D29%3BPV4%3D1%2C0.067%2C1%2C1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C59:59 scaffold1881 SAMTools SNP 91572 91572 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D14%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C65:31 scaffold1881 SAMTools SNP 91577 91577 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C11%2C0%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C5.3e-10%2C1%2C4.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C61:47 scaffold1881 SAMTools SNP 91578 91578 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C19%2C0%3BMQ%3D20%3BFQ%3D28.5%3BPV4%3D1%2C7.7e-12%2C1%2C2.4e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C59:58 scaffold1881 SAMTools SNP 91583 91583 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D78%2C0%2C116%2C0%3BMQ%3D20%3BFQ%3D-3.54%3BPV4%3D1%2C1.2e-10%2C1%2C3.1e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C26:29 scaffold1881 SAMTools SNP 91584 91584 37 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D83%2C0%2C229%2C0%3BMQ%3D20%3BFQ%3D-122%3BPV4%3D1%2C3.4e-24%2C1%2C1.8e-49;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C95%2C0:99 scaffold1883 SAMTools SNP 155542 155542 5.29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1884 SAMTools SNP 11270 11270 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1884 SAMTools SNP 293846 293846 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1884 SAMTools SNP 293847 293847 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1886 SAMTools SNP 312350 312350 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold189 SAMTools SNP 92036 92036 35.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1890 SAMTools SNP 121422 121422 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1890 SAMTools SNP 151964 151964 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1891 SAMTools SNP 182718 182718 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1892 SAMTools SNP 255551 255551 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1892 SAMTools SNP 265279 265279 27.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1892 SAMTools SNP 265280 265280 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1893 SAMTools SNP 72226 72226 27.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1893 SAMTools SNP 72228 72228 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1893 SAMTools SNP 76914 76914 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D4.69%3BPV4%3D1%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C32:33 scaffold1893 SAMTools SNP 76916 76916 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0095%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold1893 SAMTools SNP 131290 131290 17.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1895 SAMTools SNP 63157 63157 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C14%3BMQ%3D20%3BFQ%3D26.2%3BPV4%3D1%2C3.5e-20%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C61:56 scaffold1895 SAMTools SNP 190039 190039 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0010%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.066%2C1%2C0.00076;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1896 SAMTools SNP 787 787 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D20%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C24%2C0:45 scaffold1896 SAMTools SNP 800 800 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D20%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold1896 SAMTools SNP 19866 19866 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1896 SAMTools SNP 19868 19868 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1896 SAMTools SNP 29296 29296 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.021%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1896 SAMTools SNP 29598 29598 30.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C16%2C0%3BMQ%3D20%3BFQ%3D-29%3BPV4%3D1%2C0.046%2C1%2C8.4e-06;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C2%2C0:5 scaffold1896 SAMTools SNP 29620 29620 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C14%2C0%3BMQ%3D20%3BFQ%3D11.2%3BPV4%3D1%2C0.015%2C1%2C8e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C54:40 scaffold1896 SAMTools SNP 29622 29622 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C23%2C0%3BMQ%3D20%3BFQ%3D19.3%3BPV4%3D1%2C0.019%2C1%2C1.9e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C54:49 scaffold1897 SAMTools SNP 129520 129520 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1897 SAMTools SNP 129521 129521 8.93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold1897 SAMTools SNP 147388 147388 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.0091%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1897 SAMTools SNP 147390 147390 6.99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.002%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold1897 SAMTools SNP 147983 147983 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1897 SAMTools SNP 320842 320842 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C9%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C2.4e-05%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C44:47 scaffold1897 SAMTools SNP 320844 320844 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C9%3BMQ%3D20%3BFQ%3D3.55%3BPV4%3D1%2C3.2e-05%2C1%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C28:31 scaffold1897 SAMTools SNP 501196 501196 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1897 SAMTools SNP 501197 501197 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1897 SAMTools SNP 624426 624426 6.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1898 SAMTools SNP 24023 24023 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1898 SAMTools SNP 24684 24684 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.4%2C1%2C1.7e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold1898 SAMTools SNP 24748 24748 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1898 SAMTools SNP 241486 241486 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold19 SAMTools SNP 39182 39182 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold19 SAMTools SNP 39184 39184 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1900 SAMTools SNP 220946 220946 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold192 SAMTools SNP 117683 117683 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold192 SAMTools SNP 175452 175452 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold192 SAMTools SNP 175454 175454 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold192 SAMTools SNP 718798 718798 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C54%2C0%2C36%3BMQ%3D20%3BFQ%3D10.1%3BPV4%3D1%2C0.00029%2C1%2C1.1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C47:38 scaffold192 SAMTools SNP 718803 718803 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C18%3BMQ%3D20%3BFQ%3D19.5%3BPV4%3D1%2C2e-10%2C1%2C2.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C56:49 scaffold192 SAMTools SNP 718804 718804 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C18%3BMQ%3D20%3BFQ%3D22.4%3BPV4%3D1%2C0.00016%2C1%2C1.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C58:52 scaffold192 SAMTools SNP 718809 718809 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C9%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C0.0041%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C62:39 scaffold192 SAMTools SNP 718810 718810 34 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C15%3BMQ%3D20%3BFQ%3D23.8%3BPV4%3D1%2C0.021%2C1%2C4.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C51:54 scaffold192 SAMTools SNP 718844 718844 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.061%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold192 SAMTools SNP 718855 718855 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold192 SAMTools SNP 718856 718856 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold192 SAMTools SNP 719350 719350 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold192 SAMTools SNP 721456 721456 7.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0010%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-10.5%3BPV4%3D1%2C1%2C1%2C4.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C17:22 scaffold193 SAMTools SNP 95670 95670 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C24%2C0:45 scaffold193 SAMTools SNP 361981 361981 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold193 SAMTools SNP 362131 362131 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0164%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D20%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C39%2C0:75 scaffold194 SAMTools SNP 131196 131196 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold198 SAMTools SNP 58884 58884 5.29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold20 SAMTools SNP 318378 318378 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold20 SAMTools SNP 402075 402075 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold20 SAMTools SNP 402076 402076 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold20 SAMTools SNP 402101 402101 15.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.0019%2C1%2C2.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold20 SAMTools SNP 402102 402102 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.16%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold20 SAMTools SNP 500391 500391 27.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0007%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold20 SAMTools SNP 552123 552123 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold200 SAMTools SNP 99188 99188 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold201 SAMTools SNP 44028 44028 8.93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold201 SAMTools SNP 44029 44029 8.93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold201 SAMTools SNP 53617 53617 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold201 SAMTools SNP 53618 53618 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold201 SAMTools SNP 59262 59262 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold203 SAMTools SNP 326973 326973 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold203 SAMTools SNP 327003 327003 9.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D8%2C0%2C32%2C0%3BMQ%3D20%3BFQ%3D-24%3BPV4%3D1%2C0.055%2C1%2C8.1e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C3:7 scaffold203 SAMTools SNP 331137 331137 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold203 SAMTools SNP 370153 370153 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.066%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C38:41 scaffold203 SAMTools SNP 370154 370154 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.015%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C38:41 scaffold204 SAMTools SNP 97382 97382 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold204 SAMTools SNP 717614 717614 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold204 SAMTools SNP 717616 717616 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0010%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold204 SAMTools SNP 940389 940389 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D9.96%3BPV4%3D1%2C0.058%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C46:38 scaffold210 SAMTools SNP 322388 322388 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold210 SAMTools SNP 332675 332675 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold210 SAMTools SNP 394796 394796 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold211 SAMTools SNP 186090 186090 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold211 SAMTools SNP 939812 939812 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0189%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold211 SAMTools SNP 939819 939819 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.00035%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold211 SAMTools SNP 939821 939821 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0026%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold211 SAMTools SNP 947441 947441 30.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D-16.1%3BPV4%3D1%2C0.0021%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C11:14 scaffold211 SAMTools SNP 947443 947443 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.051%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C33:36 scaffold215 SAMTools SNP 103671 103671 12.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold218 SAMTools SNP 18015 18015 27.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold218 SAMTools SNP 101797 101797 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold218 SAMTools SNP 101798 101798 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold219 SAMTools SNP 392068 392068 14.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold22 SAMTools SNP 530176 530176 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold22 SAMTools SNP 747083 747083 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold22 SAMTools SNP 1465988 1465988 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold22 SAMTools SNP 1466019 1466019 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold222 SAMTools SNP 37836 37836 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold222 SAMTools SNP 37837 37837 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold222 SAMTools SNP 56816 56816 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold224 SAMTools SNP 44997 44997 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold224 SAMTools SNP 44999 44999 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold224 SAMTools SNP 46848 46848 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C6%3BMQ%3D20%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C3.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C65:36 scaffold224 SAMTools SNP 46866 46866 32.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.1%2C1%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C8:11 scaffold224 SAMTools SNP 48778 48778 25.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D19%3BFQ%3D-12.3%3BPV4%3D1%2C0.28%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C15:18 scaffold224 SAMTools SNP 48779 48779 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D19%3BFQ%3D-11.3%3BPV4%3D1%2C0.01%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C16:19 scaffold226 SAMTools SNP 771437 771437 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold226 SAMTools SNP 869765 869765 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold226 SAMTools SNP 961303 961303 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold226 SAMTools SNP 1014017 1014017 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold227 SAMTools SNP 72614 72614 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold232 SAMTools SNP 14450 14450 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold232 SAMTools SNP 18987 18987 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.00083%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold237 SAMTools SNP 148324 148324 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold237 SAMTools SNP 166519 166519 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D20%3BFQ%3D4.11%3BPV4%3D1%2C0.069%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C29:32 scaffold237 SAMTools SNP 166524 166524 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold237 SAMTools SNP 166525 166525 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold237 SAMTools SNP 639309 639309 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold241 SAMTools SNP 497834 497834 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold241 SAMTools SNP 497836 497836 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold241 SAMTools SNP 501773 501773 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold241 SAMTools SNP 501795 501795 5.47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5019%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-7.13%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C21:26 scaffold241 SAMTools SNP 843115 843115 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0029%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold241 SAMTools SNP 843116 843116 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.011%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold241 SAMTools SNP 843119 843119 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D15%3BPV4%3D1%2C0.19%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C56:44 scaffold241 SAMTools SNP 843515 843515 7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5031%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-8.7%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C19:24 scaffold241 SAMTools SNP 903619 903619 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold242 SAMTools SNP 69630 69630 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold242 SAMTools SNP 69632 69632 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold243 SAMTools SNP 48317 48317 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold243 SAMTools SNP 48318 48318 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold243 SAMTools SNP 150790 150790 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold243 SAMTools SNP 150857 150857 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold248 SAMTools SNP 90775 90775 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C61:47 scaffold248 SAMTools SNP 90847 90847 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0171%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold248 SAMTools SNP 236472 236472 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D20%3BFQ%3D10.5%3BPV4%3D1%2C7.1e-05%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C38:40 scaffold251 SAMTools SNP 56001 56001 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold257 SAMTools SNP 184376 184376 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold257 SAMTools SNP 449159 449159 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold257 SAMTools SNP 449161 449161 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold257 SAMTools SNP 515920 515920 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold257 SAMTools SNP 1235265 1235265 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold257 SAMTools SNP 1235531 1235531 6.17 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold257 SAMTools SNP 1235534 1235534 6.17 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold257 SAMTools SNP 1390746 1390746 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D20%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C48%2C0:93 scaffold257 SAMTools SNP 1390832 1390832 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C11%3BMQ%3D20%3BFQ%3D22.8%3BPV4%3D1%2C2.9e-09%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C63:53 scaffold257 SAMTools SNP 1397640 1397640 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D7.79%3BPV4%3D1%2C2.2e-11%2C1%2C5.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C34:37 scaffold257 SAMTools SNP 1397665 1397665 32.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.6243%3BAC1%3D1%3BDP4%3D3%2C0%2C14%2C0%3BMQ%3D20%3BFQ%3D-23%3BPV4%3D1%2C0.21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C4:7 scaffold264 SAMTools SNP 20055 20055 35.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold266 SAMTools SNP 66093 66093 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D20%3BPV4%3D1%2C1.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C64:50 scaffold267 SAMTools SNP 143524 143524 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold267 SAMTools SNP 259912 259912 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold267 SAMTools SNP 259913 259913 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold268 SAMTools SNP 44193 44193 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold268 SAMTools SNP 44195 44195 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold269 SAMTools SNP 106783 106783 8.93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0010%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold269 SAMTools SNP 140699 140699 18.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold269 SAMTools SNP 168061 168061 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold269 SAMTools SNP 168193 168193 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.011%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold269 SAMTools SNP 290693 290693 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold269 SAMTools SNP 290711 290711 33.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D20%3BFQ%3D-31%3BPV4%3D1%2C0.0023%2C1%2C5.2e-08;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C4%2C0:7 scaffold270 SAMTools SNP 4978 4978 7.19 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5335%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D18%3BFQ%3D-18.1%3BPV4%3D1%2C0.028%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C9:13 scaffold271 SAMTools SNP 269908 269908 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold271 SAMTools SNP 269909 269909 35.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold271 SAMTools SNP 269923 269923 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D22.6%3BPV4%3D1%2C0.0033%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C60:53 scaffold271 SAMTools SNP 271833 271833 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C0.23%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C52:46 scaffold271 SAMTools SNP 271868 271868 31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C21%2C0%3BMQ%3D20%3BFQ%3D23.6%3BPV4%3D1%2C0.00018%2C1%2C1.5e-39;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C51:54 scaffold271 SAMTools SNP 271869 271869 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C23%2C0%3BMQ%3D20%3BFQ%3D20.8%3BPV4%3D1%2C8.7e-11%2C1%2C9.5e-44;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C48:51 scaffold271 SAMTools SNP 273807 273807 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold271 SAMTools SNP 273883 273883 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold271 SAMTools SNP 360582 360582 6.21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.34%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C22:27 scaffold271 SAMTools SNP 371973 371973 21.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-10.4%3BPV4%3D1%2C1.5e-05%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C17:20 scaffold271 SAMTools SNP 435586 435586 17.7 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.031%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold271 SAMTools SNP 653080 653080 8.22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold271 SAMTools SNP 833474 833474 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold274 SAMTools SNP 319006 319006 5.29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold279 SAMTools SNP 108659 108659 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold279 SAMTools SNP 108661 108661 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold279 SAMTools SNP 209634 209634 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold280 SAMTools SNP 292369 292369 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold280 SAMTools SNP 293547 293547 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold280 SAMTools SNP 701200 701200 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.023%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold285 SAMTools SNP 29768 29768 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold285 SAMTools SNP 29769 29769 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold285 SAMTools SNP 29802 29802 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C0%2C38%2C0%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C1.9e-05%2C1%2C4.1e-25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold285 SAMTools SNP 29803 29803 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C0%2C39%2C0%3BMQ%3D20%3BFQ%3D12.7%3BPV4%3D1%2C4.2e-12%2C1%2C5.2e-28;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C49:42 scaffold285 SAMTools SNP 100513 100513 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold285 SAMTools SNP 148637 148637 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.15%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold285 SAMTools SNP 148665 148665 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C4.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C63:36 scaffold285 SAMTools SNP 148666 148666 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C0.056%2C1%2C1.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C60:39 scaffold286 SAMTools SNP 429390 429390 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold287 SAMTools SNP 21647 21647 29.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-28%3BPV4%3D1%2C0.1%2C1%2C2e-08;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C1%2C0:4 scaffold287 SAMTools SNP 21648 21648 26.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-13.2%3BPV4%3D1%2C0.025%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C14:17 scaffold287 SAMTools SNP 21653 21653 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.16%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold288 SAMTools SNP 223546 223546 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold288 SAMTools SNP 436329 436329 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold288 SAMTools SNP 573802 573802 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D18%3BPV4%3D1%2C0.0018%2C1%2C8.2e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C63:48 scaffold288 SAMTools SNP 576014 576014 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold288 SAMTools SNP 576016 576016 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold288 SAMTools SNP 576028 576028 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.0026%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C38:41 scaffold288 SAMTools SNP 576030 576030 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.00029%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C38:41 scaffold288 SAMTools SNP 576672 576672 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.14%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold290 SAMTools SNP 99596 99596 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold290 SAMTools SNP 99672 99672 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold290 SAMTools SNP 317377 317377 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold292 SAMTools SNP 2495 2495 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold296 SAMTools SNP 175129 175129 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D20%3BFQ%3D9.29%3BPV4%3D1%2C0.0023%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C48:37 scaffold298 SAMTools SNP 492158 492158 8.93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold298 SAMTools SNP 492163 492163 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0015%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold3 SAMTools SNP 89584 89584 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0053%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold3 SAMTools SNP 89586 89586 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D20%3BFQ%3D15%3BPV4%3D1%2C0.0022%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C57:44 scaffold3 SAMTools SNP 89589 89589 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0010%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0035%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold3 SAMTools SNP 89592 89592 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold3 SAMTools SNP 89593 89593 8.93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.048%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold3 SAMTools SNP 97679 97679 6.99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.016%2C1%2C7.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold3 SAMTools SNP 99025 99025 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.00039%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold3 SAMTools SNP 99026 99026 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0012%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold3 SAMTools SNP 434527 434527 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C1.2e-06%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C33:36 scaffold3 SAMTools SNP 883900 883900 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold3 SAMTools SNP 884183 884183 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold3 SAMTools SNP 910973 910973 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold3 SAMTools SNP 910974 910974 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold3 SAMTools SNP 962425 962425 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold301 SAMTools SNP 264325 264325 5.47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5019%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-7.13%3BPV4%3D1%2C0.49%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C21:26 scaffold301 SAMTools SNP 264327 264327 6.99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.46%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold301 SAMTools SNP 754329 754329 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold301 SAMTools SNP 754330 754330 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold301 SAMTools SNP 775966 775966 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold301 SAMTools SNP 777516 777516 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold304 SAMTools SNP 193679 193679 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold304 SAMTools SNP 393240 393240 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D5%2C0%2C12%2C0%3BMQ%3D20%3BFQ%3D4.13%3BPV4%3D1%2C8.4e-05%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C29:32 scaffold304 SAMTools SNP 398243 398243 35.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold309 SAMTools SNP 31675 31675 6.99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold309 SAMTools SNP 85176 85176 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold311 SAMTools SNP 79753 79753 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold313 SAMTools SNP 8053 8053 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold313 SAMTools SNP 319646 319646 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.0022%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold313 SAMTools SNP 497209 497209 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold313 SAMTools SNP 497210 497210 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold313 SAMTools SNP 498654 498654 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold313 SAMTools SNP 500474 500474 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C8%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C2.4e-05%2C1%2C4.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C39:42 scaffold313 SAMTools SNP 500481 500481 17.7 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.0051%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold313 SAMTools SNP 500482 500482 27.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold313 SAMTools SNP 506990 506990 8.93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.0041%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold313 SAMTools SNP 509486 509486 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold313 SAMTools SNP 509488 509488 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold313 SAMTools SNP 972524 972524 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.15%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold313 SAMTools SNP 972555 972555 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold313 SAMTools SNP 1046234 1046234 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold313 SAMTools SNP 1130931 1130931 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold315 SAMTools SNP 79623 79623 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold315 SAMTools SNP 79624 79624 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold315 SAMTools SNP 161266 161266 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold315 SAMTools SNP 165427 165427 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0042%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D7.71%3BPV4%3D1%2C0.0078%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C34:37 scaffold315 SAMTools SNP 165429 165429 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D15%3BPV4%3D1%2C0.0087%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C57:44 scaffold315 SAMTools SNP 165433 165433 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C0.068%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C65:39 scaffold315 SAMTools SNP 165434 165434 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C0.029%2C1%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C65:39 scaffold315 SAMTools SNP 490120 490120 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D20%3BFQ%3D18.5%3BPV4%3D1%2C0.47%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C48:48 scaffold315 SAMTools SNP 490121 490121 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D20%3BFQ%3D15.6%3BPV4%3D1%2C1%2C1%2C2.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C45:45 scaffold315 SAMTools SNP 493400 493400 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0010%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold315 SAMTools SNP 496407 496407 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C10%3BMQ%3D20%3BFQ%3D7.78%3BPV4%3D1%2C0.00094%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C57:34 scaffold315 SAMTools SNP 496408 496408 22 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C13%3BMQ%3D20%3BFQ%3D24.6%3BPV4%3D1%2C1.1e-07%2C1%2C1.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C62:55 scaffold315 SAMTools SNP 630037 630037 8.93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.029%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold315 SAMTools SNP 630040 630040 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold317 SAMTools SNP 19381 19381 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold321 SAMTools SNP 299068 299068 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.065%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold322 SAMTools SNP 52291 52291 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold324 SAMTools SNP 297208 297208 13.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D17%3BFQ%3D-32%3BPV4%3D1%2C0.044%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C5%2C0:8 scaffold324 SAMTools SNP 297215 297215 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D19%3BFQ%3D4.06%3BPV4%3D1%2C0.00072%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C33:29 scaffold324 SAMTools SNP 297217 297217 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D19%3BFQ%3D4.06%3BPV4%3D1%2C0.00012%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C33:29 scaffold324 SAMTools SNP 297222 297222 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D19%3BFQ%3D18.5%3BPV4%3D1%2C7.3e-05%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C49:48 scaffold324 SAMTools SNP 297224 297224 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D19%3BFQ%3D12.2%3BPV4%3D1%2C9.9e-05%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C55:41 scaffold324 SAMTools SNP 297470 297470 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0140%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold324 SAMTools SNP 297973 297973 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold329 SAMTools SNP 130658 130658 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold334 SAMTools SNP 66187 66187 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0197%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold334 SAMTools SNP 66189 66189 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold334 SAMTools SNP 130346 130346 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold334 SAMTools SNP 130623 130623 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0080%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold334 SAMTools SNP 498399 498399 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D20%3BFQ%3D13.9%3BPV4%3D1%2C1.2e-08%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C52:43 scaffold334 SAMTools SNP 556129 556129 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold335 SAMTools SNP 211719 211719 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C11%3BMQ%3D20%3BFQ%3D-5.45%3BPV4%3D1%2C9e-11%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C23:26 scaffold335 SAMTools SNP 211978 211978 27.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold335 SAMTools SNP 215950 215950 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold335 SAMTools SNP 218181 218181 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C7%3BMQ%3D20%3BFQ%3D12.3%3BPV4%3D1%2C0.089%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C65:41 scaffold335 SAMTools SNP 218182 218182 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C6%3BMQ%3D20%3BFQ%3D8.65%3BPV4%3D1%2C0.028%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C65:36 scaffold335 SAMTools SNP 279549 279549 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C6%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C6.2e-10%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C62:39 scaffold335 SAMTools SNP 429291 429291 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold335 SAMTools SNP 429302 429302 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold337 SAMTools SNP 514103 514103 15.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-11.3%3BPV4%3D1%2C0.22%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C16:19 scaffold337 SAMTools SNP 514181 514181 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D4.11%3BPV4%3D1%2C2.8e-06%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C29:32 scaffold337 SAMTools SNP 1452339 1452339 17.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.021%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold337 SAMTools SNP 1552234 1552234 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold338 SAMTools SNP 197394 197394 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold338 SAMTools SNP 197396 197396 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold34 SAMTools SNP 2090 2090 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold34 SAMTools SNP 2156 2156 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold34 SAMTools SNP 265648 265648 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold34 SAMTools SNP 288655 288655 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold34 SAMTools SNP 392950 392950 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold340 SAMTools SNP 263161 263161 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold343 SAMTools SNP 3758 3758 43 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D20%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C105%2C0:99 scaffold343 SAMTools SNP 261875 261875 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold348 SAMTools SNP 9316 9316 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold351 SAMTools SNP 13381 13381 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold351 SAMTools SNP 13431 13431 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold351 SAMTools SNP 684496 684496 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold352 SAMTools SNP 51436 51436 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0070%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold354 SAMTools SNP 503743 503743 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.0026%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold354 SAMTools SNP 503744 503744 6.99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.0042%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold361 SAMTools SNP 238409 238409 6.99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.18%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold361 SAMTools SNP 238410 238410 6.99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.016%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold361 SAMTools SNP 264559 264559 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D4.28%3BPV4%3D1%2C1e-05%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C31:32 scaffold364 SAMTools SNP 126940 126940 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold364 SAMTools SNP 130834 130834 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold364 SAMTools SNP 532257 532257 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold365 SAMTools SNP 349778 349778 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C131%3BMQ%3D20%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C255%2C0:99 scaffold365 SAMTools SNP 349802 349802 33.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C2.5e-08%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C2:5 scaffold365 SAMTools SNP 572230 572230 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold365 SAMTools SNP 586550 586550 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold366 SAMTools SNP 22896 22896 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold366 SAMTools SNP 23102 23102 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C0.0015%2C1%2C9.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C52:46 scaffold366 SAMTools SNP 83593 83593 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold368 SAMTools SNP 268296 268296 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold369 SAMTools SNP 80645 80645 39.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D20%3BFQ%3D-40%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C13%2C0:23 scaffold369 SAMTools SNP 81275 81275 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold370 SAMTools SNP 313403 313403 35.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold370 SAMTools SNP 313406 313406 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C66%2C0%3BMQ%3D20%3BFQ%3D-149%3BPV4%3D1%2C1%2C1%2C1.9e-09;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C122%2C0:99 scaffold370 SAMTools SNP 313413 313413 59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C0%3BMQ%3D20%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C238%2C0:99 scaffold370 SAMTools SNP 894791 894791 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold370 SAMTools SNP 894793 894793 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold370 SAMTools SNP 921735 921735 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0399%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold372 SAMTools SNP 73048 73048 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold372 SAMTools SNP 105823 105823 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold372 SAMTools SNP 108343 108343 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0016%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold372 SAMTools SNP 119881 119881 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold372 SAMTools SNP 119884 119884 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold376 SAMTools SNP 6873 6873 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold376 SAMTools SNP 6916 6916 19.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5128%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-14.2%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C13:16 scaffold376 SAMTools SNP 210921 210921 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold376 SAMTools SNP 222259 222259 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0159%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold377 SAMTools SNP 76346 76346 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold377 SAMTools SNP 133469 133469 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold377 SAMTools SNP 133470 133470 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold377 SAMTools SNP 474633 474633 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0176%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold377 SAMTools SNP 474966 474966 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold378 SAMTools SNP 22665 22665 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold378 SAMTools SNP 247099 247099 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0156%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold378 SAMTools SNP 393549 393549 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold378 SAMTools SNP 440018 440018 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold383 SAMTools SNP 326965 326965 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold383 SAMTools SNP 346225 346225 39.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D-37%3BPV4%3D1%2C0.0099%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C10%2C0:17 scaffold383 SAMTools SNP 346226 346226 39.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D-37%3BPV4%3D1%2C0.015%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C10%2C0:17 scaffold383 SAMTools SNP 392876 392876 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold383 SAMTools SNP 664495 664495 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0176%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold386 SAMTools SNP 304312 304312 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C0.44%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C59:41 scaffold388 SAMTools SNP 11625 11625 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C7%3BMQ%3D20%3BFQ%3D18%3BPV4%3D1%2C0.073%2C1%2C6.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C64:48 scaffold388 SAMTools SNP 11668 11668 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold388 SAMTools SNP 29271 29271 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold388 SAMTools SNP 29272 29272 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold388 SAMTools SNP 29860 29860 35.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold388 SAMTools SNP 29862 29862 35.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold388 SAMTools SNP 30513 30513 6.99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold388 SAMTools SNP 30523 30523 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C9.2e-06%2C1%2C5.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C39:42 scaffold388 SAMTools SNP 30524 30524 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C3.4e-07%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C39:42 scaffold388 SAMTools SNP 32316 32316 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C11%2C0%3BMQ%3D20%3BFQ%3D25.7%3BPV4%3D1%2C3.5e-13%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C64:56 scaffold388 SAMTools SNP 32326 32326 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D23%2C0%2C11%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C2.7e-14%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C58:30 scaffold388 SAMTools SNP 80987 80987 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold388 SAMTools SNP 120904 120904 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold388 SAMTools SNP 120924 120924 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold39262 SAMTools SNP 3712 3712 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold39268 SAMTools SNP 20826 20826 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold39268 SAMTools SNP 20925 20925 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold393 SAMTools SNP 463237 463237 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold393 SAMTools SNP 463238 463238 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold393 SAMTools SNP 714092 714092 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold394 SAMTools SNP 264737 264737 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C5%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C7.5e-06%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C63:39 scaffold394 SAMTools SNP 264749 264749 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold394 SAMTools SNP 264886 264886 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold394 SAMTools SNP 402224 402224 24.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold394 SAMTools SNP 617067 617067 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold394 SAMTools SNP 617068 617068 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold394 SAMTools SNP 671513 671513 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D10.3%3BPV4%3D1%2C0.12%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold395 SAMTools SNP 202238 202238 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold39524 SAMTools SNP 27225 27225 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0019%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold39524 SAMTools SNP 30839 30839 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold39536 SAMTools SNP 50964 50964 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold39574 SAMTools SNP 41519 41519 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0171%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold39574 SAMTools SNP 69004 69004 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold39574 SAMTools SNP 69006 69006 42.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D-40%3BPV4%3D1%2C0.02%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C13%2C0:23 scaffold39582 SAMTools SNP 21305 21305 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold39594 SAMTools SNP 33570 33570 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold39594 SAMTools SNP 33571 33571 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold396 SAMTools SNP 265890 265890 5.29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold396 SAMTools SNP 279574 279574 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold396 SAMTools SNP 279576 279576 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold39720 SAMTools SNP 40373 40373 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold39720 SAMTools SNP 40374 40374 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold39740 SAMTools SNP 10908 10908 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold39778 SAMTools SNP 52580 52580 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold398 SAMTools SNP 92605 92605 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold398 SAMTools SNP 92606 92606 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold39800 SAMTools SNP 61254 61254 46.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold39800 SAMTools SNP 61255 61255 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold399 SAMTools SNP 15677 15677 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C4e-07%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold39990 SAMTools SNP 13610 13610 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold4 SAMTools SNP 12735 12735 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold4 SAMTools SNP 12736 12736 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold4 SAMTools SNP 102105 102105 27.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold4 SAMTools SNP 102106 102106 27.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold4 SAMTools SNP 102550 102550 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.042%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold4 SAMTools SNP 102562 102562 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D21.9%3BPV4%3D1%2C0.37%2C1%2C4.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C64:52 scaffold4 SAMTools SNP 107095 107095 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C0.2%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C39:42 scaffold4 SAMTools SNP 107100 107100 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold400 SAMTools SNP 36221 36221 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold400 SAMTools SNP 36223 36223 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold400 SAMTools SNP 143676 143676 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold400 SAMTools SNP 249106 249106 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold400 SAMTools SNP 256571 256571 29.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold40002 SAMTools SNP 47992 47992 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D9.45%3BPV4%3D1%2C1%2C1%2C8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C53:37 scaffold40006 SAMTools SNP 72249 72249 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold40006 SAMTools SNP 72263 72263 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.0066%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C57:33 scaffold401 SAMTools SNP 53655 53655 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0254%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold401 SAMTools SNP 54772 54772 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D3.47%3BPV4%3D1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C28:31 scaffold401 SAMTools SNP 57281 57281 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0025%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold40100 SAMTools SNP 41999 41999 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40114 SAMTools SNP 77756 77756 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40114 SAMTools SNP 77758 77758 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40114 SAMTools SNP 85086 85086 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C16%2C0%3BMQ%3D20%3BFQ%3D14.9%3BPV4%3D1%2C2.5e-05%2C1%2C9.1e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C54:44 scaffold40114 SAMTools SNP 85087 85087 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C17%2C0%3BMQ%3D20%3BFQ%3D14%3BPV4%3D1%2C1e-09%2C1%2C3e-22;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C54:43 scaffold40120 SAMTools SNP 17563 17563 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40120 SAMTools SNP 17565 17565 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40140 SAMTools SNP 5819 5819 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40140 SAMTools SNP 5820 5820 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40150 SAMTools SNP 61209 61209 35.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold40156 SAMTools SNP 53092 53092 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0010%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold40182 SAMTools SNP 12600 12600 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.00021%2C1%2C1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold40182 SAMTools SNP 15468 15468 11.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold402 SAMTools SNP 301100 301100 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold402 SAMTools SNP 301124 301124 30.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D-16.1%3BPV4%3D1%2C0.00035%2C1%2C8.5e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C11:14 scaffold402 SAMTools SNP 415289 415289 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D20%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C33%2C0:63 scaffold402 SAMTools SNP 415290 415290 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D20%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C33%2C0:63 scaffold402 SAMTools SNP 419978 419978 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold402 SAMTools SNP 420009 420009 6.99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C1%2C1%2C6.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold402 SAMTools SNP 464308 464308 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold402 SAMTools SNP 464309 464309 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40230 SAMTools SNP 35732 35732 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40346 SAMTools SNP 13762 13762 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40346 SAMTools SNP 13763 13763 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40390 SAMTools SNP 53647 53647 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40390 SAMTools SNP 53648 53648 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold404 SAMTools SNP 104359 104359 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold40442 SAMTools SNP 21991 21991 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0182%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold406 SAMTools SNP 418093 418093 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold406 SAMTools SNP 418094 418094 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold406 SAMTools SNP 801155 801155 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40612 SAMTools SNP 84890 84890 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold40638 SAMTools SNP 4583 4583 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40638 SAMTools SNP 4823 4823 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C0.11%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C26:29 scaffold40638 SAMTools SNP 4884 4884 41.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D-40%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C13%2C0:23 scaffold40664 SAMTools SNP 9927 9927 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold40664 SAMTools SNP 9928 9928 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40740 SAMTools SNP 13366 13366 17.7 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.12%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold40740 SAMTools SNP 13368 13368 17.7 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.014%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold40740 SAMTools SNP 16814 16814 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40740 SAMTools SNP 16816 16816 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40740 SAMTools SNP 91665 91665 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold40744 SAMTools SNP 39965 39965 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40744 SAMTools SNP 39966 39966 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40786 SAMTools SNP 44734 44734 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0186%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold408 SAMTools SNP 145937 145937 3.41 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C13%2C7%2C31%2C0%2C28:4 scaffold408 SAMTools SNP 208002 208002 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold408 SAMTools SNP 496622 496622 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold408 SAMTools SNP 603036 603036 41.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold408 SAMTools SNP 603099 603099 6.95 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold408 SAMTools SNP 604373 604373 5.29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold408 SAMTools SNP 645988 645988 6.99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.022%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold408 SAMTools SNP 804202 804202 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0008%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold40820 SAMTools SNP 3946 3946 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold40820 SAMTools SNP 3955 3955 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.025%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold40820 SAMTools SNP 3958 3958 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D27.6%3BPV4%3D1%2C0.00025%2C1%2C3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C60:58 scaffold40820 SAMTools SNP 33931 33931 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C8%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C4.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C63:40 scaffold40820 SAMTools SNP 33937 33937 59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D20%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C39%2C0:75 scaffold40820 SAMTools SNP 35100 35100 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.00021%2C1%2C6.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold40820 SAMTools SNP 36845 36845 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C11%3BMQ%3D20%3BFQ%3D12.3%3BPV4%3D1%2C0.0047%2C1%2C6.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C39:42 scaffold40820 SAMTools SNP 36846 36846 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C12%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C0.052%2C1%2C9.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C37:40 scaffold40820 SAMTools SNP 36851 36851 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.027%2C1%2C9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold40820 SAMTools SNP 62211 62211 6.99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.0084%2C1%2C0.00072;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold40832 SAMTools SNP 9465 9465 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40832 SAMTools SNP 9466 9466 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40874 SAMTools SNP 95135 95135 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40928 SAMTools SNP 36737 36737 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold40928 SAMTools SNP 71038 71038 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40938 SAMTools SNP 67993 67993 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40960 SAMTools SNP 39203 39203 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D20%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C46:46 scaffold40960 SAMTools SNP 39204 39204 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D20%3BFQ%3D9.29%3BPV4%3D1%2C0.26%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C48:37 scaffold40960 SAMTools SNP 41737 41737 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40960 SAMTools SNP 41738 41738 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40960 SAMTools SNP 42759 42759 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40960 SAMTools SNP 42761 42761 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40960 SAMTools SNP 44321 44321 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40960 SAMTools SNP 44322 44322 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40960 SAMTools SNP 44344 44344 6.99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0020%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold40960 SAMTools SNP 44858 44858 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0176%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40960 SAMTools SNP 48716 48716 7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5031%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.7%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C19:24 scaffold40960 SAMTools SNP 50901 50901 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0010%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.012%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold40960 SAMTools SNP 50903 50903 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.041%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold40974 SAMTools SNP 93468 93468 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0186%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold410 SAMTools SNP 334281 334281 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold410 SAMTools SNP 334283 334283 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41136 SAMTools SNP 5588 5588 6.21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.34%3BPV4%3D1%2C0.0033%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C22:27 scaffold41136 SAMTools SNP 53706 53706 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C0.029%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C62:47 scaffold41136 SAMTools SNP 53708 53708 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C0.00057%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C62:47 scaffold41174 SAMTools SNP 79680 79680 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.13%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold41174 SAMTools SNP 79718 79718 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold41174 SAMTools SNP 79720 79720 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold412 SAMTools SNP 250230 250230 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold412 SAMTools SNP 250231 250231 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold412 SAMTools SNP 282598 282598 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold412 SAMTools SNP 282610 282610 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0010%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.016%2C1%2C0.00072;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold412 SAMTools SNP 282611 282611 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0010%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.012%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold41212 SAMTools SNP 14647 14647 51 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D20%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C36%2C0%2C72%2C4%2C66:69 scaffold41212 SAMTools SNP 14655 14655 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C8%3BMQ%3D20%3BFQ%3D18.9%3BPV4%3D1%2C0.36%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C46:49 scaffold413 SAMTools SNP 520299 520299 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold413 SAMTools SNP 532388 532388 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C11%2C0%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C61:47 scaffold41312 SAMTools SNP 92208 92208 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41316 SAMTools SNP 45318 45318 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold41316 SAMTools SNP 45759 45759 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold41316 SAMTools SNP 53529 53529 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41316 SAMTools SNP 53530 53530 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41344 SAMTools SNP 8060 8060 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D20%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C24%2C0:45 scaffold41358 SAMTools SNP 58968 58968 6.99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.0027%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold41358 SAMTools SNP 108812 108812 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41448 SAMTools SNP 81808 81808 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41448 SAMTools SNP 81809 81809 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41452 SAMTools SNP 33797 33797 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41452 SAMTools SNP 33799 33799 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41568 SAMTools SNP 103228 103228 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41568 SAMTools SNP 117198 117198 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41572 SAMTools SNP 115480 115480 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41572 SAMTools SNP 115515 115515 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41588 SAMTools SNP 70978 70978 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold41588 SAMTools SNP 70980 70980 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold41588 SAMTools SNP 71118 71118 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C0.0027%2C1%2C9.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C63:39 scaffold41588 SAMTools SNP 71120 71120 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C0.028%2C1%2C6.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C63:39 scaffold41598 SAMTools SNP 78793 78793 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold41660 SAMTools SNP 79361 79361 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41666 SAMTools SNP 14717 14717 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41666 SAMTools SNP 64784 64784 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0098%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41722 SAMTools SNP 7345 7345 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41730 SAMTools SNP 59709 59709 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold41744 SAMTools SNP 5407 5407 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41744 SAMTools SNP 5408 5408 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41744 SAMTools SNP 13880 13880 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41744 SAMTools SNP 13882 13882 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41772 SAMTools SNP 3263 3263 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41772 SAMTools SNP 3264 3264 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41792 SAMTools SNP 12527 12527 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold41792 SAMTools SNP 12543 12543 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold418 SAMTools SNP 131236 131236 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41806 SAMTools SNP 112748 112748 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold41812 SAMTools SNP 81666 81666 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold41824 SAMTools SNP 62507 62507 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41824 SAMTools SNP 62546 62546 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41824 SAMTools SNP 70122 70122 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold41824 SAMTools SNP 133132 133132 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41832 SAMTools SNP 42815 42815 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41832 SAMTools SNP 42817 42817 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41832 SAMTools SNP 92681 92681 8.93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold41832 SAMTools SNP 92683 92683 8.93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold41852 SAMTools SNP 104875 104875 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41852 SAMTools SNP 104876 104876 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41876 SAMTools SNP 54033 54033 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41876 SAMTools SNP 54034 54034 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41876 SAMTools SNP 79204 79204 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41876 SAMTools SNP 79205 79205 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41876 SAMTools SNP 79214 79214 15.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.035%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold41876 SAMTools SNP 79215 79215 26.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-13.2%3BPV4%3D1%2C0.067%2C1%2C5.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C14:17 scaffold41890 SAMTools SNP 135719 135719 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.028%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold41890 SAMTools SNP 135721 135721 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.015%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold41896 SAMTools SNP 75417 75417 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C0.018%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C52:46 scaffold41896 SAMTools SNP 75418 75418 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C0.22%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C59:41 scaffold41896 SAMTools SNP 75429 75429 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C14%2C0%3BMQ%3D20%3BFQ%3D31%3BPV4%3D1%2C9e-05%2C1%2C3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C61:61 scaffold41896 SAMTools SNP 75430 75430 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C16%2C0%3BMQ%3D20%3BFQ%3D29.6%3BPV4%3D1%2C5.3e-05%2C1%2C7.3e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C58:60 scaffold41896 SAMTools SNP 75432 75432 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C30%2C0%3BMQ%3D20%3BFQ%3D23.9%3BPV4%3D1%2C0.00011%2C1%2C1.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C53:54 scaffold41896 SAMTools SNP 75433 75433 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C27%2C0%3BMQ%3D20%3BFQ%3D23.9%3BPV4%3D1%2C0.00067%2C1%2C1.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C55:54 scaffold41896 SAMTools SNP 75439 75439 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C0%2C57%2C0%3BMQ%3D20%3BFQ%3D16.9%3BPV4%3D1%2C4.2e-09%2C1%2C6e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C50:47 scaffold41896 SAMTools SNP 75441 75441 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C0%2C64%2C0%3BMQ%3D20%3BFQ%3D19.1%3BPV4%3D1%2C4.7e-20%2C1%2C3.7e-26;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C49:49 scaffold419 SAMTools SNP 137239 137239 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold419 SAMTools SNP 192110 192110 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0010%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.29%2C1%2C4.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold419 SAMTools SNP 302394 302394 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold419 SAMTools SNP 302395 302395 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold419 SAMTools SNP 303800 303800 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0334%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold419 SAMTools SNP 304503 304503 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.019%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold419 SAMTools SNP 304504 304504 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.027%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold419 SAMTools SNP 305376 305376 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.12%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold419 SAMTools SNP 305377 305377 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.28%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold419 SAMTools SNP 305933 305933 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0218%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold419 SAMTools SNP 356256 356256 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold419 SAMTools SNP 525140 525140 8.93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0010%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.33%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold419 SAMTools SNP 742910 742910 32.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.00066%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C8:11 scaffold419 SAMTools SNP 742911 742911 32.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.00086%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C8:11 scaffold419 SAMTools SNP 761847 761847 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0159%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold419 SAMTools SNP 765704 765704 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0041%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.046%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold419 SAMTools SNP 766150 766150 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold419 SAMTools SNP 809415 809415 21.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C24%3BMQ%3D20%3BFQ%3D-13.2%3BPV4%3D1%2C0.0016%2C1%2C8.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C14:17 scaffold419 SAMTools SNP 809417 809417 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C15%3BMQ%3D20%3BFQ%3D-6.18%3BPV4%3D1%2C0.0043%2C1%2C7.3e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C22:25 scaffold419 SAMTools SNP 810649 810649 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold419 SAMTools SNP 810650 810650 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold419 SAMTools SNP 1013435 1013435 24.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.14%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold41900 SAMTools SNP 49610 49610 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold41900 SAMTools SNP 49675 49675 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold41900 SAMTools SNP 97899 97899 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41902 SAMTools SNP 39071 39071 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold41902 SAMTools SNP 39072 39072 35.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold41948 SAMTools SNP 45344 45344 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold41954 SAMTools SNP 68082 68082 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.11%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C19:22 scaffold41954 SAMTools SNP 68084 68084 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0037%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold41954 SAMTools SNP 126862 126862 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41968 SAMTools SNP 6826 6826 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41968 SAMTools SNP 6828 6828 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41970 SAMTools SNP 14428 14428 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41974 SAMTools SNP 116160 116160 7.25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C8:12 scaffold41994 SAMTools SNP 33827 33827 3.41 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C17%2C11%2C31%2C0%2C28:4 scaffold42 SAMTools SNP 256424 256424 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0224%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42 SAMTools SNP 512526 512526 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0034%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold42022 SAMTools SNP 7130 7130 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42070 SAMTools SNP 88910 88910 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold421 SAMTools SNP 173535 173535 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42112 SAMTools SNP 9149 9149 30.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C12%3BMQ%3D20%3BFQ%3D-16.1%3BPV4%3D1%2C1.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C11:14 scaffold42112 SAMTools SNP 89429 89429 27.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold42124 SAMTools SNP 106631 106631 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C11%3BMQ%3D20%3BFQ%3D29.3%3BPV4%3D1%2C0.066%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C61:59 scaffold42124 SAMTools SNP 106633 106633 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C6%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C0.035%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C62:47 scaffold42124 SAMTools SNP 106635 106635 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C0.015%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C52:46 scaffold42124 SAMTools SNP 106636 106636 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C0.023%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C54:37 scaffold42124 SAMTools SNP 106644 106644 24.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.03%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold42124 SAMTools SNP 108471 108471 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42124 SAMTools SNP 108472 108472 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42128 SAMTools SNP 44304 44304 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold42128 SAMTools SNP 54772 54772 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42128 SAMTools SNP 93990 93990 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42128 SAMTools SNP 116655 116655 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42130 SAMTools SNP 71154 71154 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.071%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold42130 SAMTools SNP 71155 71155 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold42130 SAMTools SNP 71167 71167 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42130 SAMTools SNP 71168 71168 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42130 SAMTools SNP 130220 130220 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0027%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42158 SAMTools SNP 47606 47606 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42158 SAMTools SNP 68579 68579 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D4.69%3BPV4%3D1%2C3e-05%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C34:31 scaffold42164 SAMTools SNP 11297 11297 17.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold42164 SAMTools SNP 11298 11298 17.7 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold42164 SAMTools SNP 109254 109254 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42164 SAMTools SNP 110121 110121 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42164 SAMTools SNP 110122 110122 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42164 SAMTools SNP 141678 141678 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold42236 SAMTools SNP 55732 55732 17.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.00028%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold42236 SAMTools SNP 55741 55741 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C1.3e-05%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C59:47 scaffold42236 SAMTools SNP 55880 55880 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C15%2C0%3BMQ%3D20%3BFQ%3D28.2%3BPV4%3D1%2C6.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C56:58 scaffold42236 SAMTools SNP 131376 131376 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42236 SAMTools SNP 131377 131377 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42252 SAMTools SNP 153276 153276 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold42302 SAMTools SNP 40459 40459 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42302 SAMTools SNP 40460 40460 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42302 SAMTools SNP 63049 63049 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42306 SAMTools SNP 99335 99335 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C22%3BMQ%3D20%3BFQ%3D21.3%3BPV4%3D1%2C1.2e-08%2C1%2C1.2e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C56:51 scaffold42306 SAMTools SNP 99344 99344 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C17%3BMQ%3D20%3BFQ%3D27.4%3BPV4%3D1%2C2.3e-09%2C1%2C1.3e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C55:57 scaffold42306 SAMTools SNP 99345 99345 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C15%3BMQ%3D20%3BFQ%3D29.6%3BPV4%3D1%2C1e-09%2C1%2C2.8e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C58:60 scaffold42306 SAMTools SNP 99353 99353 57 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D20%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C33%2C0:63 scaffold42306 SAMTools SNP 99355 99355 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D20%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold42328 SAMTools SNP 39111 39111 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42328 SAMTools SNP 39195 39195 6.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42328 SAMTools SNP 106124 106124 17.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.00054%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold42348 SAMTools SNP 123102 123102 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C6%3BMQ%3D20%3BFQ%3D8.65%3BPV4%3D1%2C0.0081%2C1%2C4.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C65:36 scaffold42348 SAMTools SNP 123117 123117 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C0.31%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C54:37 scaffold42348 SAMTools SNP 123120 123120 15.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.12%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold42392 SAMTools SNP 103060 103060 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42392 SAMTools SNP 103062 103062 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold424 SAMTools SNP 30123 30123 35.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold42402 SAMTools SNP 54431 54431 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42402 SAMTools SNP 54489 54489 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42402 SAMTools SNP 61183 61183 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42402 SAMTools SNP 61595 61595 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42402 SAMTools SNP 133533 133533 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D20%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C81%2C0:99 scaffold42402 SAMTools SNP 133553 133553 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C13%2C0%3BMQ%3D20%3BFQ%3D13.1%3BPV4%3D1%2C7.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C57:42 scaffold42402 SAMTools SNP 151908 151908 28.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-28%3BPV4%3D1%2C1.5e-05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C1%2C0:4 scaffold42402 SAMTools SNP 151935 151935 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C27%2C0:48 scaffold42402 SAMTools SNP 152031 152031 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42422 SAMTools SNP 20550 20550 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42422 SAMTools SNP 20797 20797 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold42422 SAMTools SNP 28271 28271 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C0.00062%2C1%2C4.2e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C62:47 scaffold42446 SAMTools SNP 9614 9614 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold42448 SAMTools SNP 17706 17706 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42450 SAMTools SNP 26437 26437 6.99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.0084%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold42450 SAMTools SNP 26439 26439 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.0091%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold42466 SAMTools SNP 34508 34508 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42466 SAMTools SNP 34509 34509 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42466 SAMTools SNP 35367 35367 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold425 SAMTools SNP 342913 342913 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold425 SAMTools SNP 787448 787448 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold425 SAMTools SNP 787449 787449 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold425 SAMTools SNP 787511 787511 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.035%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold425 SAMTools SNP 787512 787512 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.053%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold425 SAMTools SNP 925396 925396 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.051%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold425 SAMTools SNP 925431 925431 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold425 SAMTools SNP 1014500 1014500 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D20%3BFQ%3D20.3%3BPV4%3D1%2C5.2e-06%2C1%2C2.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C55:50 scaffold425 SAMTools SNP 1014521 1014521 35.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold425 SAMTools SNP 1014523 1014523 27.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold425 SAMTools SNP 1014970 1014970 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C17%3BMQ%3D20%3BFQ%3D29.5%3BPV4%3D1%2C0.0023%2C1%2C1.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C60:59 scaffold425 SAMTools SNP 1015081 1015081 9.49 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C17%2C8%2C38%2C0%2C35:12 scaffold425 SAMTools SNP 1025994 1025994 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C10%3BMQ%3D20%3BFQ%3D23.8%3BPV4%3D1%2C0.0047%2C1%2C8.8e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C64:54 scaffold425 SAMTools SNP 1025995 1025995 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C9%3BMQ%3D20%3BFQ%3D20%3BPV4%3D1%2C0.045%2C1%2C1.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C64:50 scaffold425 SAMTools SNP 1026020 1026020 29.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D20%3BFQ%3D-28%3BPV4%3D1%2C0.045%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C1%2C0:4 scaffold425 SAMTools SNP 1026022 1026022 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42516 SAMTools SNP 3938 3938 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42516 SAMTools SNP 37776 37776 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C10%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C4e-09%2C1%2C2.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C26:29 scaffold42516 SAMTools SNP 37777 37777 34 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C10%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C0%2C1%2C7.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C26:29 scaffold42516 SAMTools SNP 37819 37819 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42516 SAMTools SNP 37820 37820 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42516 SAMTools SNP 40619 40619 15.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.016%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold42516 SAMTools SNP 40621 40621 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.012%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold42516 SAMTools SNP 40628 40628 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42516 SAMTools SNP 40629 40629 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42518 SAMTools SNP 115626 115626 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42518 SAMTools SNP 122968 122968 17.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold42528 SAMTools SNP 105153 105153 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42528 SAMTools SNP 137877 137877 41.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold42528 SAMTools SNP 137899 137899 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42528 SAMTools SNP 137900 137900 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold42528 SAMTools SNP 148254 148254 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold42528 SAMTools SNP 158982 158982 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42530 SAMTools SNP 28872 28872 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42530 SAMTools SNP 28873 28873 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42556 SAMTools SNP 96349 96349 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42556 SAMTools SNP 97274 97274 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42558 SAMTools SNP 144395 144395 36.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D20%3BFQ%3D-37%3BPV4%3D1%2C0.035%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C10%2C0:17 scaffold42558 SAMTools SNP 156596 156596 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42592 SAMTools SNP 73621 73621 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C9%3BMQ%3D20%3BFQ%3D3.55%3BPV4%3D1%2C5.6e-10%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C28:31 scaffold42662 SAMTools SNP 167145 167145 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42674 SAMTools SNP 40757 40757 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42674 SAMTools SNP 40759 40759 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42684 SAMTools SNP 133094 133094 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0189%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42684 SAMTools SNP 133095 133095 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0189%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold427 SAMTools SNP 44678 44678 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold427 SAMTools SNP 54953 54953 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42754 SAMTools SNP 139754 139754 25.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold42754 SAMTools SNP 152903 152903 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0098%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42760 SAMTools SNP 42333 42333 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42760 SAMTools SNP 42334 42334 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42760 SAMTools SNP 46671 46671 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42766 SAMTools SNP 15504 15504 6.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42766 SAMTools SNP 15602 15602 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D20%3BFQ%3D10.9%3BPV4%3D1%2C0.01%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C38:41 scaffold42766 SAMTools SNP 116880 116880 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0010%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0019%2C1%2C4.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold42788 SAMTools SNP 40823 40823 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42794 SAMTools SNP 158434 158434 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42794 SAMTools SNP 158435 158435 14.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold42836 SAMTools SNP 143695 143695 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.35%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C19:22 scaffold42836 SAMTools SNP 143696 143696 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.19%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C19:22 scaffold42836 SAMTools SNP 143706 143706 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.34%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold42836 SAMTools SNP 161495 161495 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42836 SAMTools SNP 177105 177105 22.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-10.4%3BPV4%3D1%2C1.8e-06%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C17:20 scaffold42836 SAMTools SNP 177118 177118 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0022%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C8.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold42836 SAMTools SNP 177193 177193 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold42836 SAMTools SNP 177775 177775 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42850 SAMTools SNP 178385 178385 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C14%2C0%2C130%3BMQ%3D20%3BFQ%3D-242%3BPV4%3D1%2C3.7e-05%2C1%2C1.5e-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C215%2C0:99 scaffold42850 SAMTools SNP 178387 178387 10.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5101%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C34%3BMQ%3D20%3BFQ%3D-13.2%3BPV4%3D1%2C7.2e-17%2C1%2C2.2e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C14:18 scaffold42850 SAMTools SNP 178415 178415 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.067%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold42850 SAMTools SNP 178922 178922 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C15%3BMQ%3D20%3BFQ%3D14%3BPV4%3D1%2C9.4e-05%2C1%2C2.3e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C55:43 scaffold42850 SAMTools SNP 178934 178934 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C9%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C1.1e-05%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C62:40 scaffold42850 SAMTools SNP 178937 178937 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C9%3BMQ%3D20%3BFQ%3D27.5%3BPV4%3D1%2C0.053%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C57:57 scaffold42850 SAMTools SNP 178940 178940 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C1.2e-05%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C54:37 scaffold42850 SAMTools SNP 178951 178951 15.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.013%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold42850 SAMTools SNP 178952 178952 15.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.011%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold42850 SAMTools SNP 179024 179024 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42850 SAMTools SNP 179964 179964 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42866 SAMTools SNP 59043 59043 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42890 SAMTools SNP 162562 162562 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold42892 SAMTools SNP 13717 13717 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42892 SAMTools SNP 67989 67989 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D16.1%3BPV4%3D1%2C1.1e-06%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C46:46 scaffold42904 SAMTools SNP 59436 59436 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42904 SAMTools SNP 70215 70215 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold42904 SAMTools SNP 72229 72229 35.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C11%2C0%3BMQ%3D20%3BFQ%3D-28%3BPV4%3D1%2C1.4e-05%2C1%2C8e-11;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C1%2C0:4 scaffold42904 SAMTools SNP 72231 72231 44.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D20%3BFQ%3D-43%3BPV4%3D1%2C0.0017%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C16%2C0:29 scaffold42904 SAMTools SNP 72283 72283 21.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0000%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D93%2C0%2C141%2C0%3BMQ%3D20%3BFQ%3D-5.45%3BPV4%3D1%2C1.1e-44%2C1%2C1.2e-158;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C23:26 scaffold42904 SAMTools SNP 72284 72284 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D92%2C0%2C197%2C0%3BMQ%3D20%3BFQ%3D-86%3BPV4%3D1%2C1.9e-55%2C1%2C1.7e-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C59%2C0:84 scaffold42904 SAMTools SNP 95413 95413 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42904 SAMTools SNP 105455 105455 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold42904 SAMTools SNP 116288 116288 12.9 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C5:8 scaffold42918 SAMTools SNP 100466 100466 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D20%3BFQ%3D6.98%3BPV4%3D1%2C6.1e-08%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C60:33 scaffold42974 SAMTools SNP 46598 46598 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43 SAMTools SNP 165740 165740 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43 SAMTools SNP 165742 165742 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43 SAMTools SNP 229338 229338 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.033%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold43 SAMTools SNP 229339 229339 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C0.0044%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C36:39 scaffold43 SAMTools SNP 539203 539203 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C2.1e-09%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C44:46 scaffold43 SAMTools SNP 593509 593509 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold43024 SAMTools SNP 140110 140110 35.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold43024 SAMTools SNP 140136 140136 27.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold43028 SAMTools SNP 26443 26443 7.25 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.0093%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C8:12 scaffold43034 SAMTools SNP 35882 35882 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43034 SAMTools SNP 36071 36071 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0182%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43034 SAMTools SNP 40133 40133 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43034 SAMTools SNP 40455 40455 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold43034 SAMTools SNP 43016 43016 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.067%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold43034 SAMTools SNP 43018 43018 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C0.095%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C52:46 scaffold43034 SAMTools SNP 43019 43019 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D15%3BPV4%3D1%2C0.067%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C57:44 scaffold43034 SAMTools SNP 44284 44284 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43034 SAMTools SNP 44308 44308 22.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold43034 SAMTools SNP 69736 69736 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43034 SAMTools SNP 107510 107510 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.0092%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold43036 SAMTools SNP 24333 24333 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D3.03%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C28:31 scaffold43036 SAMTools SNP 186929 186929 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold43036 SAMTools SNP 186930 186930 27.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold43036 SAMTools SNP 200772 200772 3.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43038 SAMTools SNP 10440 10440 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43038 SAMTools SNP 160562 160562 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43038 SAMTools SNP 160563 160563 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43066 SAMTools SNP 153615 153615 35.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold43066 SAMTools SNP 153616 153616 35.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold43066 SAMTools SNP 153961 153961 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43072 SAMTools SNP 2972 2972 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43072 SAMTools SNP 26034 26034 25.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C18%2C0:32 scaffold43072 SAMTools SNP 38239 38239 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C0.036%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C36:39 scaffold43072 SAMTools SNP 153251 153251 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43074 SAMTools SNP 46444 46444 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43074 SAMTools SNP 46488 46488 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43084 SAMTools SNP 97997 97997 14.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.022%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C5:8 scaffold43084 SAMTools SNP 171512 171512 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold43084 SAMTools SNP 171514 171514 15.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.4%2C1%2C2.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold43116 SAMTools SNP 48776 48776 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43116 SAMTools SNP 48840 48840 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43116 SAMTools SNP 102916 102916 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C0.017%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C54:37 scaffold43116 SAMTools SNP 103067 103067 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43116 SAMTools SNP 103069 103069 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43116 SAMTools SNP 205002 205002 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43122 SAMTools SNP 9031 9031 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43134 SAMTools SNP 85399 85399 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D20%3BFQ%3D9.74%3BPV4%3D1%2C0.00092%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C41:39 scaffold43134 SAMTools SNP 90953 90953 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43134 SAMTools SNP 124369 124369 27.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold43134 SAMTools SNP 124371 124371 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold43170 SAMTools SNP 141815 141815 27.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold43170 SAMTools SNP 141816 141816 27.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold43184 SAMTools SNP 38894 38894 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43184 SAMTools SNP 44459 44459 6.99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold43184 SAMTools SNP 44460 44460 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.31%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold43194 SAMTools SNP 198476 198476 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold432 SAMTools SNP 55472 55472 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold432 SAMTools SNP 341882 341882 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C7%3BMQ%3D20%3BFQ%3D14.2%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C65:43 scaffold432 SAMTools SNP 342098 342098 35.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C12%3BMQ%3D20%3BFQ%3D-31%3BPV4%3D1%2C8.4e-06%2C1%2C4.6e-20;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C4%2C0:7 scaffold432 SAMTools SNP 342102 342102 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold432 SAMTools SNP 342138 342138 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold432 SAMTools SNP 416663 416663 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold432 SAMTools SNP 416665 416665 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold432 SAMTools SNP 416689 416689 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D4.11%3BPV4%3D1%2C0.0012%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C29:32 scaffold432 SAMTools SNP 432737 432737 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C30%2C0:57 scaffold43206 SAMTools SNP 4217 4217 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43240 SAMTools SNP 92352 92352 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43240 SAMTools SNP 92353 92353 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43240 SAMTools SNP 108864 108864 12.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0008%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold43240 SAMTools SNP 181997 181997 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0236%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43240 SAMTools SNP 181998 181998 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0254%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43244 SAMTools SNP 201376 201376 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43244 SAMTools SNP 201377 201377 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43258 SAMTools SNP 215355 215355 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D-6.18%3BPV4%3D1%2C0.17%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C22:25 scaffold43278 SAMTools SNP 91551 91551 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C7.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold43278 SAMTools SNP 91556 91556 6.99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold43290 SAMTools SNP 235893 235893 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C12%3BMQ%3D20%3BFQ%3D30%3BPV4%3D1%2C0.015%2C1%2C3.2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C60:60 scaffold43290 SAMTools SNP 235894 235894 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C8%3BMQ%3D20%3BFQ%3D20.9%3BPV4%3D1%2C0.13%2C1%2C4.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C64:51 scaffold43290 SAMTools SNP 235906 235906 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.082%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold43290 SAMTools SNP 235962 235962 6.99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.08%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold43296 SAMTools SNP 73576 73576 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43296 SAMTools SNP 131917 131917 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold433 SAMTools SNP 36126 36126 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold433 SAMTools SNP 36172 36172 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0140%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D20%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold433 SAMTools SNP 36633 36633 35.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0365%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold433 SAMTools SNP 36744 36744 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold433 SAMTools SNP 209360 209360 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold433 SAMTools SNP 209361 209361 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold433 SAMTools SNP 315761 315761 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold433 SAMTools SNP 351256 351256 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold433 SAMTools SNP 445182 445182 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D5%2C0%2C12%2C0%3BMQ%3D20%3BFQ%3D4.13%3BPV4%3D1%2C1.4e-13%2C1%2C1.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C29:32 scaffold433 SAMTools SNP 529414 529414 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold433 SAMTools SNP 825814 825814 15.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.04%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold433 SAMTools SNP 825816 825816 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.027%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold433 SAMTools SNP 830089 830089 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold433 SAMTools SNP 831083 831083 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold433 SAMTools SNP 831085 831085 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold433 SAMTools SNP 1012324 1012324 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C7%3BMQ%3D20%3BFQ%3D7.8%3BPV4%3D1%2C0.092%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C63:34 scaffold433 SAMTools SNP 1012325 1012325 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C8%3BMQ%3D20%3BFQ%3D15.1%3BPV4%3D1%2C0.21%2C1%2C3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C64:44 scaffold433 SAMTools SNP 1012337 1012337 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold433 SAMTools SNP 1012342 1012342 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C0.017%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C26:29 scaffold433 SAMTools SNP 1012343 1012343 22.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D20%3BFQ%3D-10.4%3BPV4%3D1%2C8.1e-05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C17:20 scaffold433 SAMTools SNP 1280755 1280755 27.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0007%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold43314 SAMTools SNP 201599 201599 4.75 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold43314 SAMTools SNP 201668 201668 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43314 SAMTools SNP 201684 201684 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0010%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.12%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold43314 SAMTools SNP 201688 201688 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0019%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold43314 SAMTools SNP 202743 202743 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43340 SAMTools SNP 174052 174052 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D20%3BFQ%3D4.11%3BPV4%3D1%2C0.068%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C29:32 scaffold43358 SAMTools SNP 68686 68686 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43358 SAMTools SNP 68688 68688 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43358 SAMTools SNP 84515 84515 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0010%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.008%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold43366 SAMTools SNP 50606 50606 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43396 SAMTools SNP 139529 139529 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43426 SAMTools SNP 58263 58263 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C14%2C0%2C86%3BMQ%3D20%3BFQ%3D-125%3BPV4%3D1%2C9.9e-09%2C1%2C4.8e-44;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C98%2C0:81 scaffold43426 SAMTools SNP 58265 58265 4.76 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C16%2C0%2C68%3BMQ%3D20%3BFQ%3D-69%3BPV4%3D1%2C1.4e-06%2C1%2C8.1e-24;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C42%2C0:39 scaffold43426 SAMTools SNP 58275 58275 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D20%3BFQ%3D20.3%3BPV4%3D1%2C9.7e-05%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C55:50 scaffold43426 SAMTools SNP 58276 58276 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D20%3BFQ%3D20.3%3BPV4%3D1%2C3.3e-05%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C48:50 scaffold43426 SAMTools SNP 58278 58278 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C7e-05%2C1%2C2.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold43426 SAMTools SNP 58279 58279 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C1.1e-05%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold43442 SAMTools SNP 108810 108810 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43442 SAMTools SNP 108811 108811 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43446 SAMTools SNP 185861 185861 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43452 SAMTools SNP 86993 86993 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43500 SAMTools SNP 125398 125398 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0182%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43500 SAMTools SNP 199248 199248 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43526 SAMTools SNP 56610 56610 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43526 SAMTools SNP 189080 189080 39.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold43536 SAMTools SNP 38240 38240 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43536 SAMTools SNP 186960 186960 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43536 SAMTools SNP 186961 186961 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43536 SAMTools SNP 186990 186990 15.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.0014%2C1%2C1.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold43536 SAMTools SNP 186991 186991 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.027%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold43536 SAMTools SNP 186993 186993 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C0.0035%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C52:46 scaffold43536 SAMTools SNP 186994 186994 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C0.0045%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C52:46 scaffold43562 SAMTools SNP 57981 57981 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0098%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43562 SAMTools SNP 203797 203797 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43562 SAMTools SNP 203798 203798 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43574 SAMTools SNP 2883 2883 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43574 SAMTools SNP 103536 103536 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.013%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold43574 SAMTools SNP 103538 103538 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.062%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold43574 SAMTools SNP 103540 103540 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D6.19%3BPV4%3D1%2C0.009%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C56:31 scaffold43574 SAMTools SNP 109621 109621 24.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold43574 SAMTools SNP 180113 180113 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43574 SAMTools SNP 199813 199813 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.00042%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold43574 SAMTools SNP 244559 244559 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43574 SAMTools SNP 245368 245368 17.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.35%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold43576 SAMTools SNP 52100 52100 17.7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.00098%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold43598 SAMTools SNP 129361 129361 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43608 SAMTools SNP 34804 34804 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43616 SAMTools SNP 156157 156157 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43624 SAMTools SNP 148864 148864 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43624 SAMTools SNP 215096 215096 33.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D20%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C4%2C0:7 scaffold43630 SAMTools SNP 32047 32047 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43630 SAMTools SNP 96433 96433 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D10.9%3BPV4%3D1%2C6.2e-08%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C38:41 scaffold43630 SAMTools SNP 249069 249069 6.99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold43630 SAMTools SNP 249070 249070 35.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold43630 SAMTools SNP 249072 249072 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43648 SAMTools SNP 33652 33652 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43664 SAMTools SNP 88662 88662 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43664 SAMTools SNP 94406 94406 35.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold43686 SAMTools SNP 65368 65368 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold43692 SAMTools SNP 216876 216876 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43692 SAMTools SNP 263970 263970 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43708 SAMTools SNP 13405 13405 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43708 SAMTools SNP 13407 13407 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43708 SAMTools SNP 13804 13804 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C45%2C0%2C32%3BMQ%3D20%3BFQ%3D14.5%3BPV4%3D1%2C6.1e-16%2C1%2C4.5e-22;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C50:44 scaffold43708 SAMTools SNP 13823 13823 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C12%3BMQ%3D20%3BFQ%3D27.4%3BPV4%3D1%2C0.034%2C1%2C9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C63:57 scaffold43708 SAMTools SNP 13832 13832 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C6%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C0.12%2C1%2C4.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C62:47 scaffold43708 SAMTools SNP 17671 17671 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43708 SAMTools SNP 21891 21891 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43708 SAMTools SNP 241797 241797 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43742 SAMTools SNP 191819 191819 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43742 SAMTools SNP 191820 191820 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43794 SAMTools SNP 94358 94358 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43794 SAMTools SNP 94360 94360 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43804 SAMTools SNP 170921 170921 16.6 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold43804 SAMTools SNP 181355 181355 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D-9.5%3BPV4%3D1%2C0.16%2C1%2C1.8e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C18:21 scaffold43804 SAMTools SNP 181356 181356 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D-9.5%3BPV4%3D1%2C0.42%2C1%2C2.7e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C18:21 scaffold43804 SAMTools SNP 186471 186471 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43818 SAMTools SNP 11135 11135 14.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0060%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold43818 SAMTools SNP 11184 11184 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43818 SAMTools SNP 23322 23322 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43818 SAMTools SNP 314205 314205 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43842 SAMTools SNP 75936 75936 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43842 SAMTools SNP 317835 317835 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43842 SAMTools SNP 317878 317878 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43844 SAMTools SNP 127203 127203 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43844 SAMTools SNP 127205 127205 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43844 SAMTools SNP 182459 182459 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43868 SAMTools SNP 118631 118631 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43868 SAMTools SNP 118632 118632 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43868 SAMTools SNP 121266 121266 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43868 SAMTools SNP 121329 121329 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43868 SAMTools SNP 197549 197549 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43868 SAMTools SNP 197551 197551 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43868 SAMTools SNP 253234 253234 3.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43868 SAMTools SNP 333521 333521 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43894 SAMTools SNP 5481 5481 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43932 SAMTools SNP 83382 83382 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43932 SAMTools SNP 83383 83383 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43932 SAMTools SNP 104730 104730 5.47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D18%3BFQ%3D-6.39%3BPV4%3D1%2C0.16%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C22:27 scaffold43932 SAMTools SNP 104731 104731 25.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D19%3BFQ%3D-12.3%3BPV4%3D1%2C0.0074%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C15:18 scaffold43932 SAMTools SNP 105063 105063 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0010%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.26%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold43932 SAMTools SNP 105065 105065 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.085%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C31:34 scaffold43932 SAMTools SNP 220417 220417 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C0.027%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C44:46 scaffold43932 SAMTools SNP 220418 220418 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C0.21%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C26:29 scaffold43940 SAMTools SNP 18680 18680 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.48%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold43940 SAMTools SNP 18681 18681 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C32%2C0%3BMQ%3D20%3BFQ%3D-90%3BPV4%3D1%2C0.19%2C1%2C6.8e-15;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C63%2C0:99 scaffold43940 SAMTools SNP 18683 18683 12.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C32%2C0%3BMQ%3D20%3BFQ%3D-42%3BPV4%3D1%2C0.11%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold43940 SAMTools SNP 18865 18865 27.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold43940 SAMTools SNP 18866 18866 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D13%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C27%2C0:45 scaffold43940 SAMTools SNP 18914 18914 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D634%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D313%2C0%2C309%2C0%3BMQ%3D20%3BFQ%3D13.1%3BPV4%3D1%2C8.2e-32%2C1%2C7.9e-205;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C55:42 scaffold43940 SAMTools SNP 18916 18916 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D748%3BVDB%3D0.0000%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D312%2C0%2C426%2C0%3BMQ%3D20%3BFQ%3D-7.78%3BPV4%3D1%2C1.4e-43%2C1%2C3.3e-288;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C20:23 scaffold43940 SAMTools SNP 119346 119346 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43940 SAMTools SNP 123907 123907 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43954 SAMTools SNP 150074 150074 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43954 SAMTools SNP 150076 150076 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43954 SAMTools SNP 157424 157424 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43954 SAMTools SNP 157426 157426 29.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C1%2C0:4 scaffold43954 SAMTools SNP 157427 157427 22.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-10.4%3BPV4%3D1%2C0.035%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C17:20 scaffold43954 SAMTools SNP 157741 157741 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D18%3BPV4%3D1%2C1.9e-09%2C1%2C1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C64:48 scaffold43954 SAMTools SNP 157742 157742 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D18%3BPV4%3D1%2C3.2e-09%2C1%2C4.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C64:48 scaffold43954 SAMTools SNP 160102 160102 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.069%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold43954 SAMTools SNP 168883 168883 28 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.0087%2C1%2C8.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C38:41 scaffold43954 SAMTools SNP 168884 168884 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D7.8%3BPV4%3D1%2C0.00064%2C1%2C5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C34:37 scaffold43954 SAMTools SNP 168887 168887 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D8.65%3BPV4%3D1%2C0.067%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C64:36 scaffold43954 SAMTools SNP 168888 168888 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D15%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D4.77%3BPV4%3D1%2C0.17%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C63:28 scaffold43954 SAMTools SNP 168903 168903 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C24%2C0%3BMQ%3D20%3BFQ%3D19.3%3BPV4%3D1%2C0.15%2C1%2C2.4e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C54:49 scaffold43956 SAMTools SNP 20671 20671 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C17%3BMQ%3D20%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C42:45 scaffold43956 SAMTools SNP 20672 20672 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C25%3BMQ%3D20%3BFQ%3D-58%3BPV4%3D1%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C31%2C0:57 scaffold43956 SAMTools SNP 20674 20674 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C8%3BMQ%3D20%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C18:21 scaffold43964 SAMTools SNP 283765 283765 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43964 SAMTools SNP 283766 283766 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43964 SAMTools SNP 359646 359646 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0053%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D20%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold43964 SAMTools SNP 359719 359719 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D20%3BFQ%3D-5.45%3BPV4%3D1%2C0.033%2C1%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C23:26 scaffold43988 SAMTools SNP 323584 323584 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0107%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43988 SAMTools SNP 323599 323599 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold44 SAMTools SNP 16996 16996 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold44 SAMTools SNP 16997 16997 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold44 SAMTools SNP 83510 83510 3.41 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C13%2C7%2C31%2C0%2C28:4 scaffold44 SAMTools SNP 84245 84245 27.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold44 SAMTools SNP 96190 96190 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold44 SAMTools SNP 121369 121369 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold44 SAMTools SNP 126560 126560 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D9.29%3BPV4%3D1%2C0.094%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C48:37 scaffold44 SAMTools SNP 126561 126561 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.055%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold44 SAMTools SNP 360063 360063 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold44 SAMTools SNP 438423 438423 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold44 SAMTools SNP 442293 442293 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.037%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold44 SAMTools SNP 442296 442296 35.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold44006 SAMTools SNP 103506 103506 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold44006 SAMTools SNP 103508 103508 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold44006 SAMTools SNP 112265 112265 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0010%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold44006 SAMTools SNP 112267 112267 6.99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.0013%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold44006 SAMTools SNP 119375 119375 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold44006 SAMTools SNP 119404 119404 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold44006 SAMTools SNP 245096 245096 27.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold44064 SAMTools SNP 62231 62231 24.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold44064 SAMTools SNP 264303 264303 27.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold44064 SAMTools SNP 264304 264304 27.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold44064 SAMTools SNP 450732 450732 15.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.06%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold44064 SAMTools SNP 450733 450733 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.041%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold44064 SAMTools SNP 450744 450744 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D20%3BPV4%3D1%2C0.044%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C50:50 scaffold443 SAMTools SNP 247775 247775 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold443 SAMTools SNP 249506 249506 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold443 SAMTools SNP 249508 249508 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold443 SAMTools SNP 512527 512527 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold445 SAMTools SNP 156307 156307 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold445 SAMTools SNP 156327 156327 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold445 SAMTools SNP 295885 295885 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold445 SAMTools SNP 415404 415404 6.99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.21%2C1%2C6.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold445 SAMTools SNP 415546 415546 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold447 SAMTools SNP 174927 174927 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold448 SAMTools SNP 99778 99778 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold449 SAMTools SNP 177577 177577 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C7%3BMQ%3D20%3BFQ%3D15.1%3BPV4%3D1%2C4.4e-08%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C64:44 scaffold450 SAMTools SNP 113501 113501 12.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold452 SAMTools SNP 147395 147395 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C3.2e-05%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C38:41 scaffold453 SAMTools SNP 243491 243491 5.47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D18%3BFQ%3D-6.39%3BPV4%3D1%2C0.0057%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C22:27 scaffold453 SAMTools SNP 245979 245979 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D18%2C0%2C35%2C0%3BMQ%3D20%3BFQ%3D9.38%3BPV4%3D1%2C2e-09%2C1%2C8e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C36:39 scaffold453 SAMTools SNP 245980 245980 3.69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5334%3BAC1%3D1%3BDP4%3D18%2C0%2C49%2C0%3BMQ%3D20%3BFQ%3D-18.1%3BPV4%3D1%2C6.1e-12%2C1%2C1.3e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C9:16 scaffold454 SAMTools SNP 277446 277446 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C44%2C0%2C52%3BMQ%3D20%3BFQ%3D16.1%3BPV4%3D1%2C2.8e-07%2C1%2C1.9e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C44:46 scaffold454 SAMTools SNP 277495 277495 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C10%3BMQ%3D19%3BFQ%3D25.3%3BPV4%3D1%2C0.0039%2C1%2C3.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C54:55 scaffold454 SAMTools SNP 277496 277496 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C10%3BMQ%3D19%3BFQ%3D19.8%3BPV4%3D1%2C0.014%2C1%2C5.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C47:50 scaffold454 SAMTools SNP 278129 278129 15.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0143%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold454 SAMTools SNP 278130 278130 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.3%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold454 SAMTools SNP 283668 283668 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold457 SAMTools SNP 339675 339675 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold459 SAMTools SNP 24124 24124 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold459 SAMTools SNP 24125 24125 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold459 SAMTools SNP 314256 314256 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold461 SAMTools SNP 590888 590888 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold463 SAMTools SNP 46299 46299 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D8.6%3BPV4%3D1%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C35:38 scaffold467 SAMTools SNP 57422 57422 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold469 SAMTools SNP 364126 364126 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold469 SAMTools SNP 364138 364138 15.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.36%2C1%2C7.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold469 SAMTools SNP 412384 412384 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C0.00046%2C1%2C1.3e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C54:37 scaffold469 SAMTools SNP 412385 412385 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D20%3BFQ%3D9.45%3BPV4%3D1%2C0.19%2C1%2C9.2e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C53:37 scaffold469 SAMTools SNP 617827 617827 3.18 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0010%3BAF1%3D0.5428%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19.1%3BPV4%3D1%2C0.0081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C8:15 scaffold469 SAMTools SNP 748990 748990 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold469 SAMTools SNP 748991 748991 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold471 SAMTools SNP 123009 123009 8.93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold471 SAMTools SNP 123010 123010 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold471 SAMTools SNP 123050 123050 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.0017%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold471 SAMTools SNP 961614 961614 24.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold472 SAMTools SNP 218430 218430 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold472 SAMTools SNP 218431 218431 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold472 SAMTools SNP 351566 351566 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold472 SAMTools SNP 351628 351628 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.00021%2C1%2C2.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold479 SAMTools SNP 153642 153642 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold48 SAMTools SNP 850443 850443 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold481 SAMTools SNP 105712 105712 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.19%2C1%2C4.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C38:41 scaffold481 SAMTools SNP 105713 105713 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.00096%2C1%2C5.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold481 SAMTools SNP 105718 105718 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold481 SAMTools SNP 431233 431233 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold481 SAMTools SNP 431235 431235 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold481 SAMTools SNP 1067187 1067187 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0008%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.00063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold481 SAMTools SNP 1099271 1099271 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold481 SAMTools SNP 1099336 1099336 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold485 SAMTools SNP 48567 48567 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C2.4e-05%2C1%2C4.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C54:37 scaffold485 SAMTools SNP 179505 179505 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold485 SAMTools SNP 179567 179567 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold485 SAMTools SNP 306521 306521 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold485 SAMTools SNP 342327 342327 8.93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0204%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold485 SAMTools SNP 480253 480253 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold485 SAMTools SNP 480254 480254 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold485 SAMTools SNP 583385 583385 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold485 SAMTools SNP 773310 773310 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0011%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold487 SAMTools SNP 139151 139151 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold487 SAMTools SNP 139152 139152 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold487 SAMTools SNP 139185 139185 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.31%2C1%2C6.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold487 SAMTools SNP 227047 227047 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold488 SAMTools SNP 23543 23543 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold488 SAMTools SNP 23544 23544 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold488 SAMTools SNP 104280 104280 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold489 SAMTools SNP 285643 285643 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold489 SAMTools SNP 301921 301921 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold489 SAMTools SNP 322914 322914 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold489 SAMTools SNP 349484 349484 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold49 SAMTools SNP 138495 138495 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold49 SAMTools SNP 138535 138535 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold492 SAMTools SNP 197042 197042 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold492 SAMTools SNP 200362 200362 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold492 SAMTools SNP 210755 210755 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.1%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C40:30 scaffold492 SAMTools SNP 210786 210786 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D6.2%3BPV4%3D1%2C0.084%2C1%2C8.5e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C65:31 scaffold492 SAMTools SNP 279409 279409 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.015%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold492 SAMTools SNP 575461 575461 15.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold492 SAMTools SNP 578610 578610 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.00019%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold492 SAMTools SNP 600972 600972 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold492 SAMTools SNP 600973 600973 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold492 SAMTools SNP 601012 601012 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0010%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0013%2C1%2C1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold493 SAMTools SNP 56733 56733 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold493 SAMTools SNP 56734 56734 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold493 SAMTools SNP 124861 124861 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.023%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold496 SAMTools SNP 78447 78447 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold496 SAMTools SNP 475499 475499 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold496 SAMTools SNP 475500 475500 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold496 SAMTools SNP 477127 477127 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold496 SAMTools SNP 477783 477783 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold498 SAMTools SNP 39758 39758 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D20%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C45%2C0:87 scaffold498 SAMTools SNP 209997 209997 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold498 SAMTools SNP 210054 210054 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold500 SAMTools SNP 28469 28469 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold500 SAMTools SNP 37304 37304 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold500 SAMTools SNP 37305 37305 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold500 SAMTools SNP 119402 119402 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.036%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold500 SAMTools SNP 119410 119410 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D16.1%3BPV4%3D1%2C0.00072%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C46:46 scaffold500 SAMTools SNP 119412 119412 30.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D5%2C0%2C17%2C0%3BMQ%3D20%3BFQ%3D-11.3%3BPV4%3D1%2C0.00017%2C1%2C1.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C16:19 scaffold500 SAMTools SNP 119421 119421 9.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0001%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D15%2C0%2C40%2C0%3BMQ%3D20%3BFQ%3D-9.53%3BPV4%3D1%2C5.7e-05%2C1%2C4.6e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C18:22 scaffold500 SAMTools SNP 119423 119423 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D26%2C0%2C44%2C0%3BMQ%3D20%3BFQ%3D9.29%3BPV4%3D1%2C1%2C1%2C7.6e-22;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C36:39 scaffold500 SAMTools SNP 119752 119752 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.00052%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold500 SAMTools SNP 119962 119962 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0010%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0054%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold500 SAMTools SNP 119964 119964 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D15%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C44:45 scaffold500 SAMTools SNP 120390 120390 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D18.9%3BPV4%3D1%2C0.01%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C59:49 scaffold500 SAMTools SNP 124310 124310 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.036%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold500 SAMTools SNP 124311 124311 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D15%3BPV4%3D1%2C0.033%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C42:45 scaffold500 SAMTools SNP 124313 124313 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C0.09%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C63:39 scaffold500 SAMTools SNP 124572 124572 22 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D13%3BPV4%3D1%2C0.41%2C1%2C9.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C40:43 scaffold500 SAMTools SNP 124892 124892 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.00095%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold500 SAMTools SNP 124902 124902 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.017%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold500 SAMTools SNP 124927 124927 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D8.65%3BPV4%3D1%2C5.6e-05%2C1%2C1.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C65:36 scaffold500 SAMTools SNP 124928 124928 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D8.65%3BPV4%3D1%2C0.0062%2C1%2C2.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C65:36 scaffold500 SAMTools SNP 126590 126590 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.0055%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C57:40 scaffold501 SAMTools SNP 169701 169701 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold501 SAMTools SNP 300824 300824 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold501 SAMTools SNP 307230 307230 17.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.0074%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold501 SAMTools SNP 307231 307231 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.021%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold501 SAMTools SNP 307382 307382 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold501 SAMTools SNP 308070 308070 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C0.13%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C26:29 scaffold501 SAMTools SNP 308071 308071 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C0.069%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C26:29 scaffold501 SAMTools SNP 308834 308834 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.18%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold501 SAMTools SNP 308835 308835 17.7 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold501 SAMTools SNP 309208 309208 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold501 SAMTools SNP 309684 309684 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C60:41 scaffold501 SAMTools SNP 310726 310726 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.23%3BPV4%3D1%2C0.47%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C42:30 scaffold501 SAMTools SNP 1068627 1068627 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold501 SAMTools SNP 1072665 1072665 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0059%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D7.77%3BPV4%3D1%2C1.9e-05%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C54:34 scaffold501 SAMTools SNP 1153556 1153556 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold501 SAMTools SNP 1153558 1153558 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold501 SAMTools SNP 1368235 1368235 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold501 SAMTools SNP 1368236 1368236 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold501 SAMTools SNP 1369920 1369920 3.41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold502 SAMTools SNP 644587 644587 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.092%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold502 SAMTools SNP 644589 644589 8.93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.16%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold502 SAMTools SNP 689566 689566 29.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D4%2C0%2C13%2C0%3BMQ%3D19%3BFQ%3D-10.4%3BPV4%3D1%2C0.0012%2C0.22%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C17:20 scaffold502 SAMTools SNP 689567 689567 26.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D4%2C0%2C14%2C0%3BMQ%3D18%3BFQ%3D-12.3%3BPV4%3D1%2C1.4e-05%2C0.17%2C3.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C15:18 scaffold504 SAMTools SNP 268496 268496 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold504 SAMTools SNP 268502 268502 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold506 SAMTools SNP 311616 311616 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold506 SAMTools SNP 325589 325589 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D20%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C48%2C0:88 scaffold506 SAMTools SNP 326186 326186 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold506 SAMTools SNP 326187 326187 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold506 SAMTools SNP 328948 328948 15.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C21%3BMQ%3D18%3BFQ%3D-21%3BPV4%3D1%2C6.1e-05%2C0.093%2C2.7e-29;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C6:9 scaffold506 SAMTools SNP 328949 328949 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C15%3BMQ%3D17%3BFQ%3D-6.19%3BPV4%3D1%2C0.00044%2C0.05%2C5.8e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C22:25 scaffold506 SAMTools SNP 329541 329541 17.7 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.00077%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold506 SAMTools SNP 329543 329543 8.93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.021%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold507 SAMTools SNP 224312 224312 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold507 SAMTools SNP 390262 390262 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.015%2C1%2C7.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold507 SAMTools SNP 390263 390263 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.013%2C1%2C4.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold508 SAMTools SNP 255533 255533 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D20%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C66%2C0:99 scaffold509 SAMTools SNP 152415 152415 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.13%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold509 SAMTools SNP 152416 152416 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.013%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold509 SAMTools SNP 156058 156058 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold509 SAMTools SNP 167278 167278 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold509 SAMTools SNP 355399 355399 24.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.11%2C1%2C4.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold509 SAMTools SNP 355401 355401 15.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.01%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold509 SAMTools SNP 355432 355432 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C0.00019%2C1%2C2.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C64:39 scaffold509 SAMTools SNP 355434 355434 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D17.1%3BPV4%3D1%2C0.22%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C65:47 scaffold513 SAMTools SNP 183390 183390 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold513 SAMTools SNP 183391 183391 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold513 SAMTools SNP 234085 234085 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold513 SAMTools SNP 398188 398188 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold513 SAMTools SNP 399131 399131 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold513 SAMTools SNP 402051 402051 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.0099%2C1%2C5.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold513 SAMTools SNP 402081 402081 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold513 SAMTools SNP 402083 402083 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold513 SAMTools SNP 413590 413590 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold514 SAMTools SNP 155394 155394 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold514 SAMTools SNP 174613 174613 27.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold514 SAMTools SNP 419361 419361 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold514 SAMTools SNP 492596 492596 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C168%2C0%2C143%3BMQ%3D20%3BFQ%3D23.8%3BPV4%3D1%2C2.2e-46%2C1%2C9.8e-85;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C63:54 scaffold514 SAMTools SNP 492607 492607 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C65%2C0%2C91%3BMQ%3D20%3BFQ%3D6.9%3BPV4%3D1%2C1e-25%2C1%2C2.4e-50;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C33:36 scaffold514 SAMTools SNP 492608 492608 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C65%2C0%2C89%3BMQ%3D20%3BFQ%3D9.34%3BPV4%3D1%2C2.7e-15%2C1%2C1.4e-47;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C36:39 scaffold514 SAMTools SNP 492620 492620 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C26%3BMQ%3D20%3BFQ%3D25.5%3BPV4%3D1%2C2e-10%2C1%2C7.3e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C56:55 scaffold514 SAMTools SNP 492621 492621 23 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C23%3BMQ%3D20%3BFQ%3D24.6%3BPV4%3D1%2C1e-08%2C1%2C1.3e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C57:55 scaffold514 SAMTools SNP 492637 492637 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C12%3BMQ%3D20%3BFQ%3D29.3%3BPV4%3D1%2C8e-07%2C1%2C3.8e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C58:59 scaffold514 SAMTools SNP 492651 492651 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.11%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold514 SAMTools SNP 492653 492653 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0010%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.00061%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold514 SAMTools SNP 492655 492655 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.019%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold514 SAMTools SNP 494940 494940 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C16%3BMQ%3D20%3BFQ%3D22.5%3BPV4%3D1%2C0.0015%2C1%2C5.2e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C59:52 scaffold514 SAMTools SNP 494953 494953 54 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D20%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C57%2C0%2C77%2C24%2C71:99 scaffold514 SAMTools SNP 494956 494956 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C16%3BMQ%3D20%3BFQ%3D-61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C34%2C0:65 scaffold514 SAMTools SNP 539189 539189 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold521 SAMTools SNP 37015 37015 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold521 SAMTools SNP 37078 37078 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold522 SAMTools SNP 631282 631282 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold527 SAMTools SNP 55301 55301 8.93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.07%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold527 SAMTools SNP 55302 55302 8.93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.092%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold527 SAMTools SNP 55304 55304 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.34%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold527 SAMTools SNP 55305 55305 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold527 SAMTools SNP 55315 55315 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C0.041%2C1%2C3.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C62:47 scaffold527 SAMTools SNP 55316 55316 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D22.6%3BPV4%3D1%2C0.00013%2C1%2C7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C60:53 scaffold527 SAMTools SNP 173372 173372 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C63:40 scaffold527 SAMTools SNP 173396 173396 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C65:39 scaffold527 SAMTools SNP 410948 410948 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold53 SAMTools SNP 24231 24231 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold53 SAMTools SNP 24232 24232 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold53 SAMTools SNP 199181 199181 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold53 SAMTools SNP 199186 199186 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0041%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold53 SAMTools SNP 199190 199190 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.062%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold53 SAMTools SNP 199229 199229 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C12%2C0%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C3.8e-09%2C1%2C1.4e-26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C56:40 scaffold53 SAMTools SNP 199231 199231 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C29%2C0%3BMQ%3D20%3BFQ%3D24.3%3BPV4%3D1%2C0.00029%2C1%2C3e-42;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C53:54 scaffold53 SAMTools SNP 200669 200669 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold53 SAMTools SNP 710905 710905 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold53 SAMTools SNP 711574 711574 5.47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D18%3BFQ%3D-6.39%3BPV4%3D1%2C0%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C22:27 scaffold53 SAMTools SNP 711587 711587 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold53 SAMTools SNP 719288 719288 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold53 SAMTools SNP 733887 733887 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.077%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold53 SAMTools SNP 733888 733888 6.99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.074%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold532 SAMTools SNP 115116 115116 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D20%3BFQ%3D10.1%3BPV4%3D1%2C4.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C48:38 scaffold535 SAMTools SNP 83621 83621 3.41 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C13%2C7%2C31%2C0%2C28:4 scaffold535 SAMTools SNP 501918 501918 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold535 SAMTools SNP 501919 501919 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold54 SAMTools SNP 239465 239465 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold54 SAMTools SNP 239951 239951 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold541 SAMTools SNP 6714 6714 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold541 SAMTools SNP 6715 6715 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold542 SAMTools SNP 77649 77649 6.21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.34%3BPV4%3D1%2C0.0039%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C22:27 scaffold542 SAMTools SNP 271491 271491 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold544 SAMTools SNP 367310 367310 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0197%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold544 SAMTools SNP 399176 399176 8.93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.44%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold544 SAMTools SNP 399619 399619 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5019%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-7.07%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C21:25 scaffold544 SAMTools SNP 420166 420166 17.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.00049%2C1%2C9.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold544 SAMTools SNP 420167 420167 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.022%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold544 SAMTools SNP 420177 420177 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C2e-05%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C54:37 scaffold544 SAMTools SNP 420179 420179 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C3.2e-05%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C54:37 scaffold544 SAMTools SNP 420418 420418 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.39%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold544 SAMTools SNP 420420 420420 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.004%2C1%2C5.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C38:41 scaffold544 SAMTools SNP 453113 453113 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold544 SAMTools SNP 512814 512814 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold547 SAMTools SNP 354328 354328 16.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C2.7e-05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C5:8 scaffold547 SAMTools SNP 356196 356196 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C7.9e-05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold547 SAMTools SNP 372492 372492 22.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D20%3BFQ%3D-10.4%3BPV4%3D1%2C0.0069%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C17:20 scaffold547 SAMTools SNP 378987 378987 8.93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.048%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold549 SAMTools SNP 19317 19317 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold550 SAMTools SNP 10650 10650 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold552 SAMTools SNP 189106 189106 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C21%3BMQ%3D20%3BFQ%3D21.3%3BPV4%3D1%2C0.025%2C1%2C2.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C56:51 scaffold552 SAMTools SNP 189107 189107 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C16%3BMQ%3D20%3BFQ%3D15.9%3BPV4%3D1%2C0.001%2C1%2C3.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C56:45 scaffold552 SAMTools SNP 189109 189109 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C19%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.00051%2C1%2C1.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C38:41 scaffold552 SAMTools SNP 189110 189110 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C19%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.003%2C1%2C1.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C38:41 scaffold552 SAMTools SNP 189118 189118 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.027%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold552 SAMTools SNP 189119 189119 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D20%3BFQ%3D9.74%3BPV4%3D1%2C0.087%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C41:39 scaffold552 SAMTools SNP 189125 189125 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.26%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold556 SAMTools SNP 224007 224007 46.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D20%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold556 SAMTools SNP 224070 224070 13.6 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D20%3BFQ%3D-40;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C43%2C30%2C49%2C0%2C40:20 scaffold556 SAMTools SNP 289924 289924 15.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.011%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold556 SAMTools SNP 296026 296026 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold556 SAMTools SNP 296028 296028 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold556 SAMTools SNP 337572 337572 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.055%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold556 SAMTools SNP 385806 385806 7.19 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.5335%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D18%3BFQ%3D-18.1%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C9:13 scaffold556 SAMTools SNP 394007 394007 5.29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold556 SAMTools SNP 400840 400840 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D20%3BFQ%3D11%3BPV4%3D1%2C0.005%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C48:40 scaffold556 SAMTools SNP 400842 400842 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D4.13%3BPV4%3D1%2C0.071%2C1%2C7.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C32:31 scaffold556 SAMTools SNP 400844 400844 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold556 SAMTools SNP 400845 400845 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold556 SAMTools SNP 409414 409414 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold556 SAMTools SNP 409416 409416 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold556 SAMTools SNP 417453 417453 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold556 SAMTools SNP 419711 419711 41.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold556 SAMTools SNP 419712 419712 41.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold557 SAMTools SNP 44323 44323 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold557 SAMTools SNP 44414 44414 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold557 SAMTools SNP 273544 273544 17.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.0011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold557 SAMTools SNP 273566 273566 6.99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0010%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold557 SAMTools SNP 286873 286873 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold560 SAMTools SNP 125836 125836 35.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold562 SAMTools SNP 78428 78428 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold562 SAMTools SNP 408985 408985 24.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold563 SAMTools SNP 215907 215907 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold563 SAMTools SNP 345385 345385 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold564 SAMTools SNP 300203 300203 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.26%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold564 SAMTools SNP 300413 300413 41.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0053%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold564 SAMTools SNP 300417 300417 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D15%3BPV4%3D1%2C1.1e-08%2C1%2C6.6e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C42:45 scaffold564 SAMTools SNP 300488 300488 29.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-28%3BPV4%3D1%2C4.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C1%2C0:4 scaffold564 SAMTools SNP 313694 313694 6.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5553%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-20%3BPV4%3D1%2C0.0048%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C7:12 scaffold564 SAMTools SNP 313696 313696 17.7 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.041%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold564 SAMTools SNP 320922 320922 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.18%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold564 SAMTools SNP 416349 416349 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D20%3BFQ%3D4.76%3BPV4%3D1%2C3.4e-06%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C54:28 scaffold569 SAMTools SNP 17279 17279 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold569 SAMTools SNP 18139 18139 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.058%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold569 SAMTools SNP 89656 89656 17.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0008%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold569 SAMTools SNP 89716 89716 4.78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.44%3BPV4%3D1%2C0.0063%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C22:27 scaffold57 SAMTools SNP 113487 113487 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold574 SAMTools SNP 172353 172353 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold574 SAMTools SNP 195873 195873 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold575 SAMTools SNP 27773 27773 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold575 SAMTools SNP 27775 27775 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold575 SAMTools SNP 27778 27778 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold576 SAMTools SNP 255454 255454 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold576 SAMTools SNP 269376 269376 20.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5128%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D20%3BFQ%3D-14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C13:16 scaffold576 SAMTools SNP 269377 269377 45.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D20%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C21%2C0:39 scaffold576 SAMTools SNP 269379 269379 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold576 SAMTools SNP 270329 270329 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.00012%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold576 SAMTools SNP 270330 270330 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C1.7e-05%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C52:46 scaffold576 SAMTools SNP 276132 276132 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold576 SAMTools SNP 276367 276367 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold576 SAMTools SNP 279694 279694 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold576 SAMTools SNP 279695 279695 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold578 SAMTools SNP 87372 87372 25 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C0.0056%2C1%2C1.9e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C26:29 scaffold578 SAMTools SNP 98703 98703 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold578 SAMTools SNP 118912 118912 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold578 SAMTools SNP 147479 147479 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0322%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold578 SAMTools SNP 147764 147764 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D20%3BFQ%3D8.47%3BPV4%3D1%2C1%2C1%2C1.1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C35:38 scaffold578 SAMTools SNP 156595 156595 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold578 SAMTools SNP 156597 156597 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold578 SAMTools SNP 293742 293742 24.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.2%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold578 SAMTools SNP 293744 293744 17.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.00034%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold578 SAMTools SNP 330001 330001 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold578 SAMTools SNP 330004 330004 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D4.11%3BPV4%3D1%2C6.6e-05%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C29:32 scaffold578 SAMTools SNP 330047 330047 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C33:36 scaffold578 SAMTools SNP 330407 330407 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D16.1%3BPV4%3D1%2C2.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C63:46 scaffold580 SAMTools SNP 256548 256548 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0010%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0022%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold583 SAMTools SNP 209375 209375 41.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold583 SAMTools SNP 209433 209433 26.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0081%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C14:17 scaffold583 SAMTools SNP 707184 707184 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold583 SAMTools SNP 830482 830482 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold583 SAMTools SNP 830484 830484 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold586 SAMTools SNP 324056 324056 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold587 SAMTools SNP 56171 56171 17.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold587 SAMTools SNP 56188 56188 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.014%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C58:33 scaffold588 SAMTools SNP 285220 285220 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold588 SAMTools SNP 285240 285240 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold591 SAMTools SNP 273027 273027 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold591 SAMTools SNP 273029 273029 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold591 SAMTools SNP 353888 353888 5.29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold591 SAMTools SNP 432161 432161 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold591 SAMTools SNP 436048 436048 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.051%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold591 SAMTools SNP 828874 828874 31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C44:47 scaffold591 SAMTools SNP 828892 828892 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C62:47 scaffold591 SAMTools SNP 828896 828896 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C62:47 scaffold591 SAMTools SNP 872981 872981 5.47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5019%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-7.13%3BPV4%3D1%2C1%2C1%2C7.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C21:26 scaffold591 SAMTools SNP 872982 872982 15.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C1%2C1%2C3.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold591 SAMTools SNP 872990 872990 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D15%3BPV4%3D1%2C0.26%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C57:44 scaffold591 SAMTools SNP 872991 872991 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D18.9%3BPV4%3D1%2C0.09%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C59:49 scaffold591 SAMTools SNP 1176208 1176208 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0171%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold592 SAMTools SNP 151126 151126 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold593 SAMTools SNP 414310 414310 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D20%3BPV4%3D1%2C6.6e-05%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C50:50 scaffold593 SAMTools SNP 568820 568820 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0359%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C1.6e-05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C19:22 scaffold593 SAMTools SNP 568823 568823 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0083%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold593 SAMTools SNP 597444 597444 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D20%3BFQ%3D4.56%3BPV4%3D1%2C0.057%2C1%2C2.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C30:33 scaffold593 SAMTools SNP 597445 597445 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D20%3BFQ%3D4.11%3BPV4%3D1%2C2.1e-07%2C1%2C2.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C29:32 scaffold594 SAMTools SNP 16946 16946 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.1%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold594 SAMTools SNP 248058 248058 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.00065%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold594 SAMTools SNP 386129 386129 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold596 SAMTools SNP 113240 113240 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold596 SAMTools SNP 113243 113243 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold596 SAMTools SNP 117088 117088 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D20.3%3BPV4%3D1%2C1%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C48:50 scaffold596 SAMTools SNP 117138 117138 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold597 SAMTools SNP 54325 54325 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold6 SAMTools SNP 253823 253823 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold6 SAMTools SNP 253825 253825 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold601 SAMTools SNP 72465 72465 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold601 SAMTools SNP 72466 72466 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold601 SAMTools SNP 83095 83095 28.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-28%3BPV4%3D1%2C3.9e-05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C1%2C0:4 scaffold601 SAMTools SNP 248476 248476 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold601 SAMTools SNP 578499 578499 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.027%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold601 SAMTools SNP 578500 578500 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.075%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold601 SAMTools SNP 588534 588534 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D20%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C90%2C0:99 scaffold602 SAMTools SNP 107809 107809 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold602 SAMTools SNP 107811 107811 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold602 SAMTools SNP 119048 119048 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.039%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold602 SAMTools SNP 119153 119153 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold602 SAMTools SNP 346054 346054 24.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.0033%2C1%2C7.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold602 SAMTools SNP 346056 346056 28.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C11:14 scaffold602 SAMTools SNP 353083 353083 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D6.2%3BPV4%3D1%2C0.019%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C65:31 scaffold602 SAMTools SNP 353085 353085 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C10%2C0%3BMQ%3D20%3BFQ%3D28.6%3BPV4%3D1%2C1%2C1%2C9.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C61:59 scaffold602 SAMTools SNP 354142 354142 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D-5.45%3BPV4%3D1%2C9.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C23:26 scaffold602 SAMTools SNP 448001 448001 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold602 SAMTools SNP 528002 528002 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold602 SAMTools SNP 788580 788580 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold602 SAMTools SNP 789055 789055 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold604 SAMTools SNP 38857 38857 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold604 SAMTools SNP 46024 46024 6.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5553%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-20%3BPV4%3D1%2C0.18%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C7:12 scaffold604 SAMTools SNP 46026 46026 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.05%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold604 SAMTools SNP 46033 46033 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D9.47%3BPV4%3D1%2C0.052%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C54:37 scaffold606 SAMTools SNP 280504 280504 22.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C18%2C0:32 scaffold61 SAMTools SNP 86123 86123 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold610 SAMTools SNP 5578 5578 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold610 SAMTools SNP 342535 342535 23 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D24.8%3BPV4%3D1%2C3.8e-05%2C1%2C2.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C58:55 scaffold610 SAMTools SNP 343031 343031 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold610 SAMTools SNP 361434 361434 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.00044%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold610 SAMTools SNP 361465 361465 39.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0014%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold610 SAMTools SNP 361914 361914 15.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.0001%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold610 SAMTools SNP 375454 375454 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold610 SAMTools SNP 375455 375455 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold610 SAMTools SNP 419954 419954 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold610 SAMTools SNP 431975 431975 18.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold610 SAMTools SNP 432069 432069 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D23%3BPV4%3D1%2C0.0052%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C53:53 scaffold610 SAMTools SNP 507858 507858 6.99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.069%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold612 SAMTools SNP 22317 22317 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold614 SAMTools SNP 117321 117321 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold616 SAMTools SNP 210452 210452 6.99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold616 SAMTools SNP 210471 210471 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C1%2C1%2C1.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C44:46 scaffold616 SAMTools SNP 213065 213065 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C0%3BMQ%3D20%3BFQ%3D25.8%3BPV4%3D1%2C0.46%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C54:56 scaffold616 SAMTools SNP 260323 260323 27.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold616 SAMTools SNP 260324 260324 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold617 SAMTools SNP 158612 158612 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D20%3BFQ%3D20%3BPV4%3D1%2C2.4e-07%2C1%2C7.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C50:50 scaffold617 SAMTools SNP 261199 261199 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0010%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.042%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold619 SAMTools SNP 343244 343244 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold619 SAMTools SNP 991975 991975 15.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.0076%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold619 SAMTools SNP 995923 995923 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold619 SAMTools SNP 995962 995962 6.99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold62 SAMTools SNP 275322 275322 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.15%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold62 SAMTools SNP 275338 275338 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold62 SAMTools SNP 275339 275339 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold621 SAMTools SNP 294543 294543 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C6%3BMQ%3D20%3BFQ%3D9.52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C61:37 scaffold621 SAMTools SNP 340677 340677 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C45%3BMQ%3D20%3BFQ%3D-131%3BPV4%3D1%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C104%2C0:99 scaffold621 SAMTools SNP 340745 340745 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold621 SAMTools SNP 340853 340853 54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D20%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C78%2C0:99 scaffold621 SAMTools SNP 340858 340858 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C44%3BMQ%3D20%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C132%2C0:99 scaffold621 SAMTools SNP 341943 341943 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C9%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C5.6e-09%2C1%2C2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C63:40 scaffold621 SAMTools SNP 342265 342265 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7960%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C3128%2C0%2C4109%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C33:36 scaffold622 SAMTools SNP 83000 83000 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D4.63%3BPV4%3D1%2C0.00087%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C43:28 scaffold622 SAMTools SNP 86767 86767 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold622 SAMTools SNP 471475 471475 5.29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold622 SAMTools SNP 476030 476030 37.1 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0%2C61%2C1%2C58:33 scaffold622 SAMTools SNP 515855 515855 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold625 SAMTools SNP 68298 68298 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold625 SAMTools SNP 498426 498426 15.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.38%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold625 SAMTools SNP 498427 498427 17.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold625 SAMTools SNP 536513 536513 46.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D20%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold625 SAMTools SNP 536763 536763 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0053%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C12%2C0%3BMQ%3D20%3BFQ%3D29.3%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C61:59 scaffold625 SAMTools SNP 723040 723040 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold625 SAMTools SNP 723041 723041 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold625 SAMTools SNP 777903 777903 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold625 SAMTools SNP 777919 777919 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0077%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold625 SAMTools SNP 777920 777920 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0066%2C1%2C9.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold626 SAMTools SNP 36285 36285 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold63 SAMTools SNP 26525 26525 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold63 SAMTools SNP 399194 399194 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C6.7e-12%2C1%2C1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C63:40 scaffold63 SAMTools SNP 399661 399661 48 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D20%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C84%2C0%2C74%2C52%2C68:99 scaffold630 SAMTools SNP 175660 175660 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold630 SAMTools SNP 460234 460234 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0060%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold630 SAMTools SNP 526485 526485 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold630 SAMTools SNP 526495 526495 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold630 SAMTools SNP 526502 526502 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C0.015%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C60:41 scaffold630 SAMTools SNP 526503 526503 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C0.36%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C60:41 scaffold632 SAMTools SNP 2303 2303 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold632 SAMTools SNP 2304 2304 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold632 SAMTools SNP 42889 42889 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold64 SAMTools SNP 39549 39549 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold640 SAMTools SNP 91578 91578 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.029%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold640 SAMTools SNP 91579 91579 17.7 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.032%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold647 SAMTools SNP 49977 49977 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold655 SAMTools SNP 246929 246929 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold655 SAMTools SNP 284477 284477 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold655 SAMTools SNP 384496 384496 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold655 SAMTools SNP 384498 384498 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold655 SAMTools SNP 396099 396099 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold665 SAMTools SNP 125622 125622 15.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.0014%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C5:8 scaffold67 SAMTools SNP 363170 363170 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold676 SAMTools SNP 452360 452360 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0186%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold678 SAMTools SNP 526195 526195 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.26%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C19:22 scaffold678 SAMTools SNP 536400 536400 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold678 SAMTools SNP 719237 719237 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold678 SAMTools SNP 1051582 1051582 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold678 SAMTools SNP 1153941 1153941 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold678 SAMTools SNP 1167229 1167229 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D4.69%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C34:31 scaffold678 SAMTools SNP 1167422 1167422 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold681 SAMTools SNP 104747 104747 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold681 SAMTools SNP 106629 106629 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold682 SAMTools SNP 24153 24153 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold682 SAMTools SNP 24154 24154 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold682 SAMTools SNP 47744 47744 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold683 SAMTools SNP 87718 87718 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold683 SAMTools SNP 178943 178943 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold683 SAMTools SNP 180699 180699 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold694 SAMTools SNP 172898 172898 22.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D20%3BFQ%3D-10.4%3BPV4%3D1%2C0.00086%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C17:20 scaffold695 SAMTools SNP 135230 135230 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C6%3BMQ%3D20%3BFQ%3D17%3BPV4%3D1%2C0.00029%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C62:47 scaffold695 SAMTools SNP 178406 178406 3.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold698 SAMTools SNP 101565 101565 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold698 SAMTools SNP 453475 453475 27.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0041%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold70 SAMTools SNP 181282 181282 17.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.086%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold70 SAMTools SNP 192646 192646 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C11%3BMQ%3D20%3BFQ%3D12.3%3BPV4%3D1%2C0.069%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C39:42 scaffold70 SAMTools SNP 192734 192734 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C13%3BMQ%3D20%3BFQ%3D3.01%3BPV4%3D1%2C1.6e-13%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C27:30 scaffold70 SAMTools SNP 375277 375277 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold70 SAMTools SNP 479536 479536 35.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold70 SAMTools SNP 614241 614241 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold70 SAMTools SNP 688706 688706 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold70 SAMTools SNP 799640 799640 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold70 SAMTools SNP 805213 805213 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold705 SAMTools SNP 10060 10060 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C10%3BMQ%3D20%3BFQ%3D7.8%3BPV4%3D1%2C0.0082%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C34:37 scaffold705 SAMTools SNP 10061 10061 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C10%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C0.00015%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C26:29 scaffold705 SAMTools SNP 252673 252673 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold709 SAMTools SNP 327434 327434 5.29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold71 SAMTools SNP 371149 371149 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold711 SAMTools SNP 11250 11250 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold712 SAMTools SNP 10 10 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold712 SAMTools SNP 12 12 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold712 SAMTools SNP 383217 383217 24.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.04%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold712 SAMTools SNP 383219 383219 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold712 SAMTools SNP 384687 384687 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold713 SAMTools SNP 17409 17409 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold713 SAMTools SNP 209738 209738 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold718 SAMTools SNP 43356 43356 27.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold718 SAMTools SNP 43358 43358 27.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold72 SAMTools SNP 284610 284610 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold721 SAMTools SNP 171177 171177 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold721 SAMTools SNP 471735 471735 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold722 SAMTools SNP 34197 34197 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold722 SAMTools SNP 34198 34198 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold722 SAMTools SNP 222524 222524 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.048%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold724 SAMTools SNP 22296 22296 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold724 SAMTools SNP 24707 24707 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold724 SAMTools SNP 24708 24708 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold726 SAMTools SNP 63228 63228 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold726 SAMTools SNP 166169 166169 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold728 SAMTools SNP 134555 134555 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold730 SAMTools SNP 441305 441305 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0107%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold730 SAMTools SNP 603289 603289 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold733 SAMTools SNP 457112 457112 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold733 SAMTools SNP 457118 457118 3.41 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C17%2C11%2C31%2C0%2C28:4 scaffold733 SAMTools SNP 461442 461442 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold733 SAMTools SNP 699503 699503 24.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold733 SAMTools SNP 699531 699531 15.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold747 SAMTools SNP 255525 255525 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.0055%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold748 SAMTools SNP 208939 208939 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold748 SAMTools SNP 211588 211588 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold750 SAMTools SNP 153879 153879 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C13%3BMQ%3D20%3BFQ%3D21.8%3BPV4%3D1%2C0.00012%2C1%2C1.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C61:52 scaffold750 SAMTools SNP 153880 153880 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C9%3BMQ%3D20%3BFQ%3D6.2%3BPV4%3D1%2C4.7e-05%2C1%2C5.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C60:31 scaffold750 SAMTools SNP 153888 153888 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C7%3BMQ%3D20%3BFQ%3D14.2%3BPV4%3D1%2C0.014%2C1%2C6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C65:43 scaffold750 SAMTools SNP 153889 153889 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C7%3BMQ%3D20%3BFQ%3D7.8%3BPV4%3D1%2C0.19%2C1%2C6.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C63:34 scaffold750 SAMTools SNP 154394 154394 8.93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold750 SAMTools SNP 154395 154395 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold750 SAMTools SNP 277094 277094 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold750 SAMTools SNP 551206 551206 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C22%2C0%3BMQ%3D20%3BFQ%3D-60%3BPV4%3D1%2C1.5e-12%2C1%2C3.6e-06;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C33%2C0:62 scaffold750 SAMTools SNP 551291 551291 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D8%2C0%2C22%2C0%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C26:29 scaffold751 SAMTools SNP 167416 167416 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold751 SAMTools SNP 406769 406769 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold754 SAMTools SNP 330416 330416 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0014%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D20%3BFQ%3D4.11%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C29:32 scaffold759 SAMTools SNP 37282 37282 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold759 SAMTools SNP 37284 37284 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold76 SAMTools SNP 137487 137487 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold760 SAMTools SNP 61022 61022 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold760 SAMTools SNP 390568 390568 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold760 SAMTools SNP 776780 776780 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D16%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold760 SAMTools SNP 781050 781050 13.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.0012%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C5:8 scaffold767 SAMTools SNP 51613 51613 8.93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.065%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold767 SAMTools SNP 51615 51615 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.0076%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold77 SAMTools SNP 168949 168949 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.0076%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold77 SAMTools SNP 1268826 1268826 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold77 SAMTools SNP 1493233 1493233 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D20%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C24%2C0:45 scaffold77 SAMTools SNP 1499575 1499575 15.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.011%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold77 SAMTools SNP 1499576 1499576 15.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.011%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold771 SAMTools SNP 147 147 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold771 SAMTools SNP 150 150 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C24%2C0%3BMQ%3D20%3BFQ%3D-66%3BPV4%3D1%2C0.003%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C39%2C0:72 scaffold771 SAMTools SNP 202 202 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D20%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C84%2C0:99 scaffold771 SAMTools SNP 92821 92821 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0060%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold771 SAMTools SNP 92836 92836 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold780 SAMTools SNP 400041 400041 3.41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold780 SAMTools SNP 702174 702174 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C12%2C0%3BMQ%3D20%3BFQ%3D21.8%3BPV4%3D1%2C0.007%2C1%2C7.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C49:52 scaffold780 SAMTools SNP 702187 702187 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C22%2C0%3BMQ%3D20%3BFQ%3D25.3%3BPV4%3D1%2C4.5e-07%2C1%2C3.5e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C57:55 scaffold780 SAMTools SNP 702189 702189 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C25%2C0%3BMQ%3D20%3BFQ%3D25.5%3BPV4%3D1%2C3.5e-12%2C1%2C2e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C56:55 scaffold780 SAMTools SNP 702921 702921 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C57%2C0%3BMQ%3D20%3BFQ%3D13.7%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C42:44 scaffold780 SAMTools SNP 930441 930441 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold780 SAMTools SNP 930442 930442 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold782 SAMTools SNP 95021 95021 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold782 SAMTools SNP 95022 95022 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold782 SAMTools SNP 193558 193558 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0199%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold782 SAMTools SNP 206703 206703 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold784 SAMTools SNP 613114 613114 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold784 SAMTools SNP 613116 613116 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold784 SAMTools SNP 645759 645759 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold786 SAMTools SNP 156884 156884 30.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold787 SAMTools SNP 277789 277789 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C15%3BMQ%3D20%3BFQ%3D-6.18%3BPV4%3D1%2C6.6e-09%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C22:25 scaffold787 SAMTools SNP 277790 277790 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C9%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C2.9e-07%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C37:40 scaffold787 SAMTools SNP 277798 277798 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.0057%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold787 SAMTools SNP 277799 277799 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.0091%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold789 SAMTools SNP 1320 1320 17.7 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold789 SAMTools SNP 1322 1322 35.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold789 SAMTools SNP 45579 45579 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold789 SAMTools SNP 154576 154576 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0008%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D20%3BFQ%3D5.23%3BPV4%3D1%2C9.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C31:34 scaffold789 SAMTools SNP 277650 277650 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold79 SAMTools SNP 411775 411775 14.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold79 SAMTools SNP 640852 640852 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C0.00021%2C1%2C0.00076;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C26:29 scaffold79 SAMTools SNP 640853 640853 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0062%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold79 SAMTools SNP 641898 641898 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.058%2C1%2C2.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold79 SAMTools SNP 641899 641899 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.058%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold79 SAMTools SNP 710173 710173 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold790 SAMTools SNP 46422 46422 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold790 SAMTools SNP 46423 46423 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold790 SAMTools SNP 190174 190174 37.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C15%3BMQ%3D20%3BFQ%3D-40%3BPV4%3D1%2C0.025%2C1%2C1.9e-10;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C13%2C0:23 scaffold790 SAMTools SNP 190176 190176 22.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D20%3BFQ%3D-10.4%3BPV4%3D1%2C0.0085%2C1%2C1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C17:20 scaffold790 SAMTools SNP 190181 190181 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold790 SAMTools SNP 190777 190777 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D20%3BFQ%3D6.2%3BPV4%3D1%2C0.021%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C65:31 scaffold790 SAMTools SNP 199941 199941 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C20%3BMQ%3D20%3BFQ%3D28.6%3BPV4%3D1%2C0.027%2C1%2C8.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C57:59 scaffold790 SAMTools SNP 199943 199943 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C11%3BMQ%3D20%3BFQ%3D24.8%3BPV4%3D1%2C0.012%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C64:55 scaffold790 SAMTools SNP 292232 292232 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold794 SAMTools SNP 239303 239303 25.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold796 SAMTools SNP 68749 68749 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold796 SAMTools SNP 68750 68750 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold796 SAMTools SNP 70466 70466 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold796 SAMTools SNP 70467 70467 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold801 SAMTools SNP 106891 106891 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C114%2C0%2C130%3BMQ%3D20%3BFQ%3D24.5%3BPV4%3D1%2C7.3e-12%2C1%2C5e-145;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C52:55 scaffold801 SAMTools SNP 106912 106912 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C10%2C0%2C64%3BMQ%3D20%3BFQ%3D-95%3BPV4%3D1%2C8.8e-06%2C1%2C1.6e-23;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C68%2C0:66 scaffold801 SAMTools SNP 106914 106914 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C5%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C0.00011%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C63:39 scaffold801 SAMTools SNP 106921 106921 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D20%3BFQ%3D16.1%3BPV4%3D1%2C0.075%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C46:46 scaffold801 SAMTools SNP 261694 261694 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold802 SAMTools SNP 163393 163393 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold802 SAMTools SNP 175470 175470 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold802 SAMTools SNP 232713 232713 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold802 SAMTools SNP 232784 232784 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold802 SAMTools SNP 253953 253953 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold802 SAMTools SNP 253954 253954 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold802 SAMTools SNP 269965 269965 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.087%2C1%2C6.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold802 SAMTools SNP 283704 283704 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold802 SAMTools SNP 283923 283923 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold802 SAMTools SNP 287384 287384 41.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold802 SAMTools SNP 287418 287418 17.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.44%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold804 SAMTools SNP 383753 383753 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold806 SAMTools SNP 97313 97313 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C9.2e-05%2C1%2C3.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold806 SAMTools SNP 97315 97315 6.99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.0084%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold808 SAMTools SNP 118907 118907 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.17%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold808 SAMTools SNP 573248 573248 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold808 SAMTools SNP 573249 573249 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold814 SAMTools SNP 136207 136207 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold817 SAMTools SNP 115739 115739 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold818 SAMTools SNP 393924 393924 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold82 SAMTools SNP 104421 104421 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold833 SAMTools SNP 283139 283139 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C13%3BMQ%3D20%3BFQ%3D3.02%3BPV4%3D1%2C6.8e-05%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C27:30 scaffold833 SAMTools SNP 283140 283140 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D20%3BFQ%3D16.1%3BPV4%3D1%2C0.0064%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C44:46 scaffold833 SAMTools SNP 283169 283169 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold837 SAMTools SNP 23820 23820 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold839 SAMTools SNP 18575 18575 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold847 SAMTools SNP 149860 149860 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold847 SAMTools SNP 300905 300905 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold847 SAMTools SNP 300906 300906 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold847 SAMTools SNP 302029 302029 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D20%3BFQ%3D6.97%3BPV4%3D1%2C0.43%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C57:33 scaffold847 SAMTools SNP 302111 302111 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold85 SAMTools SNP 46367 46367 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold85 SAMTools SNP 112657 112657 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D20%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C39%2C0:75 scaffold85 SAMTools SNP 113094 113094 27.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold85 SAMTools SNP 113135 113135 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold85 SAMTools SNP 185103 185103 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold85 SAMTools SNP 472229 472229 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C5%3BMQ%3D20%3BFQ%3D10.4%3BPV4%3D1%2C0.36%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C62:39 scaffold85 SAMTools SNP 472238 472238 41.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold85 SAMTools SNP 472240 472240 12.2 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C17%2C8%2C41%2C0%2C38:14 scaffold854 SAMTools SNP 55059 55059 29.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-28%3BPV4%3D1%2C0.14%2C1%2C4.2e-06;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C1%2C0:4 scaffold854 SAMTools SNP 55060 55060 29.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C4.2e-06;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C1%2C0:4 scaffold854 SAMTools SNP 116836 116836 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0365%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold854 SAMTools SNP 122666 122666 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold854 SAMTools SNP 122668 122668 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold854 SAMTools SNP 258049 258049 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C5%3BMQ%3D20%3BFQ%3D8.64%3BPV4%3D1%2C0.06%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C61:36 scaffold854 SAMTools SNP 258067 258067 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.0073%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold854 SAMTools SNP 258068 258068 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C0.21%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold854 SAMTools SNP 258082 258082 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold854 SAMTools SNP 258083 258083 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold854 SAMTools SNP 354558 354558 35.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold854 SAMTools SNP 354560 354560 8.93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.084%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold854 SAMTools SNP 355431 355431 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0098%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold854 SAMTools SNP 362757 362757 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D20%3BPV4%3D1%2C0.018%2C1%2C9.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C50:50 scaffold854 SAMTools SNP 362759 362759 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0016%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C61:30 scaffold86 SAMTools SNP 84564 84564 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C0%3BMQ%3D20%3BFQ%3D22.8%3BPV4%3D1%2C0.0079%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C50:53 scaffold86 SAMTools SNP 85015 85015 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold86 SAMTools SNP 116777 116777 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold86 SAMTools SNP 116812 116812 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold86 SAMTools SNP 160466 160466 5.29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold86 SAMTools SNP 160488 160488 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D16.1%3BPV4%3D1%2C2.2e-05%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C46:46 scaffold86 SAMTools SNP 408518 408518 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold86 SAMTools SNP 1224023 1224023 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold86 SAMTools SNP 1224603 1224603 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold86 SAMTools SNP 1330763 1330763 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C40%2C0%2C26%3BMQ%3D20%3BFQ%3D14.7%3BPV4%3D1%2C7.6e-10%2C1%2C3.1e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C51:44 scaffold86 SAMTools SNP 1330773 1330773 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C19%3BMQ%3D20%3BFQ%3D21.8%3BPV4%3D1%2C0.00084%2C1%2C3.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C49:52 scaffold86 SAMTools SNP 1330774 1330774 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C12%3BMQ%3D20%3BFQ%3D29.3%3BPV4%3D1%2C6.2e-05%2C1%2C0.00084;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C58:59 scaffold86 SAMTools SNP 1330775 1330775 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D20%3BFQ%3D15%3BPV4%3D1%2C0.014%2C1%2C6.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C42:45 scaffold86 SAMTools SNP 1330776 1330776 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D20%3BFQ%3D20%3BPV4%3D1%2C0.041%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C50:50 scaffold86 SAMTools SNP 1330798 1330798 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold86 SAMTools SNP 1330800 1330800 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold866 SAMTools SNP 45157 45157 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold866 SAMTools SNP 45158 45158 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold867 SAMTools SNP 710975 710975 34.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0008%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D20%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C21%2C0:39 scaffold867 SAMTools SNP 892296 892296 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold867 SAMTools SNP 892297 892297 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold868 SAMTools SNP 101711 101711 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold880 SAMTools SNP 12908 12908 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold880 SAMTools SNP 68512 68512 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold880 SAMTools SNP 111304 111304 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold880 SAMTools SNP 111306 111306 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold885 SAMTools SNP 439833 439833 14.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold885 SAMTools SNP 524874 524874 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C40%3BMQ%3D20%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C120%2C0:99 scaffold885 SAMTools SNP 524919 524919 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C10%3BMQ%3D20%3BFQ%3D-3.53%3BPV4%3D1%2C8.1e-11%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C26:29 scaffold885 SAMTools SNP 527033 527033 34.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C13%3BMQ%3D20%3BFQ%3D-10.4%3BPV4%3D1%2C0.011%2C1%2C1.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C17:20 scaffold885 SAMTools SNP 527035 527035 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.007%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold890 SAMTools SNP 227559 227559 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C0.0036%2C1%2C3.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C52:46 scaffold890 SAMTools SNP 227560 227560 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D16.5%3BPV4%3D1%2C0.02%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C52:46 scaffold890 SAMTools SNP 306445 306445 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold896 SAMTools SNP 188800 188800 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold896 SAMTools SNP 188801 188801 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0098%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold896 SAMTools SNP 488036 488036 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold896 SAMTools SNP 526854 526854 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold896 SAMTools SNP 526855 526855 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold914 SAMTools SNP 211300 211300 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold914 SAMTools SNP 211302 211302 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold914 SAMTools SNP 277309 277309 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D20%3BFQ%3D16.3%3BPV4%3D1%2C0.0092%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C51:46 scaffold914 SAMTools SNP 422343 422343 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D20%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold914 SAMTools SNP 422844 422844 46.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D20%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold917 SAMTools SNP 5919 5919 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold917 SAMTools SNP 5920 5920 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold917 SAMTools SNP 26185 26185 35.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold917 SAMTools SNP 26186 26186 17.7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.13%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold917 SAMTools SNP 28554 28554 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold924 SAMTools SNP 19171 19171 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold924 SAMTools SNP 19173 19173 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold925 SAMTools SNP 67889 67889 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.055%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold926 SAMTools SNP 189455 189455 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold926 SAMTools SNP 189456 189456 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold929 SAMTools SNP 120039 120039 17.7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.011%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold929 SAMTools SNP 120040 120040 17.7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.011%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold930 SAMTools SNP 97727 97727 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold933 SAMTools SNP 39314 39314 35.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0365%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold933 SAMTools SNP 43976 43976 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold933 SAMTools SNP 356173 356173 17.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0.015%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold933 SAMTools SNP 356174 356174 8.93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.036%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold939 SAMTools SNP 195019 195019 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold939 SAMTools SNP 195020 195020 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold94 SAMTools SNP 24320 24320 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold94 SAMTools SNP 337627 337627 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold94 SAMTools SNP 337670 337670 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold94 SAMTools SNP 351091 351091 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold942 SAMTools SNP 201752 201752 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold947 SAMTools SNP 84118 84118 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0060%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D20%3BFQ%3D5.28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold947 SAMTools SNP 84486 84486 22.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D20%3BFQ%3D-10.4%3BPV4%3D1%2C0.00032%2C1%2C7.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C17:20 scaffold947 SAMTools SNP 84494 84494 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold948 SAMTools SNP 276879 276879 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold950 SAMTools SNP 225496 225496 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D20%3BFQ%3D10.3%3BPV4%3D1%2C9.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C41:40 scaffold950 SAMTools SNP 304171 304171 6.99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.022%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold950 SAMTools SNP 664874 664874 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C8%3BMQ%3D20%3BFQ%3D20.9%3BPV4%3D1%2C0.095%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C64:51 scaffold950 SAMTools SNP 665538 665538 34 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C15%3BMQ%3D20%3BFQ%3D25.7%3BPV4%3D1%2C0.0014%2C1%2C6.6e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C53:56 scaffold951 SAMTools SNP 40767 40767 8.93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0.15%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold954 SAMTools SNP 67414 67414 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C10%3BMQ%3D20%3BFQ%3D24.8%3BPV4%3D1%2C0.14%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C64:55 scaffold954 SAMTools SNP 67415 67415 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C9%3BMQ%3D20%3BFQ%3D20%3BPV4%3D1%2C0.42%2C1%2C7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C64:50 scaffold954 SAMTools SNP 69701 69701 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D5.46%3BPV4%3D1%2C0.0062%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C34:33 scaffold955 SAMTools SNP 148357 148357 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold955 SAMTools SNP 148412 148412 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D11.3%3BPV4%3D1%2C0.00075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold960 SAMTools SNP 55938 55938 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold962 SAMTools SNP 1145087 1145087 29.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D20%3BFQ%3D-28%3BPV4%3D1%2C0%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C1%2C0:4 scaffold967 SAMTools SNP 330710 330710 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold968 SAMTools SNP 50830 50830 27.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold968 SAMTools SNP 50831 50831 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold973 SAMTools SNP 642121 642121 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D20%3BFQ%3D12.2%3BPV4%3D1%2C1.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C60:41 scaffold975 SAMTools SNP 67210 67210 15.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C0.32%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold975 SAMTools SNP 67211 67211 15.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D20%3BFQ%3D-8.64%3BPV4%3D1%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold975 SAMTools SNP 69656 69656 8.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D20%3BFQ%3D-19%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C8:12 scaffold975 SAMTools SNP 87834 87834 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold977 SAMTools SNP 177883 177883 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold977 SAMTools SNP 202421 202421 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold980 SAMTools SNP 125559 125559 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold980 SAMTools SNP 262232 262232 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold980 SAMTools SNP 262233 262233 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold980 SAMTools SNP 454190 454190 27.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold980 SAMTools SNP 456985 456985 17.7 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D1%2C0%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold980 SAMTools SNP 456986 456986 24.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D-25%3BPV4%3D1%2C0.035%2C1%2C6.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C2:5 scaffold983 SAMTools SNP 219902 219902 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold983 SAMTools SNP 219945 219945 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold987 SAMTools SNP 114591 114591 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold987 SAMTools SNP 117077 117077 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D20%3BFQ%3D4.28%3BPV4%3D1%2C0.078%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C34:30 scaffold987 SAMTools SNP 123638 123638 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.04%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold987 SAMTools SNP 125325 125325 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C11%3BMQ%3D20%3BFQ%3D13.2%3BPV4%3D1%2C4.1e-09%2C1%2C1.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C59:42 scaffold987 SAMTools SNP 125332 125332 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C7%3BMQ%3D20%3BFQ%3D12.3%3BPV4%3D1%2C0.0029%2C1%2C8.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C65:41 scaffold987 SAMTools SNP 125334 125334 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C9%3BMQ%3D20%3BFQ%3D25.6%3BPV4%3D1%2C0.00038%2C1%2C2.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C63:56 scaffold987 SAMTools SNP 199978 199978 18.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D20%3BFQ%3D-26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C1:4 scaffold987 SAMTools SNP 199979 199979 40.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold987 SAMTools SNP 199987 199987 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D20%3BFQ%3D7.8%3BPV4%3D1%2C0.00012%2C1%2C1.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C64:34 scaffold987 SAMTools SNP 200294 200294 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold987 SAMTools SNP 323362 323362 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0194%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold987 SAMTools SNP 383008 383008 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0120%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold99 SAMTools SNP 229046 229046 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold99 SAMTools SNP 653781 653781 6.99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0010%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D20%3BFQ%3D-6.31%3BPV4%3D1%2C0.005%2C1%2C5.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C22:26 scaffold99 SAMTools SNP 653806 653806 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold99 SAMTools SNP 654506 654506 30.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D20%3BFQ%3D-16.1%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C11:14 scaffold99 SAMTools SNP 654508 654508 30.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D20%3BFQ%3D-16.1%3BPV4%3D1%2C0.045%2C1%2C3.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C11:14 scaffold993 SAMTools SNP 130165 130165 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D20%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold993 SAMTools SNP 162231 162231 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0196%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold999 SAMTools SNP 6056 6056 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D20%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6