!cat /Volumes/web/Mollusk/bs_larvae_exp/Uncompressed_Nov/filtered_BS_CgM1_ACTTGA_L004_R1.fastq /Volumes/web/Mollusk/bs_larvae_exp/Uncompressed_Sept/filtered_BS_CgM1_ACTTGA_L007_R1.fastq > /Volumes/web/Mollusk/bs_larvae_exp/Concatenated_Files_R1/M1_R1.fastq
!cat /Volumes/web/Mollusk/bs_larvae_exp/Uncompressed_Nov/filtered_BS_CgM1_ACTTGA_L004_R2.fastq /Volumes/web/Mollusk/bs_larvae_exp/Uncompressed_Sept/filtered_BS_CgM1_ACTTGA_L007_R2.fastq > /Volumes/web/Mollusk/bs_larvae_exp/Concatenated_Files_R2/M1_R2.fastq
ir="/usr/local/bin/irods3.2.icmds.mac.intel/"
!{ir}/icd Larvae
!icd /iplant/home/che625/Larvae/BSMAP
!iget /iplant/home/che625/Larvae/BSMAP/BSMAP_analysis_M1-2014-03-04-17-56-24.707/logs/condor-stdout-M1 /Volumes/web-1/Mollusk/bs_larvae_exp/BSMAP_output