In [71]: 
                                                                                          !wc /Volumes/web/scaphapoda/Hannah/Olurida_transcriptome_v3.fasta

 2883479 4872783 203983992 /Volumes/web/scaphapoda/Hannah/Olurida_transcriptome_v3.fasta
In [70]: 
!tail -10 /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_2_modified.txt

comp49213_c0_seq1	gnl	CDD	206026	44.07	59	33	0	76	252	2	60	1e-09	50.1
comp49275_c0_seq1	gnl	CDD	206651	49.28	69	35	0	25	231	133	201	7e-16	68.9
comp49322_c0_seq1	gnl	CDD	212671	42.39	92	47	3	266	3	78	167	3e-13	63.5
comp49420_c0_seq1	gnl	CDD	239676	31.11	90	58	1	1	270	17	102	8e-11	54.7
comp49480_c0_seq1	gnl	CDD	216032	43.21	81	44	2	4	240	59	139	5e-14	63.2
comp49514_c0_seq1	gnl	CDD	212044	45.71	70	38	0	2	211	86	155	5e-11	56.6
comp49551_c0_seq1	gnl	CDD	119337	49.02	51	23	1	146	3	276	326	3e-08	48.5
comp49560_c0_seq1	gnl	CDD	215827	44.64	56	26	2	41	193	3	58	4e-07	43.9
comp49595_c0_seq1	gnl	CDD	238822	45.61	57	25	2	227	57	163	213	6e-06	41.6
comp49647_c0_seq1	gnl	CDD	218141	53.85	39	18	0	102	218	1	39	1e-07	46.2
In [3]: 
!head /Volumes/web/scaphapoda/Hannah/Olurida_transcriptome_v3.fasta

>comp13_c0_seq1 len=486 path=[5581:0-485]
ATAAAGAGGATATGATGAATCGACATGATTGGTTAGAAAGGGCAGTATCCAACAGCAATC
ACTACATCTTCATTGTGACCAAACAAATGGGAGAAATATTTAATGAACCACTCTCGGAGG
AAAGAGAAGATAGAATGCGTTTGTTGACAGAGTGCGAGGATGGAACGTGTGCGTATACAG
TCAATTTGATAAGAAACAAATTTATCAAAAGCCGAAAGAACCCTGGATCATGTCACTTGG
TAAGTTTTGAAGAGGAGGACGAGAAAGTCGTCTCGCAGTTAAAACATGGACTTCAGTTGT
TTCAGAATGTCAGAACACATTGCTACCATTTATATACTGGAAAACGGTTCAGATATAACG
CCGCATGCAGCATAATCAATAATATCAAGAAAATAGAGTGATCAAGGAACCGGAAGACTA
ATCAGACTTTTGACTGGGTTTCTCAAAAACCTTGGTTCAGCTCAACCAGTGGTTAAATAC
TGTGTA
In [10]: 
!tail -10 /Volumes/web/scaphapoda/Hannah/Olurida_transcriptome_v3.fasta

>comp49669_c0_seq1 len=212 path=[159962678:0-211]
GCACCTGTGTTGAGTTTGTAATTCAAAATTATCTGTATTGTTTTCATAGCAATTATTCTT
ACTTAGAGAACATTTTTCATTGGCAACCGAGTACTCTCGTAATAAATTGATTAATAACTA
TATACTACCACAACGAACTTCAGGTACATCTTCTTATATAAGGAATACAATACAATACTA
CCACAACGAACTTTGGGTACATCTTATATAAG
>comp49670_c0_seq1 len=210 path=[159961787:0-209]
CAAACACAAGCATTAAATATCAACATAAGGAAATAAACAGCATGATTAGAATTCATAAAA
ACGGGTTAAAATGACAACATTTTAACTTCAAGAGTCATTAACTCTAAGATTGACTTCTAT
GCAGGAAAAATGAAAAATATGAAACAAACGCTGTAGGATAAAGTCAGACACAATATAAAC
ATGGTTGCTTAAAAATCCGTTGCTCTGTTG

[Refseq Prot] Oly Blast 1- Processing but not working

In [14]: 
!wc /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_refseq_protein.txt

       5      60     434 /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_refseq_protein.txt

[Cdd Delta] Oly Blast 2 Modified- Good

In [24]: 
!wc /Volumes/web/scaphapoda/Hannah/Blast/Modified\ Blasts/Oly_Blast_cdd_delta.txt

   35687  499618 2656883 /Volumes/web/scaphapoda/Hannah/Blast/Modified Blasts/Oly_Blast_cdd_delta.txt

[Vector] Oly Blast 3- Not working

In [15]: 
!wc /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_vector.txt

       0       0       0 /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_vector.txt

[refseq_genomic] Oly Blast 4- Good

In [4]: 
!wc /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_4_refseq_genomic.txt

     416    4992   38301 /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_4_refseq_genomic.txt

[env_nr] Oly Blast 5- Processing but not going all the way through

In [6]: 
!wc /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_5.txt

     108    1296    9059 /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_5.txt

[Nt] Oly Blast 6- Good

In [98]: 
!wc /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_6.txt

    2647   31764  244734 /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_6.txt

[est_others] Oly Blast 7- Waiting

In [2]: 
!wc /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_7.txt

wc: /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_7.txt: open: No such file or directory

[nr] Oly Blast 8- double check

In [1]: 
!wc /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_nr.txt

wc: /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_nr.txt: open: No such file or directory

[refseqgene] Oly Blast 9- Good but very short

In [2]: 
!wc /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_9.txt

     164    1968   15773 /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_9.txt

[Refseq RNA] Oly Blast 10- Good

In [124]: 
!wc /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_10.txt

    2825   33900  268857 /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_10.txt

[Env nt] Oly Blast 11- Good

In [16]: 
!wc /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_env_nt.txt

wc: /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_env_nt.txt: open: No such file or directory

[Uniprot Swissprot] Oly Blast 12- Good

In [132]: 
!wc /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_12.txt

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
    4472   53664  358907 /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_12.txt

[Swissprot] Oly Blast 13- not working

In [4]: 
!wc /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_swissprot.txt

       0       0       0 /Volumes/web/scaphapoda/Hannah/Blast/Oly_Blast_swissprot.txt

Modified Oly Blast 9 (refseq_gene)

In [23]: 
!tr '|' "\t" </Volumes/web/scaphapoda/Hannah/Blast/Modified\ Blasts/Oly_Blast_nr.txt> /Volumes/web/scaphapoda/Hannah/Blast/Modified\ Blasts/Oly_Blast_nr.txt
In []: