oyster.v9_M.fa.s12.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold198
Parameters: 2 7 7 80 10 50 500
Length:  1589021

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
825928--826093	81	2.0	81	91	0	269	28	13	16	40	1.86
828022--828108	21	4.2	21	82	1	104	42	13	16	27	1.86
828025--828109	42	2.0	42	88	0	125	40	14	16	29	1.88
828193--828402	21	10.0	21	76	9	160	33	15	14	35	1.89
828195--828403	104	2.0	105	85	2	287	34	15	14	34	1.89
828401--828535	21	6.4	21	86	0	153	35	14	20	29	1.92
828603--828687	21	4.0	21	81	0	98	29	17	12	40	1.87
829762--829800	19	2.0	20	90	5	62	48	7	7	35	1.61
829746--829854	41	2.6	43	75	8	109	40	11	11	36	1.78
829941--830088	21	6.7	21	70	20	79	46	7	8	37	1.62
829881--830088	111	1.9	112	85	6	289	46	6	8	37	1.61
829916--830018	42	2.5	42	83	10	131	49	5	5	38	1.51
829917--830019	43	2.4	44	82	10	119	49	5	5	38	1.51
830017--830178	21	7.2	22	67	20	68	39	8	11	40	1.71
829874--830087	22	9.5	22	67	23	101	46	7	8	37	1.62
830027--830089	21	3.0	21	83	6	83	42	9	11	36	1.73
829881--830154	111	2.4	112	81	8	283	43	6	9	40	1.64
832555--832660	21	5.0	21	79	6	117	26	15	11	47	1.79
835218--835326	25	4.4	25	80	4	130	36	11	30	22	1.88
835218--835339	25	4.9	25	79	4	120	36	10	30	22	1.88
835658--836048	25	15.6	25	80	2	383	36	9	29	24	1.87
834902--835780	440	2.0	439	100	0	1749	32	17	23	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
836240--836360	25	4.8	25	80	5	129	36	9	29	23	1.88
835928--836550	312	2.0	311	100	0	1237	34	13	25	27	1.93
841669--841832	4	41.8	4	75	12	153	28	22	3	45	1.69
841724--841832	35	3.1	35	85	5	132	28	22	3	45	1.69
841752--841832	11	7.6	11	70	20	57	27	23	3	45	1.69
842640--842767	4	32.2	4	84	7	172	26	22	3	47	1.66
855259--855801	277	2.0	277	94	0	962	30	21	17	30	1.96
855902--855976	36	2.1	36	100	0	150	33	10	8	48	1.67
858625--858671	21	2.2	21	96	0	85	38	12	19	29	1.89
858783--858968	21	8.9	21	70	7	108	30	13	18	38	1.89
858858--858981	42	3.0	41	77	13	117	29	12	18	38	1.88
858951--858998	21	2.3	20	82	10	60	31	16	10	41	1.82
859019--859065	21	2.2	21	88	0	67	40	17	17	25	1.90
859029--859076	21	2.3	21	92	0	78	41	14	14	29	1.85
859168--859240	21	3.4	21	83	5	76	28	17	15	38	1.90
860814--860842	14	2.1	14	100	0	58	20	20	20	37	1.94
860842--860878	2	18.5	2	100	0	74	0	0	48	51	1.00
864149--864264	56	2.1	57	98	1	225	32	13	21	31	1.92
867911--868210	150	2.0	149	99	0	591	34	18	17	29	1.94
868223--868470	36	6.9	36	97	0	464	37	22	13	27	1.91
870608--870767	23	7.0	23	97	0	293	22	34	23	20	1.97
871478--871603	48	2.4	52	74	17	125	28	23	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
871513--871610	48	2.0	49	92	5	164	25	26	18	29	1.98
890058--890209	29	5.2	29	80	3	178	38	22	15	23	1.93
890197--890232	17	2.1	17	100	0	72	30	22	11	36	1.89
895371--895436	2	33.0	2	90	6	107	1	48	0	50	1.10
906243--906690	166	2.7	166	89	2	652	35	15	23	25	1.94
908649--908740	43	2.1	43	93	0	157	50	8	6	34	1.59
913156--913716	26	21.1	26	86	6	761	41	15	11	31	1.83
914447--915239	31	25.5	31	85	3	1002	43	21	16	18	1.88
916873--917059	62	3.0	62	95	0	338	35	7	29	26	1.84
917032--917085	26	2.1	26	96	0	99	48	3	24	24	1.67
916970--917147	88	2.0	88	96	0	329	39	5	28	26	1.79
917058--917267	62	3.4	62	92	0	357	35	7	30	27	1.84
916908--917209	150	2.0	150	95	0	541	37	6	28	26	1.82
916873--917267	212	1.9	212	95	0	709	35	7	30	27	1.84
922844--922888	10	4.5	10	83	8	56	0	0	17	82	0.68
922844--922888	20	2.2	20	88	7	65	0	0	17	82	0.68
926383--926419	2	19.5	2	89	10	60	51	0	48	0	1.00
926383--926419	11	3.2	12	88	11	60	51	0	48	0	1.00
926383--926419	13	2.8	13	95	0	65	51	0	48	0	1.00
926383--926419	15	2.5	15	95	0	65	51	0	48	0	1.00
928659--928686	14	2.0	14	100	0	56	50	14	14	21	1.78
936413--936854	37	11.8	37	84	5	568	49	17	27	4	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
936413--936854	110	3.9	110	84	6	573	49	17	27	4	1.65
936675--936854	73	2.5	73	87	0	252	48	17	28	5	1.69
940778--940820	2	21.5	2	100	0	86	48	0	51	0	1.00
941134--941158	13	1.9	13	100	0	50	8	16	72	4	1.24
943933--943977	20	2.2	20	96	0	81	35	35	20	8	1.84
947034--947110	37	2.1	37	97	0	145	46	15	10	27	1.78
948390--948427	2	19.0	2	100	0	76	0	50	0	50	1.00
969585--969654	22	3.2	22	95	0	131	27	48	17	7	1.72
972992--973155	42	4.0	42	91	3	260	29	7	29	33	1.84
972992--973155	82	2.0	83	90	2	258	29	7	29	33	1.84
973132--973168	13	2.8	13	100	0	74	32	5	32	29	1.80
973092--973360	55	5.4	53	76	18	208	28	7	30	32	1.85
973145--973951	42	19.3	42	84	6	819	28	8	29	32	1.87
973269--973375	13	8.0	13	77	10	117	30	7	30	30	1.85
973241--973457	55	3.9	55	77	9	253	29	7	30	32	1.85
973272--973417	68	2.1	68	96	0	265	30	7	30	31	1.85
973148--974033	126	7.2	126	82	11	1043	29	8	29	32	1.86
973605--973838	55	4.2	55	75	12	260	29	8	29	32	1.87
973642--973699	30	1.9	30	96	0	107	29	8	32	29	1.87
973729--973825	29	3.5	28	74	8	108	28	8	28	34	1.86
973521--974033	253	2.0	251	92	3	852	29	7	29	33	1.86
973910--973980	29	2.4	30	95	4	128	29	7	28	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
973868--974022	71	2.2	71	98	0	301	29	7	29	34	1.84
973939--974033	42	2.3	42	96	3	174	30	6	29	33	1.82
977293--977318	13	2.0	13	100	0	52	30	7	30	30	1.85
977256--977599	42	8.2	42	94	0	589	29	9	28	31	1.89
977377--977402	13	2.0	13	100	0	52	30	7	30	30	1.85
977461--977486	13	2.0	13	100	0	52	30	7	30	30	1.85
977556--977628	29	2.5	29	90	0	119	27	10	27	34	1.90
977614--977667	13	4.2	13	95	0	90	29	11	31	27	1.91
977655--977725	29	2.4	29	92	0	115	26	9	28	35	1.88
977545--977731	97	1.9	97	92	0	311	28	9	28	33	1.88
979272--979298	11	2.5	11	100	0	54	55	11	14	18	1.68
989582--989785	33	6.2	33	96	0	363	19	37	26	16	1.93
995731--995774	21	2.1	21	95	0	79	61	2	4	31	1.28
1008268--1008337	22	3.2	22	100	0	140	37	12	22	27	1.91
1017221--1017272	20	2.6	20	87	0	77	28	28	15	26	1.96
1020843--1020901	11	5.5	11	94	6	104	54	25	10	10	1.65
1020843--1020903	21	2.9	21	95	4	106	52	27	9	9	1.66
1023717--1023802	2	43.5	2	96	2	156	48	0	51	0	1.00
1025741--1025825	10	8.3	10	88	5	125	11	11	28	48	1.75
1033280--1033318	12	3.4	11	92	3	60	20	35	10	33	1.86
1033467--1033538	21	3.4	21	72	14	76	34	5	12	47	1.65
1033459--1033541	42	2.0	42	97	0	157	33	6	12	48	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039202--1039235	14	2.4	14	95	0	59	35	32	11	20	1.89
1039648--1039684	15	2.4	16	83	16	51	62	2	2	32	1.23
1047151--1047225	12	6.2	12	90	0	114	1	38	24	36	1.64
1047152--1047218	4	16.8	4	80	0	80	1	41	23	32	1.64
1047230--1047886	146	4.5	146	87	3	889	29	19	20	30	1.97
1058400--1058556	48	3.3	48	100	0	314	56	15	8	19	1.65
1064163--1064197	18	1.9	18	88	0	52	40	11	14	34	1.82
1064739--1064780	18	2.3	18	83	0	57	30	14	14	40	1.85
1066252--1066519	53	5.1	53	92	0	437	36	26	16	21	1.94
1067573--1067765	73	2.6	73	95	0	332	30	13	17	38	1.89

Tables:   1   2   3   4   5