oyster.v9_M.fa.s14.2.7.7.80.10.50.500.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold962
Parameters: 2 7 7 80 10 50 500
Length:  1469792

Tables:   1   2   3   4   

This is table  4  of  4  ( 424 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1162622--1162679	4	14.5	4	88	0	62	36	25	37	0	1.57
1162625--1162687	12	5.2	12	88	0	90	38	25	36	0	1.56
1162622--1162687	16	4.1	16	92	0	114	37	25	36	0	1.57
1162629--1162688	4	15.0	4	89	0	66	40	25	35	0	1.56
1164381--1164455	2	38.0	2	97	2	143	0	49	0	50	1.00
1165303--1165345	22	1.9	22	90	4	68	55	0	2	41	1.12
1172825--1173417	38	15.4	38	91	4	942	24	12	18	44	1.84
1181785--1182136	165	2.1	164	89	2	537	26	16	18	38	1.92
1182303--1182340	12	3.2	12	88	3	60	39	26	34	0	1.57
1188262--1188296	2	17.5	2	100	0	70	51	0	48	0	1.00
1195648--1195706	3	19.3	3	89	3	91	32	33	0	33	1.58
1196563--1196612	16	3.1	16	77	5	55	24	30	10	36	1.88
1197321--1197356	16	2.2	16	95	0	63	36	27	13	22	1.92
1199597--1199639	2	21.5	2	100	0	86	48	0	51	0	1.00
1203978--1204514	171	3.2	170	84	5	678	26	25	15	32	1.95
1243998--1244026	2	14.5	2	100	0	58	51	0	0	48	1.00
1245759--1246089	165	2.0	164	98	1	644	32	20	16	30	1.95
1246117--1246191	2	37.5	2	100	0	150	49	0	50	0	1.00
1246880--1246908	2	14.5	2	100	0	58	51	0	0	48	1.00
1248033--1248428	198	2.0	197	99	0	783	37	12	11	38	1.80
1249023--1249098	2	38.0	2	100	0	152	50	0	50	0	1.00
1254179--1254253	27	2.8	27	80	9	100	38	12	12	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1254529--1254561	16	2.0	17	94	5	59	42	12	18	27	1.85
1262593--1262627	17	2.1	17	89	5	54	14	8	8	68	1.38
1262897--1262933	14	2.4	16	78	21	51	40	16	5	37	1.71
1262906--1262933	14	2.0	14	100	0	56	42	14	7	35	1.73
1270187--1270623	182	2.4	182	99	0	856	24	23	27	24	2.00
1271226--1271625	182	2.2	182	99	0	791	24	26	23	26	2.00
1271827--1271897	2	35.5	2	94	0	124	49	2	47	0	1.16
1273296--1273876	168	3.4	167	83	5	686	31	18	18	31	1.95
1274193--1274227	2	17.5	2	93	0	61	0	51	0	48	1.00
1286497--1286522	1	26.0	1	100	0	52	0	100	0	0	0.00
1286677--1286709	2	16.0	2	93	6	57	48	0	0	48	1.01
1286677--1286709	15	2.3	14	90	10	57	48	0	0	48	1.01
1289756--1289787	12	2.7	12	95	0	55	37	15	6	40	1.73
1305074--1305121	21	2.3	21	85	7	62	0	2	22	75	0.91
1340533--1340575	22	2.0	22	95	0	77	34	9	6	48	1.62
1352581--1352635	12	4.6	12	83	0	74	21	32	12	32	1.91
1352582--1352635	3	18.0	3	88	0	54	22	33	11	33	1.89
1352582--1352635	18	3.0	18	86	0	81	22	33	11	33	1.89
1352582--1352628	21	2.2	21	96	0	85	21	34	10	34	1.88
1361209--1361240	15	2.1	15	100	0	64	31	21	15	31	1.95
1371535--1371675	21	6.7	21	75	0	129	40	17	24	17	1.90
1371551--1371655	42	2.5	42	93	0	183	40	20	22	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1372666--1372799	21	6.4	21	76	6	110	39	18	23	17	1.92
1372675--1372779	42	2.5	42	93	0	183	40	20	22	16	1.91
1387549--1387588	19	2.1	19	85	0	53	15	2	15	67	1.34
1394485--1394511	2	13.5	2	100	0	54	0	48	0	51	1.00
1394821--1394874	2	27.0	2	100	0	108	50	0	50	0	1.00
1395220--1395254	16	2.2	16	94	0	61	40	14	14	31	1.86
1398455--1398503	23	2.1	23	96	0	89	28	28	8	34	1.86
1404791--1404826	2	18.0	2	94	0	63	0	47	0	52	1.00
1408772--1408838	2	33.5	2	96	0	125	0	47	0	52	1.00
1420485--1420509	10	2.5	10	100	0	50	64	8	0	28	1.22
1447220--1447250	16	2.0	15	93	6	53	32	19	6	41	1.77
1450885--1451232	49	7.0	49	85	8	479	27	10	31	30	1.90
1450885--1451232	96	3.5	98	84	9	479	27	10	31	30	1.90
1450904--1451204	155	1.9	155	91	4	491	27	10	31	29	1.90
1451552--1451582	2	15.5	2	100	0	62	0	51	0	48	1.00
1452804--1452841	2	19.0	2	94	0	67	0	47	0	52	1.00
1452890--1452924	2	17.5	2	100	0	70	0	48	0	51	1.00
1454546--1454711	88	1.9	89	91	2	271	34	10	18	36	1.85
1458984--1459032	2	24.5	2	100	0	98	0	51	0	48	1.00
1463831--1464455	168	3.7	168	86	4	853	29	20	19	29	1.97

Tables:   1   2   3   4

The End!