oyster.v9_M.fa.s24.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold211
Parameters: 2 7 7 80 10 50 500
Length:  1275876

Tables:   1   2   3   4   

This is table  2  of  4  ( 441 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461773--463396	60	27.1	60	90	3	2442	26	16	19	38	1.92
461773--463396	179	9.0	179	89	4	2450	26	16	19	38	1.92
461773--463396	239	6.8	239	89	4	2466	26	16	19	38	1.92
471841--471941	49	2.1	49	96	0	184	27	13	23	34	1.93
474222--474399	21	8.5	21	75	9	166	34	16	13	34	1.88
474222--474400	43	4.3	43	82	5	231	35	16	13	34	1.88
477435--477525	46	2.0	46	97	0	173	25	28	9	36	1.88
478774--478818	2	22.5	2	100	0	90	0	51	0	48	1.00
507006--507538	166	3.0	176	87	9	786	36	17	13	31	1.89
509475--509514	17	2.4	18	84	16	59	55	0	5	40	1.22
512540--512624	10	8.2	10	91	7	134	37	38	10	12	1.79
512539--512622	21	4.0	21	95	3	143	36	38	10	14	1.81
512540--512622	31	2.6	31	94	3	132	37	38	10	13	1.79
513128--513253	11	12.0	11	76	13	131	19	9	33	37	1.85
513128--513253	21	6.0	22	75	17	108	19	9	33	37	1.85
513128--513253	31	4.0	32	78	12	136	19	9	33	37	1.85
517662--517695	2	17.0	2	87	0	50	47	2	0	50	1.16
518221--518665	28	16.1	28	84	6	572	50	15	19	14	1.79
518292--518331	20	2.0	20	95	0	71	62	12	10	15	1.54
524264--524316	2	26.5	2	100	0	106	0	49	0	50	1.00
529294--529320	13	2.1	13	100	0	54	37	18	22	22	1.95
530091--530128	13	2.7	14	88	12	60	39	7	21	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534394--534421	14	2.0	14	100	0	56	28	14	14	42	1.84
535297--535376	26	3.1	26	96	0	142	33	35	17	13	1.89
539753--539838	41	2.1	41	95	0	154	20	25	22	31	1.98
542931--542974	1	44.0	1	90	0	70	0	95	0	4	0.27
543285--543449	86	1.9	86	92	0	276	43	16	16	24	1.87
544326--544350	11	2.3	11	100	0	50	56	8	0	36	1.29
564783--564856	10	8.6	9	71	23	61	35	20	14	29	1.93
564775--564853	25	3.2	25	100	0	158	35	18	16	29	1.93
564793--564840	15	3.5	15	68	26	52	35	20	16	27	1.94
569598--569837	21	11.2	21	83	5	239	32	14	17	36	1.89
569596--569837	43	5.6	43	83	3	281	31	14	16	37	1.89
569596--569828	22	10.8	22	82	2	215	30	14	17	37	1.89
570498--570758	21	12.2	21	84	2	261	34	16	13	35	1.89
570529--570759	65	3.6	64	85	2	284	34	17	13	34	1.89
570498--570758	86	3.0	86	94	0	452	34	16	13	35	1.89
605317--605550	65	3.6	65	87	5	314	31	20	20	27	1.98
605560--605621	32	1.9	32	83	3	79	32	19	16	32	1.94
608004--608033	13	2.3	13	94	0	51	13	6	13	66	1.43
612934--613034	42	2.4	42	80	8	116	32	14	15	36	1.89
612935--613004	21	3.3	21	80	6	88	32	15	15	35	1.90
612938--613037	21	4.8	21	76	10	80	35	15	15	35	1.88
612938--613052	21	5.6	20	77	11	65	35	13	14	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613296--613359	20	3.2	20	68	12	60	32	18	10	37	1.86
613273--613365	39	2.4	40	92	1	152	35	17	11	35	1.86
617972--618013	8	5.4	8	77	5	50	0	38	26	35	1.57
620111--620794	166	4.2	165	83	5	831	28	22	16	33	1.95
620113--620793	330	2.1	322	83	5	868	28	22	16	33	1.95
624527--624583	21	2.7	21	83	0	78	49	5	19	26	1.69
626013--626052	2	20.0	2	94	0	71	0	47	0	52	1.00
626719--626764	21	2.2	21	84	0	56	21	15	17	45	1.85
628636--628685	2	25.0	2	91	0	82	0	2	48	50	1.12
630415--630493	32	2.5	32	76	0	77	26	21	22	29	1.99
630416--630484	16	4.3	16	71	0	57	26	21	23	28	1.99
639734--639767	13	2.6	13	100	0	68	29	0	14	55	1.40
649700--649779	42	1.9	42	86	0	115	42	15	17	25	1.88
649707--649779	21	3.5	21	86	0	101	45	15	16	23	1.85
652472--652602	21	6.2	21	76	3	129	38	12	15	34	1.84
652472--652602	42	3.1	42	83	0	163	38	12	15	34	1.84
652691--652770	42	1.9	42	92	0	133	27	17	15	40	1.89
652691--652773	21	4.0	21	80	0	94	26	16	14	42	1.87
661142--661168	8	3.4	8	100	0	54	25	22	40	11	1.87
667589--667615	14	1.9	14	100	0	54	37	22	22	18	1.95
673324--674376	438	2.4	436	86	3	1438	29	16	15	38	1.90
674556--675380	435	1.9	433	85	3	1156	29	17	16	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691720--691762	10	4.3	9	85	11	50	0	2	16	81	0.79
693767--693824	21	2.8	20	79	7	62	36	15	12	36	1.85
694026--694188	27	6.5	27	74	17	120	39	18	16	25	1.91
693986--694140	75	2.1	75	91	2	249	40	18	16	25	1.90
694079--694302	21	9.7	21	65	23	76	39	17	18	24	1.92
694052--694316	48	5.6	48	88	4	403	39	18	17	25	1.92
694052--694308	94	2.7	94	89	5	401	39	17	17	25	1.91
697268--697351	42	2.0	42	88	9	127	38	14	17	29	1.90
697269--697349	22	3.8	22	75	11	87	35	14	18	30	1.91
697375--697415	20	2.0	20	95	0	73	21	29	24	24	1.99
698048--698374	42	7.5	42	73	12	228	25	18	34	22	1.96
698086--698237	53	3.1	53	66	20	128	25	18	34	21	1.96
698197--698363	87	2.0	84	81	8	194	26	17	34	22	1.96
699895--699927	12	2.8	12	86	4	50	0	36	27	36	1.57
705312--705336	1	25.0	1	100	0	50	100	0	0	0	0.00
706807--706884	39	2.0	39	100	0	156	33	20	12	33	1.91
709433--709799	43	8.6	43	86	1	373	37	13	15	33	1.87
709435--709796	64	5.7	63	83	2	382	37	13	15	32	1.87
709435--709791	107	3.3	107	94	0	615	36	14	15	33	1.88
710427--710514	21	4.1	21	81	5	70	30	15	14	38	1.88
710440--710732	43	6.8	43	88	0	442	35	15	15	34	1.89
713149--713200	2	26.0	2	100	0	104	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714485--714740	66	4.0	65	86	10	364	36	25	12	26	1.91
714492--714740	65	3.9	65	85	10	350	36	25	12	25	1.91
714483--714740	127	2.0	127	88	5	389	36	25	12	26	1.91
715019--715052	17	2.0	17	94	0	59	52	2	11	32	1.53
715082--715139	29	2.0	28	83	9	73	56	12	15	15	1.67
733588--733963	188	2.0	187	99	0	743	35	14	19	30	1.92
737062--737388	164	2.0	164	98	0	629	40	14	11	32	1.83
745943--746369	54	7.8	55	89	0	637	33	26	24	15	1.95
745943--746369	109	3.9	109	89	0	658	33	26	24	15	1.95
747229--747365	54	2.5	54	91	0	229	35	24	24	16	1.95
747230--747407	54	3.4	52	81	6	166	34	24	24	16	1.96
747539--747568	13	2.3	13	94	0	51	40	20	0	40	1.52
747767--747902	54	2.5	54	97	0	254	35	25	23	16	1.95
758127--758366	40	6.0	40	100	0	480	37	17	17	27	1.92
759625--759759	65	2.1	66	95	1	245	34	16	15	33	1.90
759466--759881	231	1.8	224	84	4	573	30	16	19	33	1.94
761469--761495	2	13.5	2	100	0	54	48	0	0	51	1.00
773166--773216	2	25.5	2	100	0	102	50	0	49	0	1.00
781158--781236	32	2.4	32	89	2	131	27	26	20	25	1.99
807469--807601	50	2.7	50	89	0	185	37	13	15	33	1.86
818597--818624	14	2.0	14	100	0	56	28	21	21	28	1.99
818663--818708	20	2.3	19	82	10	56	8	8	4	78	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
830112--830149	15	2.5	15	83	12	51	31	5	0	63	1.17
839170--839279	2	55.0	2	87	0	157	0	45	3	50	1.25
839423--839450	12	2.3	12	100	0	56	39	10	7	42	1.67
845299--845365	2	33.5	2	100	0	134	50	0	49	0	1.00
845299--845382	10	8.6	10	96	3	58	48	2	48	0	1.14
855500--855544	23	2.0	23	86	0	63	77	2	4	15	1.02
855505--855568	23	2.7	24	80	7	60	81	7	1	9	0.94
855536--855566	16	1.9	16	93	0	53	87	12	0	0	0.55
855511--855569	28	2.1	28	84	6	75	84	8	0	6	0.77
887560--887605	15	3.1	15	90	3	76	0	0	6	93	0.35

Tables:   1   2   3   4