oyster.v9_M.fa.s42.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold733
Parameters: 2 7 7 80 10 50 500
Length:  1111331

Tables:   1   2   3   

This is table  3  of  3  ( 320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
782180--782204	12	2.1	12	100	0	50	32	16	8	44	1.76
785471--785870	200	2.0	200	100	0	800	26	20	30	24	1.98
788387--788458	4	18.0	4	85	0	99	30	25	43	1	1.63
788378--788457	8	10.5	8	80	10	87	32	25	41	1	1.63
788378--788457	12	6.7	12	89	0	115	32	25	41	1	1.63
788549--788869	179	1.8	177	91	4	529	26	21	26	25	1.99
793365--793390	11	2.4	11	100	0	52	26	15	11	46	1.80
805842--805891	2	25.0	2	100	0	100	50	0	50	0	1.00
808613--808641	9	3.3	9	95	4	51	68	10	0	20	1.18
817908--818206	70	4.3	70	93	0	463	30	18	19	31	1.96
822940--822980	2	20.5	2	94	0	73	51	0	48	0	1.00
823667--823734	2	34.0	2	100	0	136	50	0	50	0	1.00
825873--826008	52	2.6	52	97	0	254	42	12	26	18	1.86
826484--826614	36	3.6	37	84	6	180	25	18	18	38	1.93
827765--828545	166	4.7	166	96	0	1395	34	16	21	26	1.95
853999--854037	2	19.5	2	100	0	78	51	0	48	0	1.00
854304--854370	8	7.8	9	84	15	72	1	41	0	56	1.08
854304--854371	16	4.2	16	94	0	91	1	42	0	55	1.08
854304--854371	6	11.3	6	88	0	91	1	42	0	55	1.08
854304--854371	10	6.8	10	91	0	91	1	42	0	55	1.08
854425--854575	71	2.1	71	83	1	196	41	13	17	27	1.87
855012--855046	2	17.5	2	87	0	52	45	5	48	0	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
855309--855356	2	24.0	2	91	0	78	0	45	0	54	0.99
868246--868288	19	2.3	19	100	0	86	6	18	0	74	1.04
872636--872963	180	1.8	180	93	1	577	29	16	17	36	1.92
878122--878254	33	4.0	33	98	0	248	30	12	21	36	1.89
881719--881888	86	2.0	84	97	1	313	32	11	20	34	1.89
882271--882313	2	21.5	2	100	0	86	0	48	0	51	1.00
884448--884535	43	2.0	43	97	0	167	31	23	22	21	1.98
888494--888524	13	2.4	13	100	0	62	9	6	0	83	0.79
890222--891014	166	4.8	166	89	2	1146	29	16	15	38	1.90
892291--892952	146	4.5	146	88	2	909	30	22	18	29	1.97
892957--892991	8	4.4	8	88	0	52	40	25	34	0	1.56
913053--913084	11	3.1	11	82	17	50	43	9	0	46	1.35
931024--931062	14	2.7	15	92	4	62	87	12	0	0	0.55
931024--931061	17	2.2	18	90	4	60	89	10	0	0	0.49
937051--937087	17	2.2	17	100	0	74	48	5	5	40	1.49
938378--939115	164	4.5	157	76	10	549	24	16	19	39	1.91
938443--939115	166	4.1	163	76	9	425	25	15	18	40	1.90
954330--954377	5	9.8	5	95	4	89	0	0	16	83	0.65
954965--955007	21	2.0	21	95	0	77	34	16	11	37	1.85
957858--958010	40	3.7	40	92	4	225	35	7	11	45	1.68
963898--963978	2	45.0	2	70	20	63	53	3	1	41	1.27
963896--963978	25	3.4	25	82	14	102	53	4	1	40	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
963898--963977	21	3.5	21	81	13	72	53	3	1	41	1.27
964411--964517	2	53.0	2	94	1	187	47	2	49	0	1.16
965364--965395	2	16.0	2	100	0	64	0	50	0	50	1.00
966171--966229	2	29.5	2	100	0	118	0	50	0	49	1.00
976979--977134	24	7.0	22	79	11	174	37	16	17	28	1.91
976979--977134	45	3.5	45	97	0	294	37	16	17	28	1.91
989173--989262	36	2.5	36	100	0	180	44	15	14	25	1.84
1009133--1009174	20	2.1	20	100	0	84	21	16	23	38	1.93
1011883--1012214	32	10.2	32	78	11	195	33	14	20	30	1.93
1012057--1012211	64	2.4	64	97	0	292	31	14	22	30	1.94
1019372--1019589	112	2.0	107	93	4	373	36	12	15	35	1.85
1022645--1022692	25	1.9	25	95	0	87	29	12	8	50	1.69
1027129--1027168	1	40.0	1	94	0	71	97	0	2	0	0.17
1028723--1028913	56	3.4	56	92	1	321	47	6	14	32	1.69
1031025--1031123	11	8.9	11	73	4	74	12	13	27	47	1.78
1031328--1031362	11	2.9	12	91	8	54	48	25	17	8	1.75
1032500--1032953	168	2.7	166	84	6	592	29	19	20	30	1.97
1054692--1054996	146	2.1	147	97	0	576	27	22	20	29	1.98
1059155--1060662	437	3.5	437	92	2	2449	30	17	15	35	1.92
1061525--1061580	4	14.0	4	86	0	58	30	25	39	5	1.78
1061517--1061579	16	3.9	16	87	0	81	33	25	36	4	1.77
1061516--1061580	20	3.2	20	84	0	76	32	24	38	4	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1062522--1062548	12	2.2	12	100	0	54	22	14	14	48	1.81
1069863--1070322	166	2.8	164	85	3	584	38	16	17	28	1.91
1070353--1070408	4	14.0	4	88	0	67	41	25	33	0	1.56
1070351--1070408	16	3.6	16	88	0	80	39	25	34	0	1.56
1070346--1070403	20	2.9	20	89	5	82	36	25	37	0	1.57
1073313--1073356	2	22.0	2	100	0	88	50	0	50	0	1.00
1075910--1075941	14	2.4	14	94	5	57	59	18	3	18	1.51
1078347--1078376	13	2.3	13	94	0	51	90	10	0	0	0.47
1078708--1078755	2	24.0	2	100	0	96	0	50	0	50	1.00
1104301--1104533	21	11.1	21	84	6	303	33	22	18	24	1.97
1105383--1105572	21	9.0	21	83	5	235	25	18	22	33	1.97
1105383--1105572	63	3.0	63	93	3	303	25	18	22	33	1.97
1110374--1110425	24	2.2	23	89	3	77	42	23	1	32	1.65
1110380--1110429	23	2.1	23	96	3	91	46	22	0	32	1.52

Tables:   1   2   3

The End!