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LabNotebook_html080113.enex
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2009 Hansen Salmon Notebook.resources/
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Aug 02 2013 07:22:58 AM
Abalone (WS-RLO) assembly comparison.resources/
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Aug 02 2013 07:16:16 AM
Abalone DAVID analysis.resources/
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Aug 02 2013 07:26:48 AM
Abalone DEG Blasting.resources/
-
Aug 02 2013 07:38:19 AM
Abalone notes.resources/
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Aug 02 2013 07:37:59 AM
Abalone RNA-seq.resources/
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Aug 02 2013 07:05:53 AM
Abalone short read analysis.resources/
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Aug 02 2013 07:27:29 AM
Abalone solid on PCR targets.resources/
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Aug 02 2013 07:38:15 AM
A better oyster protein set model.resources/
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Aug 02 2013 07:14:43 AM
Ab_Assembly SOAP.resources/
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Aug 02 2013 07:05:56 AM
AltSplice CLC.resources/
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Aug 02 2013 07:06:12 AM
AltSplice TopHat_ SplicingCompass.resources/
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Aug 02 2013 07:06:02 AM
Annotating Fosmids.resources/
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Aug 02 2013 07:22:38 AM
Annotating working Cg Scaffolds.resources/
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Aug 02 2013 07:21:42 AM
Artemis Manual.resources/
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Aug 02 2013 07:20:36 AM
Assembly Oyster "resequences".resources/
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Aug 02 2013 07:25:28 AM
Aurantiochytrium limacinum 454 data.resources/
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Aug 02 2013 07:30:01 AM
AY660003 Primer design.resources/
-
Aug 02 2013 07:25:54 AM
Backup of Elene's wiki notebook.resources/
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Aug 02 2013 07:26:29 AM
Bacto agar recipe.resources/
-
Aug 02 2013 07:38:35 AM
BedTools Manual.resources/
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Aug 02 2013 07:07:15 AM
Bigfish backup.resources/
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Aug 02 2013 07:28:31 AM
bigfishRAID full.resources/
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Aug 02 2013 07:26:33 AM
bigfishRAID full_1.resources/
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Aug 02 2013 07:29:58 AM
BigfishRAID space.resources/
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Aug 02 2013 07:28:23 AM
BiGill - combined notebook pages.resources/
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Aug 02 2013 07:04:58 AM
BiGill - Visualizing gene level methylation.resources/
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Aug 02 2013 07:05:06 AM
BiGO- methratio troubleshoot.resources/
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Aug 02 2013 07:05:08 AM
BiGO - Quality Assessment.resources/
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Aug 02 2013 07:05:24 AM
BiGO - Reproducing data _ Lambda.resources/
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Aug 02 2013 07:05:30 AM
BiGO - Reproducing data _ mapping to whole genome.resources/
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Aug 02 2013 07:05:27 AM
BiGO - Running Gill methratio through Galaxy wflow.resources/
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Aug 02 2013 07:05:01 AM
BIO533 - Removing Ribosomal RNA sequences.resources/
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Aug 02 2013 07:11:40 AM
BIO533 - Turtle Informatics - Specificity.resources/
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Aug 02 2013 07:15:46 AM
BIO533 - Turtle Virus Informatics.resources/
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Aug 02 2013 07:16:00 AM
BIO533 Annotating QPX assembly 21280.resources/
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Aug 02 2013 07:15:49 AM
BIO533 Annotating SNPs denovo.resources/
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Aug 02 2013 07:12:56 AM
BIO533 Annotating the QPX Genome.resources/
-
Aug 02 2013 07:14:57 AM
BIO533 DAVID QPX 2-FOLD DEG (WRONG GENE ID output).resources/
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Aug 02 2013 07:15:31 AM
BIO533 Mapping RNA-seq on Genome.resources/
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Aug 02 2013 07:14:59 AM
BIO533 Nonsynon SNP detection Transcriptome.resources/
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Aug 02 2013 07:14:50 AM
BIO533 QPX Annotation options.resources/
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Aug 02 2013 07:15:34 AM
BIO533 QPX CpG.resources/
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Aug 02 2013 07:14:54 AM
BIO533 QPX Taxonomic Representation.resources/
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Aug 02 2013 07:11:54 AM
BIO533 QPX Transcriptome 2fold DAVID Output.resources/
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Aug 02 2013 07:15:11 AM
BIO533 QPX Transcriptome GO Annotation.resources/
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Aug 02 2013 07:15:19 AM
BIO533 QPX transcriptome v1 against NCBI nt (BLAST).resources/
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Aug 02 2013 07:14:52 AM
BIO533 QPX value added nonsyn SNP.resources/
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Aug 02 2013 07:11:55 AM
BIO533 Revisiting RNA-seq QPX.resources/
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Aug 02 2013 07:08:05 AM
BIO533 Revisiting RNA-seq QPX seperate treatment.resources/
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Aug 02 2013 07:07:45 AM
BIO533 Workflow test.resources/
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Aug 02 2013 07:16:25 AM
Bismark.resources/
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Aug 02 2013 07:22:53 AM
Bismark on Cg Fosmid Scaffold.resources/
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Aug 02 2013 07:22:07 AM
Bismark on cg_v0.1.0.resources/
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Aug 02 2013 07:21:29 AM
BisSNP.resources/
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Aug 02 2013 07:11:04 AM
Black abalone musings.resources/
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Aug 02 2013 07:23:30 AM
Blast Vibrio consensus.resources/
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Aug 02 2013 07:26:31 AM
Bleached Coral Assembly.resources/
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Aug 02 2013 07:13:21 AM
brains.resources/
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Aug 02 2013 07:38:42 AM
brief MBD mapping on Sigenae 8.resources/
-
Aug 02 2013 07:35:10 AM
BSMAP.resources/
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Aug 02 2013 07:23:18 AM
BSMAP de novo annotation.resources/
-
Aug 02 2013 07:23:03 AM
BSMAP on Cg Fosmid Scaffold (aka cg_v0.1.1).resources/
-
Aug 02 2013 07:22:02 AM
BSMAP Readme.resources/
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Aug 02 2013 07:20:35 AM
BSMAP v2.resources/
-
Aug 02 2013 07:23:07 AM
BS_Seq on Sigenae 8.resources/
-
Aug 02 2013 07:22:47 AM
Carmel Ab Assembly.resources/
-
Aug 02 2013 07:05:48 AM
Ceramide metabolism.resources/
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Aug 02 2013 07:28:19 AM
Ceramide metabolism blast - follow up.resources/
-
Aug 02 2013 07:27:35 AM
Ceramide pathway paper notes.resources/
-
Aug 02 2013 07:31:54 AM
Ceramide pcr analysis.resources/
-
Aug 02 2013 07:29:08 AM
Cg BGI assembly.resources/
-
Aug 02 2013 07:25:08 AM
Cg fosmid Assembly.resources/
-
Aug 02 2013 07:24:56 AM
Cgigas Protein Annotation.resources/
-
Aug 02 2013 07:13:03 AM
Cgigas Proteomics Enrichment.resources/
-
Aug 02 2013 07:11:52 AM
Cgigas tag-seq CLC de novo.resources/
-
Aug 02 2013 07:11:03 AM
Cgigas tag-seq denovo assembly.resources/
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Aug 02 2013 07:11:27 AM
Cgigas tag-seq Experiment table.resources/
-
Aug 02 2013 07:11:17 AM
Cgigas tag-seq hashing.resources/
-
Aug 02 2013 07:11:19 AM
Cgigas tag-seq novoalign combined.resources/
-
Aug 02 2013 07:11:05 AM
Cgigas tag-seq on Sigenae.resources/
-
Aug 02 2013 07:11:32 AM
Cgigas tag-seq QC report.resources/
-
Aug 02 2013 07:11:06 AM
Cgigas tag-seq RNA-seq for QC visualization.resources/
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Aug 02 2013 07:09:06 AM
Cg mitochondria genome.resources/
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Aug 02 2013 07:25:58 AM
Cg PROPS additional analysis.resources/
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Aug 02 2013 07:26:14 AM
Cg PROPS more genes.resources/
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Aug 02 2013 07:26:01 AM
Cg PROPS SNP analysis (separate pops).resources/
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Aug 02 2013 07:26:03 AM
Cg PROPS SNP analysis common reference.resources/
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Aug 02 2013 07:26:10 AM
Cg VTG predicted intron junctions.resources/
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Aug 02 2013 07:24:48 AM
Changing Local Galaxy Server.resources/
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Aug 02 2013 07:11:33 AM
Checking correlation with SNPs and CpG ratio.resources/
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Aug 02 2013 07:28:07 AM
Clam ID genes within Enriched Set.resources/
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Aug 02 2013 07:25:13 AM
Clam RAD.resources/
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Aug 02 2013 07:30:12 AM
Clam RAD data.resources/
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Aug 02 2013 07:30:33 AM
Clam RAD Genetic Diversity.resources/
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Aug 02 2013 07:30:08 AM
Clam RNA-seq de novo annoation.resources/
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Aug 02 2013 07:35:22 AM
CLC bio Adding Annotations.resources/
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Aug 02 2013 07:38:04 AM
Cluster BootVolume full.resources/
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Aug 02 2013 07:28:22 AM
Coho Vitellogenin assay development.resources/
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Aug 02 2013 07:26:25 AM
Colony PCR Bisulfite and PGS.resources/
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Aug 02 2013 07:35:10 AM
Colton Collection Map.resources/
-
Aug 02 2013 07:19:09 AM
Combined Lake Trout (v1) Blast.resources/
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Aug 02 2013 07:35:34 AM
Combining LT muscle de novo.resources/
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Aug 02 2013 07:32:01 AM
Comparing RNA-seq metrics.resources/
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Aug 02 2013 07:33:52 AM
Comparing SeaFan and Nemostella.resources/
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Aug 02 2013 07:20:00 AM
Comparing v4.6 RNA-seq.resources/
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Aug 02 2013 07:33:47 AM
Consensus from Burge OsHV.resources/
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Aug 02 2013 07:35:14 AM
Converting Blast to GFF.resources/
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Aug 02 2013 07:15:33 AM
Converting DAVID output for specific gene identification.resources/
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Aug 02 2013 07:21:10 AM
Converting UniProt to KEGG.resources/
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Aug 02 2013 07:06:19 AM
Cookbook for R.resources/
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Aug 02 2013 07:07:23 AM
Cornell Data import.resources/
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Aug 02 2013 07:24:00 AM
Crosson Abalone Analysis.resources/
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Aug 02 2013 07:27:51 AM
Cufflinks on Galaxy.resources/
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Aug 02 2013 07:34:33 AM
Custom Databases for BIO533.resources/
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Aug 02 2013 07:16:35 AM
Daves HSP pcr.resources/
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Aug 02 2013 07:36:01 AM
DAVID questions.resources/
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Aug 02 2013 07:18:25 AM
DESeq Gill - MGonad.resources/
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Aug 02 2013 07:08:48 AM
Digital Normalization.resources/
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Aug 02 2013 07:23:54 AM
DNMT1 oyster.resources/
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Aug 02 2013 07:36:04 AM
DNMT3 salmonidae.resources/
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Aug 02 2013 07:37:57 AM
Dowloading oyster SRA data.resources/
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Aug 02 2013 07:28:34 AM
E2 Recp Genomic Stucture.resources/
-
Aug 02 2013 07:22:01 AM
Elene Meeting notes.resources/
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Aug 02 2013 07:32:11 AM
Elene NGS Vibrio analysis.resources/
-
Aug 02 2013 07:32:54 AM
Elene Vt annotations (5.1).resources/
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Aug 02 2013 07:19:02 AM
Emma OA notes.resources/
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Aug 02 2013 07:38:24 AM
Enterobacteria phage lambda.resources/
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Aug 02 2013 07:10:47 AM
Estrogen biosynthetic process.resources/
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Aug 02 2013 07:11:21 AM
Estrogen signalling.resources/
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Aug 02 2013 07:11:23 AM
Exploring New Swiss-Prot GO annotation workflow.resources/
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Aug 02 2013 07:23:21 AM
FHL Feeding _ DO Experiment.resources/
-
Aug 02 2013 07:22:44 AM
FISH546 Metagenomics.resources/
-
Aug 02 2013 07:06:30 AM
FISH546 Module 2.resources/
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Aug 02 2013 07:07:28 AM
FISH546 Module 3 - de novo assembly.resources/
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Aug 02 2013 07:08:22 AM
FISH546_TJGR Module 6 Sperm mCpG counts per gene.resources/
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Aug 02 2013 07:07:08 AM
Fixing MG Bedtools.resources/
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Aug 02 2013 07:05:00 AM
Function specific tracks for v032.resources/
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Aug 02 2013 07:19:57 AM
Galaxy workflow.resources/
-
Aug 02 2013 07:35:41 AM
Gavery BS plate.resources/
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Aug 02 2013 07:34:14 AM
Genomics Gateway.resources/
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Aug 02 2013 07:20:14 AM
Genomic Structure of Cg Elongation factor.resources/
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Aug 02 2013 07:26:20 AM
GO pivot.resources/
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Aug 02 2013 07:17:27 AM
Haliotis ESTs.resources/
-
Aug 02 2013 07:24:06 AM
Hansen Sockeye Sample Notes.resources/
-
Aug 02 2013 07:32:22 AM
Hardclam Analysis Revisited.resources/
-
Aug 02 2013 07:25:45 AM
Hard Clam Report Notes.resources/
-
Aug 02 2013 07:28:12 AM
Hard Clam Revisited AGAIN.resources/
-
Aug 02 2013 07:13:12 AM
Hard clam RNA-seq.resources/
-
Aug 02 2013 07:30:05 AM
Hard Clam RNAseq.resources/
-
Aug 02 2013 07:34:20 AM
Hard Clam RNAseq denovo annotation cont.resources/
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Aug 02 2013 07:32:44 AM
Hard drive Failure.resources/
-
Aug 02 2013 07:33:08 AM
Hard Drive Inventory.resources/
-
Aug 02 2013 07:24:04 AM
Harding Coho.resources/
-
Aug 02 2013 07:33:03 AM
Herring data manipulation.resources/
-
Aug 02 2013 07:38:31 AM
Herring SNP.resources/
-
Aug 02 2013 07:38:29 AM
Herring SNP annotations.resources/
-
Aug 02 2013 07:32:39 AM
Herring SNP revisions.resources/
-
Aug 02 2013 07:32:23 AM
Hofman 2008 calcification genes.resources/
-
Aug 02 2013 07:36:25 AM
How to convert BLAST results to GFF - BioStar.resources/
-
Aug 02 2013 07:21:36 AM
HSF1 and methylation.resources/
-
Aug 02 2013 07:28:01 AM
HSP70.resources/
-
Aug 02 2013 07:38:27 AM
HSP BS cloning plate.resources/
-
Aug 02 2013 07:35:50 AM
Hsp gel.resources/
-
Aug 02 2013 07:35:56 AM
Hsp gel photo.resources/
-
Aug 02 2013 07:35:53 AM
Hsp PCR # 1.resources/
-
Aug 02 2013 07:35:57 AM
HSP PCR #2.resources/
-
Aug 02 2013 07:35:51 AM
HSP PCR Gel #1.resources/
-
Aug 02 2013 07:36:00 AM
HSP protein and gene STATs.resources/
-
Aug 02 2013 07:29:35 AM
In Depth BLAST.resources/
-
Aug 02 2013 07:20:08 AM
Intron structure of H transporter (oyster).resources/
-
Aug 02 2013 07:24:26 AM
Jbrowse.resources/
-
Aug 02 2013 07:20:16 AM
Joins Between Tables - SQL Database Reference Material.resources/
-
Aug 02 2013 07:37:38 AM
Lake trout muscle RNA-seq.resources/
-
Aug 02 2013 07:33:03 AM
Lake Trout SNP data.resources/
-
Aug 02 2013 07:13:57 AM
Lake Trout v4 assembly.resources/
-
Aug 02 2013 07:14:06 AM
Lake Trout v5 assembly.resources/
-
Aug 02 2013 07:14:09 AM
LT454 denovo annotations continued.resources/
-
Aug 02 2013 07:31:12 AM
LT Enrichment.resources/
-
Aug 02 2013 07:13:42 AM
LT muscle 454 annotations.resources/
-
Aug 02 2013 07:32:09 AM
LT muscle 454.resources/
-
Aug 02 2013 07:31:49 AM
LT muscle de novo.resources/
-
Aug 02 2013 07:34:47 AM
LT RNAseq and DAVID testing.resources/
-
Aug 02 2013 07:32:00 AM
LT SNP discovery.resources/
-
Aug 02 2013 07:30:32 AM
Mani Clams on Ruphi.resources/
-
Aug 02 2013 07:24:37 AM
Manila clam analysis.resources/
-
Aug 02 2013 07:26:35 AM
Manila Clam NGS.resources/
-
Aug 02 2013 07:26:42 AM
Manila clam revigo.resources/
-
Aug 02 2013 07:24:14 AM
Manila Clam RNA-seq DESeq.resources/
-
Aug 02 2013 07:12:16 AM
Manila revigo.resources/
-
Aug 02 2013 07:22:42 AM
Mapping MBD on cg_v0.1.0.resources/
-
Aug 02 2013 07:21:25 AM
Mapping MBD on Scaffold20_5k.resources/
-
Aug 02 2013 07:21:46 AM
MBD Meth fraction - total read comparison (GOslim).resources/
-
Aug 02 2013 07:33:19 AM
MBD Oyster RNA-seq.resources/
-
Aug 02 2013 07:33:39 AM
Methylation Genome Wide Comparison - Dataset stas.resources/
-
Aug 02 2013 07:19:26 AM
Methylation Genome Wide Comparison - miRNA.resources/
-
Aug 02 2013 07:19:36 AM
Methylation Genome Wide Comparison - Pattern Discovery.resources/
-
Aug 02 2013 07:19:38 AM
Methylation Genome Wide Comparison - Sequence Composition.resources/
-
Aug 02 2013 07:19:32 AM
Methylation Genome Wide Comparison - Transcription factors.resources/
-
Aug 02 2013 07:19:39 AM
Methylation Genome Wide Comparison.resources/
-
Aug 02 2013 07:19:44 AM
Modified Blast2gff.resources/
-
Aug 02 2013 07:21:13 AM
More Crosson RNA-seq analysis.resources/
-
Aug 02 2013 07:26:53 AM
More hard clam.resources/
-
Aug 02 2013 07:24:45 AM
More Ruphi Hyper geometrics.resources/
-
Aug 02 2013 07:24:08 AM
MS-AFLP.resources/
-
Aug 02 2013 07:35:59 AM
Multi-species SRA comparison.resources/
-
Aug 02 2013 07:25:21 AM
MV Gene Expression Stats.resources/
-
Aug 02 2013 07:38:05 AM
MV oyster growth stats.resources/
-
Aug 02 2013 07:38:07 AM
Nanotube notes.resources/
-
Aug 02 2013 07:38:22 AM
NCBI BlastNucleotide Sequence (1404 letters) sptlc-1.resources/
-
Aug 02 2013 07:27:31 AM
NCBI SRA- Cgigas RNA-seq.resources/
-
Aug 02 2013 07:08:56 AM
Network Speed.resources/
-
Aug 02 2013 07:33:49 AM
NGS Project Comparison.resources/
-
Aug 02 2013 07:25:10 AM
NOAA sampling draft.resources/
-
Aug 02 2013 07:33:56 AM
Node2 Blast testing - OlyO _ nt.resources/
-
Aug 02 2013 07:16:10 AM
Note on PROPs paper.resources/
-
Aug 02 2013 07:31:45 AM
Notes from Data Visualization using R.resources/
-
Aug 02 2013 07:07:24 AM
Notes on Clam RAD data.resources/
-
Aug 02 2013 07:30:24 AM
Notes on prelim assembly of Oyster genomic "resequence".resources/
-
Aug 02 2013 07:27:03 AM
Notes on Thompson Oyster paper.resources/
-
Aug 02 2013 07:28:28 AM
NSA talk notes.resources/
-
Aug 02 2013 07:20:12 AM
NZ_AFWI01000000 NCBI_NLM_NIH.resources/
-
Aug 02 2013 07:19:53 AM
Oly annotation.resources/
-
Aug 02 2013 07:23:44 AM
Olympia Oyster consensus.resources/
-
Aug 02 2013 07:19:07 AM
OlyO Analysis.resources/
-
Aug 02 2013 07:18:23 AM
OlyO Analysis Blast.resources/
-
Aug 02 2013 07:17:45 AM
OlyO Analysis CpG.resources/
-
Aug 02 2013 07:17:57 AM
OlyO Analysis GO.resources/
-
Aug 02 2013 07:18:13 AM
OlyO Analysis Pattern Discovery.resources/
-
Aug 02 2013 07:17:58 AM
OlyO Analysis Repeat.resources/
-
Aug 02 2013 07:18:02 AM
OlyO Analysis SNP.resources/
-
Aug 02 2013 07:18:04 AM
OlyO Broodstock Data Import.resources/
-
Aug 02 2013 07:14:47 AM
OlyO larvae combined transcriptome.resources/
-
Aug 02 2013 07:15:14 AM
OlyO Microsatellite.resources/
-
Aug 02 2013 07:16:55 AM
OlyO SNP - aachange.resources/
-
Aug 02 2013 07:05:51 AM
OlyO SNP table.resources/
-
Aug 02 2013 07:16:49 AM
OsHV GO.resources/
-
Aug 02 2013 07:21:51 AM
OsHV redux.resources/
-
Aug 02 2013 07:22:27 AM
Oyster 454 contig analysis.resources/
-
Aug 02 2013 07:29:03 AM
Oyster BAC.resources/
-
Aug 02 2013 07:37:39 AM
Oyster field site Water Quality.resources/
-
Aug 02 2013 07:12:13 AM
Oyster fosmid annotation.resources/
-
Aug 02 2013 07:23:24 AM
Oyster HSP Cu notes.resources/
-
Aug 02 2013 07:29:56 AM
Oyster HSP Cu notes v2.resources/
-
Aug 02 2013 07:29:38 AM
Oyster larvae exposed, revisit.resources/
-
Aug 02 2013 07:22:55 AM
Oyster Larvae Size comparisons.resources/
-
Aug 02 2013 07:24:18 AM
Oyster MBD-Seq enrichment.resources/
-
Aug 02 2013 07:27:24 AM
Oyster MBD de novo.resources/
-
Aug 02 2013 07:33:28 AM
Oyster MBD gene specific.resources/
-
Aug 02 2013 07:33:29 AM
Oyster MBD revisited.resources/
-
Aug 02 2013 07:29:31 AM
Oyster MBD revisited again (with v6).resources/
-
Aug 02 2013 07:28:58 AM
Oyster Methylation in silco.resources/
-
Aug 02 2013 07:27:59 AM
oyster PGS2.resources/
-
Aug 02 2013 07:32:14 AM
Oyster SRA genomic data - new release.resources/
-
Aug 02 2013 07:27:11 AM
Pathways.resources/
-
Aug 02 2013 07:38:14 AM
PGS - isoform _ genomic search.resources/
-
Aug 02 2013 07:25:01 AM
PGS expression Tissue Blot.resources/
-
Aug 02 2013 07:32:26 AM
PGS gene expression Vibrio Exposure.resources/
-
Aug 02 2013 07:32:31 AM
PGS Lake trout BS plate.resources/
-
Aug 02 2013 07:34:13 AM
Pinto Ab - Assembly.resources/
-
Aug 02 2013 07:17:56 AM
Pinto Ab- Blast (tabular).resources/
-
Aug 02 2013 07:17:33 AM
Pinto Ab - Blast.resources/
-
Aug 02 2013 07:17:39 AM
Pinto Ab - SP; GO annotation.resources/
-
Aug 02 2013 07:17:33 AM
Pinto Ab Assembly redux 5.1.resources/
-
Aug 02 2013 07:18:41 AM
Pinto Ab Data Analysis.resources/
-
Aug 02 2013 07:19:25 AM
Pinto Ab Microsatellite.resources/
-
Aug 02 2013 07:16:46 AM
Pinto Ab SNP.resources/
-
Aug 02 2013 07:16:41 AM
Pinto Ab SNP supp.resources/
-
Aug 02 2013 07:16:38 AM
Pintos OA Exposure NGS data.resources/
-
Aug 02 2013 07:25:00 AM
Pinto trial.resources/
-
Aug 02 2013 07:24:13 AM
PNW SNP table.resources/
-
Aug 02 2013 07:16:36 AM
PNW Species comparison.resources/
-
Aug 02 2013 07:17:51 AM
PNW Species Ortho.resources/
-
Aug 02 2013 07:16:59 AM
PoC.resources/
-
Aug 02 2013 07:08:57 AM
Prelim Trout lamprey RNAseq.resources/
-
Aug 02 2013 07:35:35 AM
PROPS AJ422120.resources/
-
Aug 02 2013 07:37:18 AM
PROPS AJ582629.resources/
-
Aug 02 2013 07:36:43 AM
PROPS AM855874.resources/
-
Aug 02 2013 07:37:14 AM
PROPS AM857078.resources/
-
Aug 02 2013 07:37:11 AM
PROPS AM857079.resources/
-
Aug 02 2013 07:36:57 AM
PROPS AM904566.resources/
-
Aug 02 2013 07:37:05 AM
PROPS BG467400.resources/
-
Aug 02 2013 07:37:23 AM
PROPS CB617519.resources/
-
Aug 02 2013 07:36:21 AM
PROPS CB617519_1.resources/
-
Aug 02 2013 07:36:38 AM
PROPS CU988730.resources/
-
Aug 02 2013 07:37:00 AM
PROPS CU988734.resources/
-
Aug 02 2013 07:37:35 AM
PROPS CU994646.resources/
-
Aug 02 2013 07:36:15 AM
PROPS CU996464.resources/
-
Aug 02 2013 07:36:52 AM
PROPS ES789598.resources/
-
Aug 02 2013 07:36:50 AM
PROPS EW778389.resources/
-
Aug 02 2013 07:37:29 AM
PROPS FP004705.resources/
-
Aug 02 2013 07:36:09 AM
PROPS FP004879.resources/
-
Aug 02 2013 07:36:36 AM
PROPS FP008495.resources/
-
Aug 02 2013 07:36:30 AM
Protein Analysis -2 Complete Proteome.resources/
-
Aug 02 2013 07:14:11 AM
Protein Analysis - Oyster, OA.resources/
-
Aug 02 2013 07:14:41 AM
Protein Analysis.resources/
-
Aug 02 2013 07:12:50 AM
qDOD - Practical SQL Share snippets.resources/
-
Aug 02 2013 07:05:21 AM
qDOD - Use Scenario - GO info.resources/
-
Aug 02 2013 07:05:15 AM
QPX - Consistency…..resources/
-
Aug 02 2013 07:05:05 AM
QPX GOslim PIES.resources/
-
Aug 02 2013 07:12:00 AM
QPX Revisions.resources/
-
Aug 02 2013 07:05:03 AM
QPX SNPs associated with GO terms.resources/
-
Aug 02 2013 07:12:02 AM
Raid utility error.resources/
-
Aug 02 2013 07:26:54 AM
RBC -RNAseq v4.0.3.resources/
-
Aug 02 2013 07:33:16 AM
RBC RNAseq v4.6.resources/
-
Aug 02 2013 07:33:11 AM
Reminder Blast oyster on cell.resources/
-
Aug 02 2013 07:38:17 AM
Remote blast RepBase TGAGA v032.resources/
-
Aug 02 2013 07:16:23 AM
Removing CLC Database.resources/
-
Aug 02 2013 07:37:50 AM
RepBase - TGAGA v032.resources/
-
Aug 02 2013 07:16:04 AM
Response to Estrogen Stimulus.resources/
-
Aug 02 2013 07:11:20 AM
Running test SNP tables on Vt.resources/
-
Aug 02 2013 07:22:46 AM
RuphiBase files.resources/
-
Aug 02 2013 07:24:40 AM
Ruphi OA Clam qPCR.resources/
-
Aug 02 2013 07:05:17 AM
S1 Hard clam contigs.resources/
-
Aug 02 2013 07:23:34 AM
S2 Immune related gene table.resources/
-
Aug 02 2013 07:23:33 AM
S3 Clam Differentially Expressed Genes (DEGs).resources/
-
Aug 02 2013 07:23:32 AM
S4 Clam genes corresponding to enriched GO terms.resources/
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Aug 02 2013 07:23:31 AM
Science Online 2012 Meeting Notes.resources/
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Seafan Analysis Restarted.resources/
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SeaFan analysis vol4.resources/
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Seafan analysis vol 5.resources/
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Aug 02 2013 07:25:52 AM
Seafan Analysis Vol 6.resources/
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Aug 02 2013 07:24:53 AM
SeaFan cross-species.resources/
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Aug 02 2013 07:17:26 AM
Seafan de novo assembly GO annoations.resources/
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Aug 02 2013 07:34:46 AM
Seafan Enrichment on DESeq geneset.resources/
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Aug 02 2013 07:18:33 AM
SeaFan OrthoDB analysis.resources/
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Seafan RNA-seq.resources/
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SeaFan RNA-Seq analysis #fail.resources/
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Aug 02 2013 07:35:06 AM
Seafan RNA-seq Analysis (follow-up_double check).resources/
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Seafan RNA-seq Analysis workflow.resources/
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Aug 02 2013 07:31:35 AM
Seafan RNA-seq volume 3.resources/
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Aug 02 2013 07:30:40 AM
Seafan RNAseq pre-post visualize (with GO) SPSS.resources/
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Seafan RNAseq with GO (all data).resources/
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Aug 02 2013 07:34:00 AM
SeaFan taxonomic representation analysis.resources/
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Aug 02 2013 07:09:13 AM
Second PGS isoform in oysters.resources/
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Server.resources/
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Aug 02 2013 07:11:56 AM
Server Admin 10.5 Help Removing Updates from a Software Update Server.resources/
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Server problem.resources/
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Server reboot.resources/
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sff-dump.resources/
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Aug 02 2013 07:26:37 AM
Sigenae and the Oyster Genome gene set comparison.resources/
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Aug 02 2013 07:11:15 AM
Sigenae Blastp Emma.resources/
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Sigenae Download.resources/
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Sigenae oyster v8 downloads.resources/
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Aug 02 2013 07:33:46 AM
Sigenae Trout annotation.resources/
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Sigenae Trout data.resources/
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Sigenae Trout SP Annotation.resources/
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Sigenae trout SP annotation with GO.resources/
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Sigenae trout SP annotation with GOslim.resources/
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Skitch note created in Friday Harbor at 410 PM.resources/
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smase oyster.resources/
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Sockeye3.resources/
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Sockeye4.resources/
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Sockeye5.resources/
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Sockeye6.resources/
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sockeye8.resources/
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sockeye9.resources/
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Sockeye BFX (again).resources/
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Sockeye DNMT1.resources/
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Sockeye qPCR.resources/
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Sole primers.resources/
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Sonia gel pics.resources/
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Sptlc1 notes.resources/
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sptlc1 oyster.resources/
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SQLShare Python uploads.resources/
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sratoolkit install _ file extract.resources/
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swupd folder - can I delete it? Apple Support Communities.resources/
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Taxonomic Representations.resources/
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Test entry.resources/
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Testing the Backup.resources/
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TGAGA annotation v0.1.0.resources/
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Aug 02 2013 07:21:23 AM
TGAGA cg_alpha0.3.2 Repeat Masker.resources/
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Aug 02 2013 07:18:39 AM
TGAGA cg_alpha_v0.1.3 BSMAP.resources/
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TGAGA cg_alpha_v0.1.3 Misc Annotations.resources/
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TGAGA cg_alpha_v0.1.3 Read Mapping.resources/
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TGAGA cg_alpha_v0.3.0 Annotation.resources/
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TGAGA cg_alpha_v0.3.0.resources/
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Aug 02 2013 07:20:31 AM
TGAGA cg_alpha_v0.3.2 - MITE, inverted repeats.resources/
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TGAGA cg_alpha_v0.3.2 Annotation.resources/
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Aug 02 2013 07:20:19 AM
TGAGA cg_alpha_v0.3.2 Mapping- 454.resources/
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TGAGA cg_alpha_v0.3.2.resources/
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Aug 02 2013 07:20:27 AM
TGAGA cg_prealpha_v0.0.1.resources/
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TGAGA cg_PREalpha_v0.2.0.resources/
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TGAGA cg_v0.1.2 - BSMAP.resources/
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TGAGA cg_v0.1.2 Annotation CG.resources/
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TGAGA cg_v0.1.2 Annotation Sigenae.resources/
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TGAGA increasing sequence info.resources/
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Aug 02 2013 07:21:06 AM
Thompson qPCR analysis (from scratch).resources/
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Aug 02 2013 07:28:18 AM
TJGR - Capturing Methylation _ AS info for sperm.resources/
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TJGR - CG motifs.resources/
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TJGR - CpG.resources/
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TJGR - MBD on v9_M.resources/
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TJGR - NuPOP.resources/
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TJGR - Oyster Genome (entire) Stats.resources/
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TJGR - Splice Site Prediction.resources/
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TJGR - Tandem Repeats Phobos.resources/
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TJGR - Transcription factors.resources/
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TJGR - Transcription SS Prediction.resources/
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Aug 02 2013 07:12:27 AM
TJGR; Determining CDS specific expression.resources/
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Aug 02 2013 07:07:07 AM
TJGR BSMAP - v.9_M.resources/
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Aug 02 2013 07:12:55 AM
TJGR BSMAP new data (QC).resources/
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TJGR Creating track from Gil MGon RNA-seq reads.resources/
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TJGR Gene GO annoation.resources/
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TJGR GFF Features Summaries.resources/
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TJGR GO slim specific feature tracks.resources/
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TJGR Mapping BS QC on genome v9.resources/
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TJGR Mgo Exon Relative RPKM.resources/
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TJGR Mgo Tophat.resources/
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TJGR PE Gonad BS.resources/
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TJGR Tandem Repeats and TEs.resources/
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TJGR Using gill expression get interval file for MBD Gill.resources/
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TJGR Using gill expression get interval file for MBD Gill_1.resources/
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TJGS - Olympia oyster transcriptome v2.resources/
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TJGS Olurida Soapdenovo.resources/
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TODO Relationship with tissue expression RPKM table 14.resources/
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Trout.resources/
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trout _ lamprey denovo blast.resources/
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UniProtKB Swiss-Prot GOA files.resources/
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Unix Cheat Sheet.resources/
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Untitled snapshot note.resources/
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Untitled snapshot note_1.resources/
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Updating BLAST datbases.resources/
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Uploading additional oyster fosmids to server.resources/
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Uploading Clam data to SRA.resources/
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Uploading Ruphi to SRA.resources/
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Aug 02 2013 07:24:09 AM
v2 Methylation Genome Wide Comparison - Data prep.resources/
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v4.6 MBD RNA-seq.resources/
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Aug 02 2013 07:33:22 AM
Validating GFF.resources/
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Vibrio SNP analysis.resources/
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Vt annotation.resources/
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Vt Assemblies.resources/
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2009 Hansen Salmon Notebook.html
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Abalone (WS-RLO) assembly comparison.html
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Abalone DAVID analysis.html
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Abalone DEG Blasting.html
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Abalone notes.html
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Abalone RNA-seq.html
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Abalone short read analysis.html
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Abalone solid.html
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Abalone solid on PCR targets.html
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A better oyster protein set model.html
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Ab_Assembly Minia.html
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Ab_Assembly SOAP.html
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AltSplice CLC.html
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Artemis Manual.html
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Assembly Oyster "resequences".html
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AY660003 Primer design.html
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Backup of Elene's wiki notebook.html
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Bacto agar recipe.html
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BedTools Manual.html
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Betty BiGO.html
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BFX cell.html
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Bigfish backup.html
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bigfishraid.html
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bigfishRAID full.html
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BiGO- methratio troubleshoot.html
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BiGO - Quality Assessment.html
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BIO533 - Turtle Informatics - Specificit...
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BIO533 - Turtle Virus Informatics.html
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BIO533 Annotating Phage hunt assemblies....
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BIO533 Annotating QPX assembly 21280.html
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BIO533 Annotating SNPs denovo.html
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BIO533 Annotating the QPX Genome (exhaus...
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BIO533 Annotating the QPX Genome.html
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BIO533 Annotating the QPX transcriptome....
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BIO533 Blast QPX transcriptome v2.1 (ORF...
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BIO533 DAVID QPX 2-FOLD DEG (WRONG GENE ...
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BIO533 lab computer trials.html
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BIO533 Mapping RNA-seq on Genome.html
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BIO533 Nonsynon SNP detection Transcript...
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BIO533 Paper follow-ups.html
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BIO533 QPX Annotation options.html
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BIO533 QPX CpG.html
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BIO533 QPX Taxonomic Representation.html
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BIO533 QPX Transcriptome GO Annotation.html
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BIO533 QPX transcriptome v1 against NCBI...
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BIO533 QPX transcriptome v2 against SP.html
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BIO533 QPX value added nonsyn SNP.html
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BIO533 Revisiting RNA-seq QPX.html
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BIO533 Workflow test.html
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Bismark.html
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Bismark on Cg Fosmid Scaffold.html
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Bismark BiGill.html
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Bismark BiGo.html
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BisSNP.html
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Black abalone musings.html
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Blast2GO tests.html
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BLAST ec2 amazon.html
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Blasting mCpG cluster regions.html
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blast instructions.html
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Blast Vibrio consensus.html
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Bleached Coral Assembly.html
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brains.html
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brief MBD mapping on Sigenae 8.html
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BSMAP.html
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BSMAP de novo annotation.html
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BSMAP on cg_v0.1.0.html
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BSMAP Readme.html
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BSMAP v2.html
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BS_Seq on Sigenae 8.html
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Burge Conversation about SeaFan and OsHV...
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Burge Laby Data.html
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Carmel Ab Assembly.html
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Carmel Ab Assembly Annotation.html
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CE methratio troubleshoot.html
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Ceramide metabolism.html
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Ceramide metabolism blast - follow up.html
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Ceramide pathway paper notes.html
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Ceramide pcr analysis.html
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Cg BGI assembly.html
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Cg fosmid Assembly.html
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Cgigas Protein Annotation.html
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Cgigas Proteomics Enrichment.html
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Cgigas tag-seq CLC de novo.html
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Cgigas tag-seq denovo assembly.html
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Cgigas tag-seq Experiment table.html
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Cgigas tag-seq hashing.html
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Cgigas tag-seq novoalign.html
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Cgigas tag-seq novoalign combined.html
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Cgigas tag-seq on Sigenae.html
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Cgigas tag-seq QC report.html
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Cgigas tag-seq Repeat Masker.html
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Cgigas tag-seq RNA-seq for QC visualizat...
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Cgigas Tag Seq.html
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cgigas_alpha_v0.2.0.html
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Cg mitochondria genome.html
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Cg PROPS additional analysis.html
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Cg PROPS more genes.html
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Cg PROPS SNP analysis (separate pops).html
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Cg PROPS SNP analysis common reference.html
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Cg VTG predicted intron junctions.html
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Changing Local Galaxy Server.html
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Checking Clam for Laby Seq.html
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Clam ID genes within Enriched Set.html
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Clam RAD.html
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Clam RAD data.html
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Clam RAD Genetic Diversity.html
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Clam RAD_1.html
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Clam RNA-seq de novo annoation.html
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Clam _ PGS meeting notes.html
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CLC bio Adding Annotations.html
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CLC NGS cell trout.html
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Cluster BootVolume full.html
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Cluster maintenance.html
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Code Comparison PE BS.html
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Coho Vitellogenin assay development.html
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Colony PCR Bisulfite and PGS.html
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Colton Collection Map.html
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Combined Lake Trout (v1) Blast.html
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Combining LT muscle de novo.html
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Comparing RNA-seq metrics.html
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Comparing SeaFan and Nemostella.html
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Comparing v4.6 RNA-seq.html
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Consensus from Burge OsHV.html
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Converting Blast to GFF.html
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Converting UniProt to KEGG.html
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Cookbook for R.html
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Coral BFX.html
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Cornell Data import.html
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Crosson Abalone Analysis.html
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Cufflinks on Galaxy.html
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Custom Databases for BIO533.html
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Data.html
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Daves HSP pcr.html
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DAVID questions.html
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DESeq Gill - MGonad.html
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Determining Coverage for MBD_BS.html
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Digital Normalization.html
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DNMT1 oyster.html
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DNMT1 oyster_1.html
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DNMT3 salmonidae.html
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DNMT3- Sonia.html
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Dowloading oyster SRA data.html
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E2 Recp Genomic Stucture.html
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Elene Meeting notes.html
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Elene NGS Vibrio analysis.html
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Elene Vt annotations (5.1).html
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Emma OA notes.html
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Enterobacteria phage lambda.html
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Estrogen biosynthetic process.html
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Estrogen signalling.html
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Exploring New Swiss-Prot GO annotation w...
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FHL Feeding _ DO Experiment.html
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FISH546 Ichy SNPs.html
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FISH546 Metagenomics.html
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FISH546 Module 1 _ b.html
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FISH546 Module 2.html
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FISH546 Module 3 - de novo assembly.html
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FISH546 Module 4.html
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FISH546_TJGR Module 6 Sperm mCpG counts...
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Fixing MG Bedtools.html
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Function specific tracks for v032.html
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Galaxy workflow.html
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Gavery BS plate.html
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Genomics Gateway.html
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Genomic Structure of Cg Elongation facto...
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GFF (General Feature Format) Specificati...
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GO pivot.html
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Haliotis ESTs.html
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Hansen Sockeye Sample Notes.html
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Hardclam Analysis Revisited.html
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Hard Clam Report Notes.html
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Hard Clam Revisited AGAIN.html
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Hard clam RNA-seq.html
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Hard Clam RNAseq.html
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Hard Clam RNAseq denovo annotation cont....
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Hard drive Failure.html
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Hard Drive Inventory.html
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Harding Coho.html
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HD Failure.html
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Herring BFX.html
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Herring BFX Cell.html
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Herring data manipulation.html
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Herring data SRA.html
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Herring gene ID.html
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Herring Hepatic Transcriptome Annotation...
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Herring SNP.html
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Herring SNP annotations.html
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Herring SNP revisions.html
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Hofman 2008 calcification genes.html
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How to convert BLAST results to GFF - Bi...
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HSF1 and methylation.html
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HSP70 Metzger Paper.html
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HSP70.html
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HSP BS cloning plate.html
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Hsp gel.html
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Hsp gel photo.html
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Hsp PCR # 1.html
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HSP PCR #2.html
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HSP PCR Gel #1.html
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HSP protein and gene STATs.html
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In Depth BLAST.html
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index.html
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Aug 02 2013 07:38:49 AM
Intron structure of H transporter (oyste...
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Ion transporters.html
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iPython notebook testing.html
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Jbrowse.html
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Joins Between Tables - SQL Database Refe...
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Aug 02 2013 07:37:38 AM
Lake Trout libraries.html
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Lake trout muscle RNA-seq.html
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Aug 02 2013 07:33:04 AM
Lake Trout SNP data.html
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Aug 02 2013 07:13:58 AM
Lake Trout v4 assembly.html
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Lake Trout v5 assembly.html
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larvae.html
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Library adaptors.html
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Lifting Coordinates within genome...html
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Local Blast.html
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LT454 denovo annotations continued.html
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LT Enrichment.html
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LT muscle 454 annotations.html
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LT muscle 454.html
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LT muscle de novo.html
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LT RNAseq and DAVID testing.html
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LT SNP discovery.html
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Make +90 Methfile.html
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Mani Clams on Ruphi.html
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Manila clam analysis.html
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Manila Clam NGS.html
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Manila clam revigo.html
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Manila Clam RNA-seq DESeq.html
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Manila revigo.html
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Mapping MBD on cg_v0.1.0.html
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Mapping MBD on Scaffold20_5k.html
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Map RNA-seq on v0.1.0 (CLC plugin).html
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MBD Meth fraction - total read compariso...
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MBD on SRA (genomic).html
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MBD Oyster RNA-seq.html
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Methylation Genome Wide Comparison - Dat...
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Methylation Genome Wide Comparison - miR...
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Methylation Genome Wide Comparison - Pat...
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Methylation Genome Wide Comparison - Seq...
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Methylation Genome Wide Comparison - Tra...
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Methylation Genome Wide Comparison.html
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Methylation Machinery.html
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Milford Stats.html
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Modified Blast2gff.html
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More Crosson RNA-seq analysis.html
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More hard clam.html
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More Ruphi Hyper geometrics.html
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MS-AFLP.html
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Multi-species SRA comparison.html
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MV Data notes.html
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MV Gene Expression Stats.html
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MV notes.html
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MV oyster growth stats.html
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Nanotube notes.html
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Aug 02 2013 07:38:23 AM
NCBI BlastNucleotide Sequence (1404 l...
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NCBI SRA- Cgigas RNA-seq.html
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Network Speed.html
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New Herring annotation.html
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Next step.html
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NGS cell on SRA data.html
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NGS Project Comparison.html
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NOAA sampling draft.html
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Node2 Blast testing - OlyO _ nt.html
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Note on PROPs paper.html
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Notes from Data Visualization using R...
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Notes on Clam RAD data.html
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Notes on prelim assembly of Oyster genom...
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Aug 02 2013 07:27:03 AM
Notes on Thompson Oyster paper.html
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NSA talk notes.html
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NZ_AFWI01000000 NCBI_NLM_NIH.html
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Aug 02 2013 07:19:54 AM
OA oyster data.html
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Olurida Microsats.html
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Oly annotation.html
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Olympia Oyster consensus.html
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Olympia Oyster Transcriptome, ver2.html
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OlyO Analysis.html
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OlyO Analysis Blast.html
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OlyO Analysis CpG.html
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OlyO Analysis CpG Galaxy.html
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OlyO Analysis GO.html
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OlyO Analysis Pattern Discovery.html
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OlyO Analysis Repeat.html
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OlyO Analysis SNP.html
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OlyO Broodstock Data Import.html
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OlyO GOI targeting.html
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OlyO larvae combined transcriptome.html
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OlyO Microsatellite.html
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OlyO SNP - aachange.html
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OlyO SNP table.html
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OsHV GO.html
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OsHV redux.html
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Oyster.html
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Oyster 454 contig analysis.html
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Oyster BAC.html
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Oyster field site Water Quality.html
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Oyster fosmid annotation.html
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Oyster Genome sequences.html
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Oyster HSP Cu notes.html
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Oyster HSP Cu notes v2.html
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Oyster larvae exposed, revisit.html
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Oyster Larvae Size comparisons.html
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Oyster MBD-Seq enrichment.html
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Oyster MBD de novo.html
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Oyster MBD gene specific.html
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Oyster MBD next.html
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Oyster MBD revisited.html
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Oyster MBD revisited again (with v6).html
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Oyster Methylation in silco.html
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oyster PGS2.html
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Oyster SRA genomic data - new release.html
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Pathways.html
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PGS - isoform _ genomic search.html
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PGS expression Tissue Blot.html
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PGS gene expression Vibrio Exposure.html
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PGS Lake trout BS plate.html
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Phobos.html
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Pinto Ab - Assembly.html
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Pinto Ab- Blast (tabular).html
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Pinto Ab - Blast.html
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Pinto Ab - SP; GO annotation.html
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Pinto Ab Assembly redux 5.1.html
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Pinto Ab Data Analysis.html
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Pinto Ab Microsatellite.html
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Pinto Ab SNP.html
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Pinto Ab SNP supp.html
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Pintos OA Exposure NGS data.html
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Pinto trial.html
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PNW SNP table.html
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PNW Species comparison.html
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PNW Species Ortho.html
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Aug 02 2013 07:17:01 AM
PNW Supplemental Files.html
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PoC.html
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Aug 02 2013 07:08:58 AM
Prelim Trout lamprey RNAseq.html
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Aug 02 2013 07:35:35 AM
PROPS AJ422120.html
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PROPS AJ582629.html
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PROPS AM855874.html
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PROPS AM857078.html
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PROPS AM857079.html
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PROPS AM904566.html
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PROPS BG467400.html
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PROPS CB617519.html
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PROPS CB617519_1.html
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PROPS CU988730.html
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PROPS CU988734.html
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PROPS CU994646.html
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PROPS CU996464.html
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PROPS ES789598.html
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PROPS EW778389.html
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PROPS FP004705.html
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PROPS FP004879.html
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PROPS FP008495.html
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PROPS NGS.html
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Protein Analysis -2 Complete Proteome.html
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Protein Analysis - Oyster, OA.html
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Protein Analysis.html
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Aug 02 2013 07:12:50 AM
qDOD - Example SQLShare Queries.html
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Aug 02 2013 07:05:20 AM
qDOD - Practical SQL Share snippets.html
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qDOD - Use Scenario - GO info.html
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QPX - Consistency…..html
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QPX - Making a Genome Browser.html
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QPX GOslim PIES.html
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QPX Revisions.html
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QPX SNPs associated with GO terms.html
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Aug 02 2013 07:12:02 AM
Raid utility error.html
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Aug 02 2013 07:26:54 AM
RBC -RNAseq v4.0.3.html
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RBC de novo.html
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RBC RNAseq v4.6.html
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RBC SRA Data prep.html
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Aug 02 2013 07:38:32 AM
Reminder Blast oyster on cell.html
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Aug 02 2013 07:38:18 AM
Remote blast RepBase TGAGA v032.html
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Removing CLC Database.html
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Aug 02 2013 07:37:51 AM
RepBase - TGAGA v032.html
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Aug 02 2013 07:16:04 AM
Response to Estrogen Stimulus.html
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Running BFX cell on single node.html
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Running test SNP tables on Vt.html
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RuphiBase files.html
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Aug 02 2013 07:24:40 AM
Ruphi OA Clam qPCR.html
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Aug 02 2013 07:05:18 AM
S1 Hard clam contigs.html
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S2 Immune related gene table.html
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S3 Clam Differentially Expressed Genes (...
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S4 Clam genes corresponding to enriched ...
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Aug 02 2013 07:23:32 AM
Salmon dnmt1.html
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Aug 02 2013 07:37:36 AM
Science Online 2012 Day 2.html
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Aug 02 2013 07:23:56 AM
Science Online 2012 Meeting Notes.html
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Aug 02 2013 07:23:57 AM
Seafan Analysis Restarted.html
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SeaFan analysis vol4.html
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Seafan analysis vol 5.html
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Seafan Analysis Vol 6.html
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SeaFan cross-species.html
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Seafan de novo assembly GO annoations.html
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Seafan Enrichment on DESeq geneset.html
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SeaFan OrthoDB analysis.html
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Seafan RNA-seq.html
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SeaFan RNA-Seq analysis #fail.html
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Seafan RNA-seq Analysis (follow-up_doubl...
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Seafan RNA-seq Analysis workflow.html
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Seafan RNA-seq volume 3.html
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Seafan RNAseq pre-post visualize (with G...
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Seafan RNAseq with GO (all data).html
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SeaFan taxonomic representation analy...
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Second PGS isoform in oysters.html
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Server.html
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Aug 02 2013 07:11:57 AM
Server Admin 10.5 Help Removing Updat...
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Server Maintenance.html
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Server problem.html
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Server reboot.html
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sff-dump.html
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Sigenae and the Oyster Genome gene set c...
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Sigenae Blastp Emma.html
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Sigenae Download.html
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Sigenae oyster v8 downloads.html
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Sigenae Trout annotation.html
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Sigenae Trout data.html
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Sigenae Trout SP Annotation.html
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Sigenae trout SP annotation with GO.html
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Sigenae trout SP annotation with GOslim....
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Skitch note created in Friday Harbor at ...
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smase oyster.html
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Sockeye.html
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Sockeye3.html
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Sockeye4.html
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Sockeye5.html
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Sockeye6.html
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Sockeye7.html
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sockeye8.html
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sockeye9.html
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Sockeye BFX (again).html
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Sockeye DNMT1.html
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sockeye dnmt1_DiskStation_Oct-29-0235-20...
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Sockeye galaxy blast.html
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Sockeye qPCR.html
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Sole primers.html
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Sonia gel pics.html
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Sptlc1 notes.html
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sptlc1 oyster.html
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SQLShare Python uploads.html
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SRA toolkit conversion.html
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sratoolkit install _ file extract.html
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swupd folder - can I delete it? Apple...
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Symbolic Link and Dropbox.html
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T-iso.html
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T-iso agar.html
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Taxonomic Representations.html
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Test entry.html
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testing methratio on genefish.html
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Testing Minia for Assembly.html
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Testing the Backup.html
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TGAGA annotation v0.1.0.html
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TGAGA cg_alpha0.3.2 Repeat Masker.html
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TGAGA cg_alpha_v0.1.3 BSMAP.html
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TGAGA cg_alpha_v0.1.3 Misc Annotations.html
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TGAGA cg_alpha_v0.1.3 Read Mapping.html
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TGAGA cg_alpha_v0.1.4.html
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TGAGA cg_alpha_v0.3.0 Annotation.html
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TGAGA cg_alpha_v0.3.0 BSMAP.html
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TGAGA cg_alpha_v0.3.0 software_analysis....
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TGAGA cg_alpha_v0.3.0.html
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TGAGA cg_alpha_v0.3.2 - MITE, inverted r...
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TGAGA cg_alpha_v0.3.2 Annotation.html
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TGAGA cg_alpha_v0.3.2 BSMAP.html
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TGAGA cg_alpha_v0.3.2 Mapping- 454.html
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TGAGA cg_alpha_v0.3.2 Mapping.html
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TGAGA cg_alpha_v0.3.2.html
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TGAGA cg_alpha_v0.4.0.html
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TGAGA cg_prealpha_v0.0.1.html
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TGAGA cg_PREalpha_v0.2.0.html
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TGAGA cg_v0.1.2 - BSMAP.html
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TGAGA cg_v0.1.2 Annotation CG.html
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TGAGA cg_v0.1.2 Annotation Sigenae.html
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TGAGA increasing sequence info.html
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Thompson qPCR analysis (from scratch).html
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TJGR "Promoter" feature track for genome...
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TJGR - Annotating genes.html
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TJGR - Capturing Methylation _ AS info f...
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TJGR - CG motifs.html
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TJGR - CG motifs_1.html
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TJGR - CpG.html
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TJGR - MBD on v9_M.html
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TJGR - NuPOP.html
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TJGR - Oyster Genome (entire) Stats.html
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TJGR - Predicting mC.html
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Aug 02 2013 07:12:44 AM
TJGR - Splice Site Prediction.html
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Aug 02 2013 07:12:23 AM
TJGR - Tandem Repeats Phobos.html
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Aug 02 2013 07:12:21 AM
TJGR - Transcription factors.html
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Aug 02 2013 07:12:20 AM
TJGR - Transcription SS Prediction.html
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Aug 02 2013 07:12:27 AM
TJGR - v9_M Repbase.html
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Aug 02 2013 07:12:44 AM
TJGR; Determining CDS specific expressio...
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Aug 02 2013 07:07:07 AM
TJGR BisSNP.html
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Aug 02 2013 07:10:50 AM
TJGR BSMAP - BAM.html
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Aug 02 2013 07:10:51 AM
TJGR BSMAP - v.9_M.html
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Aug 02 2013 07:12:56 AM
TJGR BSMAP Gill MBD on oyster version9_9...
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Aug 02 2013 07:07:07 AM
TJGR BSMAP new data (QC).html
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Aug 02 2013 07:10:49 AM
TJGR Clusters and closest mRNA.html
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Aug 02 2013 07:07:06 AM
TJGR Creating track from Gil MGon RNA-se...
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Aug 02 2013 07:08:33 AM
TJGR Gene GO annoation.html
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Aug 02 2013 07:12:08 AM
TJGR Genome Comparisons.html
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Aug 02 2013 07:07:26 AM
TJGR GFF Features Summaries.html
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Aug 02 2013 07:12:22 AM
TJGR GO slim specific feature tracks.html
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Aug 02 2013 07:08:37 AM
TJGR Mapping BS QC on genome v9.html
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Aug 02 2013 07:10:43 AM
TJGR mCpG and SNPs.html
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Aug 02 2013 07:07:06 AM
TJGR Mgo Exon Relative RPKM.html
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Aug 02 2013 07:05:35 AM
TJGR Mgo Tophat.html
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Aug 02 2013 07:07:21 AM
TJGR PE Gonad BS.html
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Aug 02 2013 07:08:53 AM
TJGR Pinctada fucata.html
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Aug 02 2013 07:07:25 AM
TJGR RepeatMasker on full genome.html
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Aug 02 2013 07:07:10 AM
TJGR Running BS PE on Lamda.html
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Aug 02 2013 07:07:09 AM
TJGR Running BS PE on Mitochondria.html
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Aug 02 2013 07:07:09 AM
TJGR Tandem Repeats and TEs.html
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Aug 02 2013 07:09:10 AM
TJGR Using gill expression get interval ...
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Aug 02 2013 07:06:49 AM
TJGR Using gill expression get interval ...
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Aug 02 2013 07:07:03 AM
TJGS - Olympia oyster transcriptome v2.html
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Aug 02 2013 07:09:39 AM
TJGS Olurida Soapdenovo.html
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Aug 02 2013 07:09:07 AM
TJGS Olurida transcriptome version 2.2 a...
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Aug 02 2013 07:09:06 AM
TODO Relationship with Number of Exons.html
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Aug 02 2013 07:07:03 AM
TODO Relationship with tissue expression...
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Aug 02 2013 07:07:05 AM
Transition to IPython.html
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Aug 02 2013 07:04:49 AM
Trout.html
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Aug 02 2013 07:35:41 AM
trout _ lamprey denovo blast.html
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Aug 02 2013 07:35:49 AM
UniProtKB Swiss-Prot GOA files.html
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Aug 02 2013 07:12:44 AM
Unix Cheat Sheet.html
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Aug 02 2013 07:38:34 AM
Untitled snapshot note.html
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Aug 02 2013 07:38:20 AM
Untitled snapshot note_1.html
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Aug 02 2013 07:38:22 AM
Updating BLAST datbases.html
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Aug 02 2013 07:31:04 AM
Uploading additional oyster fosmids to s...
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Aug 02 2013 07:23:47 AM
Uploading Clam data to SRA.html
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Aug 02 2013 07:30:00 AM
Uploading Oyster data to SRA.html
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Aug 02 2013 07:29:59 AM
Uploading Ruphi to SRA.html
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Aug 02 2013 07:24:10 AM
v2 Methylation Genome Wide Comparison - ...
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Aug 02 2013 07:19:15 AM
v4.6 MBD RNA-seq.html
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Aug 02 2013 07:33:23 AM
Validating GFF.html
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Aug 02 2013 07:21:09 AM
Velvet on node 4.html
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Aug 02 2013 07:09:08 AM
Vibrio SNP analysis.html
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Aug 02 2013 07:28:27 AM
Vt annotation.html
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Aug 02 2013 07:22:40 AM
Vt Assemblies.html
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Aug 02 2013 07:23:49 AM
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