Directory Listing of /trilobite/notebooks/sam/robertslab.github.io/sams-notebook/posts/2019/

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2019-01-02-Metagenome-Assembly---P.generosa-Water-Sample-HiSeqX-Data-Using-Megahit/2019-01-02-Metagenome-Assembly---P.generosa-Water-Sample-HiSeqX-Data-Using-Megahit/ - Oct 01 2023 12:10:13 AM
2019-01-02-VCF-Splitting---C.virginica-VCF-Using-BCFtools/2019-01-02-VCF-Splitting---C.virginica-VCF-Using-BCFtools/ - Oct 01 2023 12:10:15 AM
2019-01-03-Gene-Prediction---HiSeqX-Metagenomics-from-Geoduck-Water-Using-MetaGeneMark-on-Mox/2019-01-03-Gene-Prediction---HiSeqX-Metagenomics-from-Geoduck-Water-Using-MetaGeneMark-on-Mox/ - Oct 01 2023 12:10:12 AM
2019-01-08-Annotation---Olurida_v081-MAKER-ID-Mapping/2019-01-08-Annotation---Olurida_v081-MAKER-ID-Mapping/ - Oct 01 2023 12:10:11 AM
2019-01-08-Annotation---Olurida_v081-MAKER-Proteins-BLASTp/2019-01-08-Annotation---Olurida_v081-MAKER-Proteins-BLASTp/ - Oct 01 2023 12:10:09 AM
2019-01-08-Annotation---Olurida_v081-MAKER-Proteins-InterProScan5-on-Mox/2019-01-08-Annotation---Olurida_v081-MAKER-Proteins-InterProScan5-on-Mox/ - Oct 01 2023 12:10:10 AM
2019-01-09-Annotation---Olurida_v081-MAKER-Functional-Annotations-on-Mox/2019-01-09-Annotation---Olurida_v081-MAKER-Functional-Annotations-on-Mox/ - Oct 01 2023 12:10:08 AM
2019-01-14-Annotation---Olurida_v081-MAKER-BUSCO-Augustus-Training/2019-01-14-Annotation---Olurida_v081-MAKER-BUSCO-Augustus-Training/ - Oct 01 2023 12:10:06 AM
2019-01-15-Annotation---Geoduck-Genome-with-MAKER-Submitted-to-Mox/2019-01-15-Annotation---Geoduck-Genome-with-MAKER-Submitted-to-Mox/ - Oct 01 2023 12:10:05 AM
2019-01-15-Annotation---Olurida_v081-MAKER-BUSCO-Metazoa-Augustus-Training-on-Mox/2019-01-15-Annotation---Olurida_v081-MAKER-BUSCO-Metazoa-Augustus-Training-on-Mox/ - Oct 01 2023 12:10:04 AM
2019-01-17-DNA-Isolation---C.gigas-Ploidy-Experiment-Ctenidia/2019-01-17-DNA-Isolation---C.gigas-Ploidy-Experiment-Ctenidia/ - Oct 01 2023 12:10:03 AM
2019-01-23-DNA-Isolation-and-Quantification---Ronit's-C.gigas-Ploidy-Ctenidia/2019-01-23-DNA-Isolation-and-Quantification---Ronit's-C.gigas-Ploidy-Ctenidia/ - Oct 01 2023 12:10:02 AM
2019-01-29-Samples-Received---C.virginica-DNA-and-Tissues-from-Lotterhos-Lab/2019-01-29-Samples-Received---C.virginica-DNA-and-Tissues-from-Lotterhos-Lab/ - Oct 01 2023 12:10:01 AM
2019-02-07-Samples-Submitted---Robertos-C.gigas-DNA-for-Whole-Genome-Bisulfite-Sequencing-Genewiz/2019-02-07-Samples-Submitted---Robertos-C.gigas-DNA-for-Whole-Genome-Bisulfite-Sequencing-Genewiz/ - Oct 01 2023 12:09:59 AM
2019-02-11-Sequence-Subsetting---Pgenerosa_v70-Genome-Assembly-with-faidx/2019-02-11-Sequence-Subsetting---Pgenerosa_v70-Genome-Assembly-with-faidx/ - Oct 01 2023 12:09:59 AM
2019-02-13-Genome-Annotation---Pgenerosa_v71-with-MAKER-on-Mox/2019-02-13-Genome-Annotation---Pgenerosa_v71-with-MAKER-on-Mox/ - Oct 01 2023 12:09:58 AM
2019-02-15-Transcriptome-Assembly---Geoduck-Tissue-Specific-Assembly-Ctenidia/2019-02-15-Transcriptome-Assembly---Geoduck-Tissue-Specific-Assembly-Ctenidia/ - Oct 01 2023 12:09:57 AM
2019-02-15-Transcriptome-Assembly---Geoduck-Tissue-Specific-Assembly-Gonad/2019-02-15-Transcriptome-Assembly---Geoduck-Tissue-Specific-Assembly-Gonad/ - Oct 01 2023 12:09:56 AM
2019-02-15-Transcriptome-Assembly---Geoduck-Tissue-Specific-Assembly-Heart/2019-02-15-Transcriptome-Assembly---Geoduck-Tissue-Specific-Assembly-Heart/ - Oct 01 2023 12:09:55 AM
2019-02-15-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Juvenile/2019-02-15-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Juvenile/ - Oct 01 2023 12:09:54 AM
2019-02-21-Data-Management---Create-C.gigas-Bisulfite-Genome-with-Bismark-on-Mox/2019-02-21-Data-Management---Create-C.gigas-Bisulfite-Genome-with-Bismark-on-Mox/ - Oct 01 2023 12:09:52 AM
2019-02-21-Data-Management---Create-C.virginica-Bisulfite-Genome-wit-Bismark-on-Mox/2019-02-21-Data-Management---Create-C.virginica-Bisulfite-Genome-wit-Bismark-on-Mox/ - Oct 01 2023 12:09:51 AM
2019-02-21-Data-Management---Create-C.virginica-Bisulfite-Genome-with-Bismark-on-Mox/2019-02-21-Data-Management---Create-C.virginica-Bisulfite-Genome-with-Bismark-on-Mox/ - Nov 03 2024 12:11:47 AM
2019-02-21-Data-Management---Create-Geoduck-Bisulfite-Genomes-with-Bismark-on-Mox/2019-02-21-Data-Management---Create-Geoduck-Bisulfite-Genomes-with-Bismark-on-Mox/ - Oct 01 2023 12:09:53 AM
2019-02-22-Methylation-Analysis---C.gigas-Bismark-on-Mox/2019-02-22-Methylation-Analysis---C.gigas-Bismark-on-Mox/ - Oct 01 2023 12:09:50 AM
2019-02-22-Methylation-Analysis---C.virginica/2019-02-22-Methylation-Analysis---C.virginica/ - Oct 01 2023 12:09:49 AM
2019-02-22-Methylation-Analysis---O.lurida-Bismark-on-Mox/2019-02-22-Methylation-Analysis---O.lurida-Bismark-on-Mox/ - Oct 01 2023 12:09:47 AM
2019-02-22-Methylation-Analysis---P.generosa-Bismark-on-Mox/2019-02-22-Methylation-Analysis---P.generosa-Bismark-on-Mox/ - Oct 01 2023 12:09:47 AM
2019-02-26-Data-Wrangling---CpG-OE-Calculations-on-C.virginica-Genes/2019-02-26-Data-Wrangling---CpG-OE-Calculations-on-C.virginica-Genes/ - Oct 01 2023 12:09:46 AM
2019-02-28-Genome-Annotation---Pgenerosa_v070-MAKER-on-Mox/2019-02-28-Genome-Annotation---Pgenerosa_v070-MAKER-on-Mox/ - Oct 01 2023 12:09:45 AM
2019-03-02-Genome-Assessment---BUSCO-Metazoa-on-P.generosa-v071-on-Mox/2019-03-02-Genome-Assessment---BUSCO-Metazoa-on-P.generosa-v071-on-Mox/ - Oct 01 2023 12:09:44 AM
2019-03-04-Data-Management---Data-Migration-and-Drive-Expansion-on-Gannet/2019-03-04-Data-Management---Data-Migration-and-Drive-Expansion-on-Gannet/ - Oct 01 2023 12:09:43 AM
2019-03-05-Agarose-Gel---Lotterhos-C.virginica-Mantle-DNA-from-20181114/2019-03-05-Agarose-Gel---Lotterhos-C.virginica-Mantle-DNA-from-20181114/ - Oct 01 2023 12:09:42 AM
2019-03-06-DNA-Shearing-and-Bioanalyzer--Lotterhos-C.virginica-Mantle-gDNA-from-2018114/2019-03-06-DNA-Shearing-and-Bioanalyzer--Lotterhos-C.virginica-Mantle-gDNA-from-2018114/ - Oct 01 2023 12:09:41 AM
2019-03-07-MBD-Enrichment---C.virginica-Sheared-Mantle-DNA-from-20190306/2019-03-07-MBD-Enrichment---C.virginica-Sheared-Mantle-DNA-from-20190306/ - Oct 01 2023 12:09:40 AM
2019-03-11-MBD-Enrichment---C.virginica-Sheared-Mantle-DNA-from-20190306/2019-03-11-MBD-Enrichment---C.virginica-Sheared-Mantle-DNA-from-20190306/ - Oct 01 2023 12:09:38 AM
2019-03-12-Data-Management---Create-C.virginica-Bisulfite-Genome-with-Bismark-on-Mox/2019-03-12-Data-Management---Create-C.virginica-Bisulfite-Genome-with-Bismark-on-Mox/ - Oct 01 2023 12:09:36 AM
2019-03-12-MBD-Enrichment---Ethanol-Precipitation-of-C.virginica-MBD-samples/2019-03-12-MBD-Enrichment---Ethanol-Precipitation-of-C.virginica-MBD-samples/ - Oct 01 2023 12:09:37 AM
2019-03-13-Methylation-Analysis---C.virginica-Gonad-MBD-with-Varying-Read-Subsets-with-Bismark-on-Mox/2019-03-13-Methylation-Analysis---C.virginica-Gonad-MBD-with-Varying-Read-Subsets-with-Bismark-on-Mox/ - Oct 01 2023 12:09:35 AM
2019-03-18-Transcriptome-Annotation---Geoduck-Ctenidia-with-BLASTx-on-Mox/2019-03-18-Transcriptome-Annotation---Geoduck-Ctenidia-with-BLASTx-on-Mox/ - Oct 01 2023 12:09:28 AM
2019-03-18-Transcriptome-Annotation---Geoduck-Ctenidia-with-Transdecoder-on-Mox/2019-03-18-Transcriptome-Annotation---Geoduck-Ctenidia-with-Transdecoder-on-Mox/ - Oct 01 2023 12:09:33 AM
2019-03-18-Transcriptome-Annotation---Geoduck-Ctenidia-with-Trinotate-on-Mox/2019-03-18-Transcriptome-Annotation---Geoduck-Ctenidia-with-Trinotate-on-Mox/ - Oct 01 2023 12:09:24 AM
2019-03-18-Transcriptome-Annotation---Geoduck-Gonad-with-BLASTx-on-Mox/2019-03-18-Transcriptome-Annotation---Geoduck-Gonad-with-BLASTx-on-Mox/ - Oct 01 2023 12:09:27 AM
2019-03-18-Transcriptome-Annotation---Geoduck-Gonad-with-Transdecoder-on-Mox/2019-03-18-Transcriptome-Annotation---Geoduck-Gonad-with-Transdecoder-on-Mox/ - Oct 01 2023 12:09:32 AM
2019-03-18-Transcriptome-Annotation---Geoduck-Gonad-with-Trinotate-on-Mox/2019-03-18-Transcriptome-Annotation---Geoduck-Gonad-with-Trinotate-on-Mox/ - Oct 01 2023 12:09:25 AM
2019-03-18-Transcriptome-Annotation---Geoduck-Heart-with-BLASTx-on-Mox/2019-03-18-Transcriptome-Annotation---Geoduck-Heart-with-BLASTx-on-Mox/ - Oct 01 2023 12:09:26 AM
2019-03-18-Transcriptome-Annotation---Geoduck-Heart-with-Transdecoder-on-Mox/2019-03-18-Transcriptome-Annotation---Geoduck-Heart-with-Transdecoder-on-Mox/ - Oct 01 2023 12:09:31 AM
2019-03-18-Transcriptome-Annotation---Geoduck-Heart-with-Trinotate-on-Mox/2019-03-18-Transcriptome-Annotation---Geoduck-Heart-with-Trinotate-on-Mox/ - Oct 01 2023 12:09:23 AM
2019-03-18-Transcriptome-Annotation---Geoduck-Juvenile-Day-5-with-BLASTx-on-Mox/2019-03-18-Transcriptome-Annotation---Geoduck-Juvenile-Day-5-with-BLASTx-on-Mox/ - Oct 01 2023 12:09:29 AM
2019-03-18-Transcriptome-Annotation---Geoduck-Juvenile-Day-5-with-Transdecoder-on-Mox/2019-03-18-Transcriptome-Annotation---Geoduck-Juvenile-Day-5-with-Transdecoder-on-Mox/ - Oct 01 2023 12:09:30 AM
2019-03-18-Transcriptome-Annotation---Geoduck-Juvenile-Day-5-with-Trinotate-on-Mox/2019-03-18-Transcriptome-Annotation---Geoduck-Juvenile-Day-5-with-Trinotate-on-Mox/ - Oct 01 2023 12:09:22 AM
2019-03-19-MBD-Enrichment---DNA-Quantification-of-C.virginica-MBD-Samples-from-20190312/2019-03-19-MBD-Enrichment---DNA-Quantification-of-C.virginica-MBD-Samples-from-20190312/ - Oct 01 2023 12:09:21 AM
2019-03-25-Metagenomics---Taxonomic-Diversity-from-Geoduck-Water-with-BLASTn-and-Krona-Plots/2019-03-25-Metagenomics---Taxonomic-Diversity-from-Geoduck-Water-with-BLASTn-and-Krona-Plots/ - Oct 01 2023 12:09:19 AM
2019-03-25-Metagenomics---Taxonomic-Diversity-from-Geoduck-Water-with-BLASTp-and-Krona-plots/2019-03-25-Metagenomics---Taxonomic-Diversity-from-Geoduck-Water-with-BLASTp-and-Krona-plots/ - Oct 01 2023 12:09:20 AM
2019-03-26-Data-Management---SRA-Submission-Panopea-generosa-Day-5-Larvae-RNAseq/2019-03-26-Data-Management---SRA-Submission-Panopea-generosa-Day-5-Larvae-RNAseq/ - Oct 01 2023 12:09:18 AM
2019-03-26-Sample-Submission---Lotterhos-C.virginica-Mantle-MBD-DNA-to-ZymoResearch-for-BSseq/2019-03-26-Sample-Submission---Lotterhos-C.virginica-Mantle-MBD-DNA-to-ZymoResearch-for-BSseq/ - Oct 01 2023 12:09:17 AM
2019-03-27-Metagenome-Assemblies---P.generosa-Water-Samples-Trimmed-HiSeqX-Data-Using-Megahit-on-Mox/2019-03-27-Metagenome-Assemblies---P.generosa-Water-Samples-Trimmed-HiSeqX-Data-Using-Megahit-on-Mox/ - Oct 01 2023 12:09:16 AM
2019-03-27-Transposable-Element-Mapping---Crassostrea-gigas-Genome-v9-Using-RepeatMasker-4.07-on-Roadrunner/2019-03-27-Transposable-Element-Mapping---Crassostrea-gigas-Genome-v9-Using-RepeatMasker-4.07-on-Roadrunner/ - Oct 01 2023 12:09:16 AM
2019-04-01-Metagenomics---Taxonomic-Diversity-Comparisons-from-Geoduck-Water-with-Anvio-on-Mox/2019-04-01-Metagenomics---Taxonomic-Diversity-Comparisons-from-Geoduck-Water-with-Anvio-on-Mox/ - Oct 01 2023 12:09:15 AM
2019-04-03-Metagenomics---Geoduck-Water-Sample-Assembly-Comparisons-with-MetaQuast/2019-04-03-Metagenomics---Geoduck-Water-Sample-Assembly-Comparisons-with-MetaQuast/ - Oct 01 2023 12:09:13 AM
2019-04-08-Data-Management---Whole-Genome-Bisulfite-Sequencing-Data-from-Genewiz-Received/2019-04-08-Data-Management---Whole-Genome-Bisulfite-Sequencing-Data-from-Genewiz-Received/ - Oct 01 2023 12:09:11 AM
2019-04-08-Metagenomics---P.generosa-Water-Sample-Assembly-Comparisons-with-Quast/2019-04-08-Metagenomics---P.generosa-Water-Sample-Assembly-Comparisons-with-Quast/ - Oct 01 2023 12:09:12 AM
2019-04-09-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Ctenidia-with-HiSeq-and-NovaSeq-Data-on-Mox/2019-04-09-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Ctenidia-with-HiSeq-and-NovaSeq-Data-on-Mox/ - Oct 01 2023 12:09:09 AM
2019-04-09-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Gonad-HiSeq-and-NovaSeq-Data-on-Mox/2019-04-09-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Gonad-HiSeq-and-NovaSeq-Data-on-Mox/ - Oct 01 2023 12:09:05 AM
2019-04-09-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Juvenile-Ambient-OA-EPI123-with-HiSeq-Data-on-Mox/2019-04-09-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Juvenile-Ambient-OA-EPI123-with-HiSeq-Data-on-Mox/ - Oct 01 2023 12:09:07 AM
2019-04-09-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Juvenile-Ambient-OA-EPI124-with-HiSeq-and-NovaSeq-Data-on-Mox/2019-04-09-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Juvenile-Ambient-OA-EPI124-with-HiSeq-and-NovaSeq-Data-on-Mox/ - Oct 01 2023 12:09:06 AM
2019-04-09-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Juvenile-Super-Low-OA-EPI115-with-HiSeq-Data-on-Mox/2019-04-09-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Juvenile-Super-Low-OA-EPI115-with-HiSeq-Data-on-Mox/ - Oct 01 2023 12:09:08 AM
2019-04-09-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Juvenile-Super-Low-OA-EPI116-with-HiSeq-Data-on-Mox/2019-04-09-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Juvenile-Super-Low-OA-EPI116-with-HiSeq-Data-on-Mox/ - Oct 01 2023 12:09:07 AM
2019-04-09-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Larvae-Day5-EPI99-with-HiSeq-and-NovaSeq-Data-on-Mox/2019-04-09-Transcriptome-Assembly---Geoduck-Tissue-specific-Assembly-Larvae-Day5-EPI99-with-HiSeq-and-NovaSeq-Data-on-Mox/ - Oct 01 2023 12:09:04 AM
2019-04-11-RNA-Isolation-and-Quantification---Crab-Hemolypmh-Using-Quick-DNA-RNA-Microprep-Plus-Kit/2019-04-11-RNA-Isolation-and-Quantification---Crab-Hemolypmh-Using-Quick-DNA-RNA-Microprep-Plus-Kit/ - Oct 01 2023 12:09:03 AM
2019-04-15-FastQC---WGBS-Sequencing-Data-from-Genewiz-Received-20190408/2019-04-15-FastQC---WGBS-Sequencing-Data-from-Genewiz-Received-20190408/ - Oct 01 2023 12:09:00 AM
2019-04-15-Metagenome-Assemblies---P.generosa-Water-Samples-Trimmed-HiSeqX-Data-Using-Megahit-on-Mox-to-Compare-pH-Treatments/2019-04-15-Metagenome-Assemblies---P.generosa-Water-Samples-Trimmed-HiSeqX-Data-Using-Megahit-on-Mox-to-Compare-pH-Treatments/ - Oct 01 2023 12:09:02 AM
2019-04-16-Metagenomics-Annotation---P.generosa-Water-Samples-Using-BLASTn-on-Mox-and-KronaTools-Visualization-to-Compare-pH-Treatments/2019-04-16-Metagenomics-Annotation---P.generosa-Water-Samples-Using-BLASTn-on-Mox-and-KronaTools-Visualization-to-Compare-pH-Treatments/ - Oct 01 2023 12:08:59 AM
2019-04-16-Metagenomics-Gene-Prediction---P.generosa-Water-Samples-Using-MetaGeneMark-on-Mox-to-Compare-pH-Treatments/2019-04-16-Metagenomics-Gene-Prediction---P.generosa-Water-Samples-Using-MetaGeneMark-on-Mox-to-Compare-pH-Treatments/ - Oct 01 2023 12:09:00 AM
2019-04-18-Data-Analysis---C.virginica-MBD-Sequencing-Coverage/2019-04-18-Data-Analysis---C.virginica-MBD-Sequencing-Coverage/ - Oct 01 2023 12:08:57 AM
2019-04-24-SRA-Submission---P.generosa-10x-Genomics-Sequencing-Data/2019-04-24-SRA-Submission---P.generosa-10x-Genomics-Sequencing-Data/ - Oct 01 2023 12:08:57 AM
2019-04-30-RNA-Isolation-and-Quantification---C.bairdi-Hemolymph-Pellet-in-RNAlater/2019-04-30-RNA-Isolation-and-Quantification---C.bairdi-Hemolymph-Pellet-in-RNAlater/ - Oct 01 2023 12:08:55 AM
2019-05-01-Data-Received---Additional-C.gigas-Whole-Genome-Bisulfite-Sequencing-Data-from-Genewiz/2019-05-01-Data-Received---Additional-C.gigas-Whole-Genome-Bisulfite-Sequencing-Data-from-Genewiz/ - Oct 01 2023 12:08:54 AM
2019-05-01-FastQC-MultiQC---Additional-C.gigas-WGBS-Sequencing-Data-from-Genewiz-Received-20190501/2019-05-01-FastQC-MultiQC---Additional-C.gigas-WGBS-Sequencing-Data-from-Genewiz-Received-20190501/ - Oct 01 2023 12:08:54 AM
2019-05-14-Library-Decisions---C.bairdi-RNAs-for-Library-Pools/2019-05-14-Library-Decisions---C.bairdi-RNAs-for-Library-Pools/ - Oct 01 2023 12:08:52 AM
2019-05-16-Metagenomics---BLASTx-of-Individual-Water-Sample-MEGAHIT-Assemblies-on-Mox/2019-05-16-Metagenomics---BLASTx-of-Individual-Water-Sample-MEGAHIT-Assemblies-on-Mox/ - Oct 01 2023 12:08:51 AM
2019-05-21-Sample-Submission---Tanner-Crab-Infected-vs-Uninfected-RNAseq/2019-05-21-Sample-Submission---Tanner-Crab-Infected-vs-Uninfected-RNAseq/ - Oct 01 2023 12:08:49 AM
2019-05-23-Data-Wrangling---Create-Pgenerosa_v070-GFFs/2019-05-23-Data-Wrangling---Create-Pgenerosa_v070-GFFs/ - Oct 01 2023 12:08:49 AM
2019-06-12-Metagenomics---Taxonomic-Diversity-and-Sequencing-Coverage-with-MEGAHIT-BLASTx-and-Krona-Plots/2019-06-12-Metagenomics---Taxonomic-Diversity-and-Sequencing-Coverage-with-MEGAHIT-BLASTx-and-Krona-Plots/ - Oct 01 2023 12:08:48 AM
2019-06-19-Metagenomics---Refining-Anvio-Binning/2019-06-19-Metagenomics---Refining-Anvio-Binning/ - Oct 01 2023 12:08:46 AM
2019-06-25-Data-Wrangling---FastA-Subsetting-of-Pgenerosa_v070.fa-Using-samtools-faidx/2019-06-25-Data-Wrangling---FastA-Subsetting-of-Pgenerosa_v070.fa-Using-samtools-faidx/ - Oct 01 2023 12:08:44 AM
2019-06-25-Genome-Annotation---O.lurida-(v081)-Hisat2-Transcript-Isoforms-Index/2019-06-25-Genome-Annotation---O.lurida-(v081)-Hisat2-Transcript-Isoforms-Index/ - Oct 01 2023 12:08:46 AM
2019-06-25-Genome-Annotation---O.lurida-(v081)-Transcript-Isoform-ID-with-Stringtie-on-Mox/2019-06-25-Genome-Annotation---O.lurida-(v081)-Transcript-Isoform-ID-with-Stringtie-on-Mox/ - Oct 01 2023 12:08:45 AM
2019-06-26-Data-Received---C.virginica-Mantle-MBD-BSseq-from-ZymoResearch/2019-06-26-Data-Received---C.virginica-Mantle-MBD-BSseq-from-ZymoResearch/ - Oct 01 2023 12:08:43 AM
2019-06-26-RepeatMasker---Pgenerosa_v074-for-Transposable-Element-ID-on-Roadrunner/2019-06-26-RepeatMasker---Pgenerosa_v074-for-Transposable-Element-ID-on-Roadrunner/ - Oct 01 2023 12:08:42 AM
2019-06-26-RepeatModeler---Pgenerosa_v074-for-MAKER-Annotation-on-Emu/2019-06-26-RepeatModeler---Pgenerosa_v074-for-MAKER-Annotation-on-Emu/ - Oct 01 2023 12:08:41 AM
2019-06-27-Transcriptome-Annotation---Geoduck-Ctenidia-with-Transdecoder-on-Mox/2019-06-27-Transcriptome-Annotation---Geoduck-Ctenidia-with-Transdecoder-on-Mox/ - Oct 01 2023 12:08:39 AM
2019-06-27-Transcriptome-Annotation---Geoduck-Gonad-with-Transdecoder-on-Mox/2019-06-27-Transcriptome-Annotation---Geoduck-Gonad-with-Transdecoder-on-Mox/ - Oct 01 2023 12:08:36 AM
2019-06-27-Transcriptome-Annotation---Geoduck-Juvenile-Ambient-OA-EPI123-with-Transdecoder-on-Mox/2019-06-27-Transcriptome-Annotation---Geoduck-Juvenile-Ambient-OA-EPI123-with-Transdecoder-on-Mox/ - Oct 01 2023 12:08:32 AM
2019-06-27-Transcriptome-Annotation---Geoduck-Juvenile-Ambient-OA-EPI124-with-Transdecoder-on-Mox/2019-06-27-Transcriptome-Annotation---Geoduck-Juvenile-Ambient-OA-EPI124-with-Transdecoder-on-Mox/ - Oct 01 2023 12:08:37 AM
2019-06-27-Transcriptome-Annotation---Geoduck-Juvenile-Super-Low-OA-EPI115-with-Transdecoder-on-Mox/2019-06-27-Transcriptome-Annotation---Geoduck-Juvenile-Super-Low-OA-EPI115-with-Transdecoder-on-Mox/ - Oct 01 2023 12:08:34 AM
2019-06-27-Transcriptome-Annotation---Geoduck-Juvenile-Super-Low-OA-EPI116-with-Transdecoder-on-Mox/2019-06-27-Transcriptome-Annotation---Geoduck-Juvenile-Super-Low-OA-EPI116-with-Transdecoder-on-Mox/ - Oct 01 2023 12:08:40 AM
2019-06-27-Transcriptome-Annotation---Geoduck-Larvae-Day5-EPI99-with-Transdecoder-on-Mox/2019-06-27-Transcriptome-Annotation---Geoduck-Larvae-Day5-EPI99-with-Transdecoder-on-Mox/ - Oct 01 2023 12:08:34 AM
2019-07-01-Genome-Annotation---Pgenerosa_v074-MAKER-on-Mox/2019-07-01-Genome-Annotation---Pgenerosa_v074-MAKER-on-Mox/ - Oct 01 2023 12:08:32 AM
2019-07-09-Genome-Annotation---Olurida_v081-with-MAKER-and-Tissue-specific-Transcriptomes-on-Mox/2019-07-09-Genome-Annotation---Olurida_v081-with-MAKER-and-Tissue-specific-Transcriptomes-on-Mox/ - Oct 01 2023 12:08:31 AM
2019-07-10-Genome-Annotation---Pgenerosa_v071-Using-GenSAS/2019-07-10-Genome-Annotation---Pgenerosa_v071-Using-GenSAS/ - Oct 01 2023 12:08:29 AM
2019-07-10-Genome-Annotation---Pgenerosa_v074-Using-GenSAS/2019-07-10-Genome-Annotation---Pgenerosa_v074-Using-GenSAS/ - Oct 01 2023 12:08:30 AM
2019-07-10-Genome-Assessment---BUSCO-Metazoa-on-Pgenerosa_v070-on-Mox/2019-07-10-Genome-Assessment---BUSCO-Metazoa-on-Pgenerosa_v070-on-Mox/ - Oct 01 2023 12:08:28 AM
2019-07-10-Genome-Assessment---BUSCO-Metazoa-on-Pgenerosa_v074-on-Mox/2019-07-10-Genome-Assessment---BUSCO-Metazoa-on-Pgenerosa_v074-on-Mox/ - Oct 01 2023 12:08:27 AM
2019-07-16-Genome-Annotation---O.lurida-20190709-v081-Hisat2-Transcript-Isoform-Index/2019-07-16-Genome-Annotation---O.lurida-20190709-v081-Hisat2-Transcript-Isoform-Index/ - Oct 01 2023 12:08:25 AM
2019-07-16-Genome-Annotation---O.lurida-20190709-v081-Transcript-Isoform-ID-with-Stringtie-on-Mox/2019-07-16-Genome-Annotation---O.lurida-20190709-v081-Transcript-Isoform-ID-with-Stringtie-on-Mox/ - Oct 01 2023 12:08:24 AM
2019-07-22-Genome-Annotation---Pgenerosa_v070-and-v074-Top-18-Scaffolds-Feature-Count-Comparisons/2019-07-22-Genome-Annotation---Pgenerosa_v070-and-v074-Top-18-Scaffolds-Feature-Count-Comparisons/ - Oct 01 2023 12:08:24 AM
2019-07-23-Genome-Annotation---Pgenerosa_v070-Hisat2-Transcript-Isoform-Index/2019-07-23-Genome-Annotation---Pgenerosa_v070-Hisat2-Transcript-Isoform-Index/ - Oct 01 2023 12:08:22 AM
2019-07-23-Genome-Annotation---Pgenerosa_v070-Transcript-Isoform-ID-with-Stringtie-on-Mox/2019-07-23-Genome-Annotation---Pgenerosa_v070-Transcript-Isoform-ID-with-Stringtie-on-Mox/ - Oct 01 2023 12:08:20 AM
2019-07-23-Genome-Annotation---Pgenerosa_v074-Hisat2-Transcript-Isoform-Index/2019-07-23-Genome-Annotation---Pgenerosa_v074-Hisat2-Transcript-Isoform-Index/ - Oct 01 2023 12:08:21 AM
2019-07-23-Genome-Annotation---Pgenerosa_v074-Transcript-Isoform-ID-with-Stringtie-on-Mox/2019-07-23-Genome-Annotation---Pgenerosa_v074-Transcript-Isoform-ID-with-Stringtie-on-Mox/ - Oct 01 2023 12:08:18 AM
2019-07-29-Data-Summary---P.generosa-Transcriptome-Assemblies-Stats/2019-07-29-Data-Summary---P.generosa-Transcriptome-Assemblies-Stats/ - Oct 01 2023 12:08:16 AM
2019-07-29-Transcriptome-Compression---P.generosa-Transcriptome-Assemblies-Using-CD-Hit-est-on-Mox/2019-07-29-Transcriptome-Compression---P.generosa-Transcriptome-Assemblies-Using-CD-Hit-est-on-Mox/ - Oct 01 2023 12:08:17 AM
2019-07-31-Data-Wrangling---FastA-Splitting-With-faSplit/2019-07-31-Data-Wrangling---FastA-Splitting-With-faSplit/ - Oct 01 2023 12:08:15 AM
2019-08-06-Genome-Comparison---Pgenerosa_v074-vs-C.virginica-NCBI-with-MUMmer-on-Mox/2019-08-06-Genome-Comparison---Pgenerosa_v074-vs-C.virginica-NCBI-with-MUMmer-on-Mox/ - Oct 01 2023 12:08:13 AM
2019-08-06-RepeatMasker---Pgenerosa_v070-for-Transposable-Element-ID-on-Roadrunner/2019-08-06-RepeatMasker---Pgenerosa_v070-for-Transposable-Element-ID-on-Roadrunner/ - Oct 01 2023 12:08:14 AM
2019-08-07-Genome-Comparison---Pgenerosa_v074-vs-C.gigas-NCBI-with-MUMmer-on-Mox/2019-08-07-Genome-Comparison---Pgenerosa_v074-vs-C.gigas-NCBI-with-MUMmer-on-Mox/ - Oct 01 2023 12:08:11 AM
2019-08-07-Genome-Comparison---Pgenerosa_v074-vs-H.sapiens-NCBI-with-MUMmer-on-Mox/2019-08-07-Genome-Comparison---Pgenerosa_v074-vs-H.sapiens-NCBI-with-MUMmer-on-Mox/ - Oct 01 2023 12:08:12 AM
2019-08-07-Genome-Comparison---Pgenerosa_v074-vs-M.yessoensis-NCBI-with-MUMmer-on-Mox/2019-08-07-Genome-Comparison---Pgenerosa_v074-vs-M.yessoensis-NCBI-with-MUMmer-on-Mox/ - Oct 01 2023 12:08:10 AM
2019-08-07-Genome-Comparison---Pgenerosa_v074-vs-Pgenerosa_v070-with-MUMmer-on-Mox/2019-08-07-Genome-Comparison---Pgenerosa_v074-vs-Pgenerosa_v070-with-MUMmer-on-Mox/ - Oct 01 2023 12:08:07 AM
2019-08-07-Genome-Comparison---Pgenerosa_v074-vs-Pgenerosa_v074-with-MUMmer-on-Mox/2019-08-07-Genome-Comparison---Pgenerosa_v074-vs-Pgenerosa_v074-with-MUMmer-on-Mox/ - Oct 01 2023 12:08:08 AM
2019-08-07-Genome-Comparison---Pgenerosa_v074-vs-S.glomerata-NCBI-with-MUMmer-on-Mox/2019-08-07-Genome-Comparison---Pgenerosa_v074-vs-S.glomerata-NCBI-with-MUMmer-on-Mox/ - Oct 01 2023 12:08:09 AM
2019-08-13-Genome-Comparison---Pgenerosa_v074-vs-C.gigas-NCBI-with-MUMmer-Promer-on-Mox/2019-08-13-Genome-Comparison---Pgenerosa_v074-vs-C.gigas-NCBI-with-MUMmer-Promer-on-Mox/ - Oct 01 2023 12:08:05 AM
2019-08-13-Genome-Comparison---Pgenerosa_v074-vs-C.virginica-NCBI-with-MUMmer-Promer-on-Mox/2019-08-13-Genome-Comparison---Pgenerosa_v074-vs-C.virginica-NCBI-with-MUMmer-Promer-on-Mox/ - Oct 01 2023 12:08:04 AM
2019-08-13-Genome-Comparison---Pgenerosa_v074-vs-H.sapiens-NCBI-with-MUMmer-Promer-on-Mox/2019-08-13-Genome-Comparison---Pgenerosa_v074-vs-H.sapiens-NCBI-with-MUMmer-Promer-on-Mox/ - Oct 01 2023 12:08:03 AM
2019-08-13-Genome-Comparison---Pgenerosa_v074-vs-M.yessoensis-NCBI-with-MUMmer-Promer-on-Mox/2019-08-13-Genome-Comparison---Pgenerosa_v074-vs-M.yessoensis-NCBI-with-MUMmer-Promer-on-Mox/ - Oct 01 2023 12:08:02 AM
2019-08-13-Genome-Comparison---Pgenerosa_v074-vs-Pgenerosa_v070-with-MUMmer-Promer-on-Mox/2019-08-13-Genome-Comparison---Pgenerosa_v074-vs-Pgenerosa_v070-with-MUMmer-Promer-on-Mox/ - Oct 01 2023 12:07:59 AM
2019-08-13-Genome-Comparison---Pgenerosa_v074-vs-S.glomerata-NCBI-with-MUMmer-Promer-on-Mox/2019-08-13-Genome-Comparison---Pgenerosa_v074-vs-S.glomerata-NCBI-with-MUMmer-Promer-on-Mox/ - Oct 01 2023 12:08:00 AM
2019-08-19-Genome-Annotation---Pgenerosa_v074-MAKER-on-Mox-with-Stringtie-Transcripts-GFF/2019-08-19-Genome-Annotation---Pgenerosa_v074-MAKER-on-Mox-with-Stringtie-Transcripts-GFF/ - Oct 01 2023 12:07:58 AM
2019-08-21-Data-Wrangling---Create-a-CpG-GFF-from-Pgenerosa_v074-using-EMBOSS-fuzznuc-on-Swoose/2019-08-21-Data-Wrangling---Create-a-CpG-GFF-from-Pgenerosa_v074-using-EMBOSS-fuzznuc-on-Swoose/ - Oct 01 2023 12:07:57 AM
2019-08-26-Data-Wrangling---Panopea-generosa-Genome-Feature-Sequence-Lengths/2019-08-26-Data-Wrangling---Panopea-generosa-Genome-Feature-Sequence-Lengths/ - Oct 01 2023 12:07:56 AM
2019-09-04-Data-Wrangling---Pgenerosa_v074.a3-Annotation-Genome-Feature-Sequence-Lengths/2019-09-04-Data-Wrangling---Pgenerosa_v074.a3-Annotation-Genome-Feature-Sequence-Lengths/ - Oct 01 2023 12:07:55 AM
2019-09-05-Data-Wrangling---Pgenerosa_v074.a3-Annotation-Genome-Repeats-Compostion/2019-09-05-Data-Wrangling---Pgenerosa_v074.a3-Annotation-Genome-Repeats-Compostion/ - Oct 01 2023 12:07:53 AM
2019-09-18-SRA-Submission---Hollie's-Juvenile-OA-BS-seq-Data/2019-09-18-SRA-Submission---Hollie's-Juvenile-OA-BS-seq-Data/ - Oct 01 2023 12:07:52 AM
2019-09-23-TrimmingFastqcMultiQC---P.generosa-EPI-FastQs-with-FASTP-on-Mox/2019-09-23-TrimmingFastqcMultiQC---P.generosa-EPI-FastQs-with-FASTP-on-Mox/ - Oct 01 2023 12:07:50 AM
2019-09-25-Metagenomics-Annotation---P.generosa-Water-Samples-Using-DIAMOND-BLASTx-on-Mox/2019-09-25-Metagenomics-Annotation---P.generosa-Water-Samples-Using-DIAMOND-BLASTx-on-Mox/ - Oct 01 2023 12:07:49 AM
2019-09-28-Genome-Annotation---Pgenerosa_v074-a4-Using-GenSAS/2019-09-28-Genome-Annotation---Pgenerosa_v074-a4-Using-GenSAS/ - Oct 01 2023 12:07:48 AM
2019-10-03-Data-Received---C.bairdi-RNAseq-Day9-12-26-Infected-Uninfected/2019-10-03-Data-Received---C.bairdi-RNAseq-Day9-12-26-Infected-Uninfected/ - Oct 01 2023 12:07:46 AM
2019-10-14-Metagenomics-Annotation---P.generosa-Water-Samples-with-MEGAN6/2019-10-14-Metagenomics-Annotation---P.generosa-Water-Samples-with-MEGAN6/ - Oct 01 2023 12:07:46 AM
2019-10-22-Lab-Maintenance---Cluster-UPS-Battery-Replacement/2019-10-22-Lab-Maintenance---Cluster-UPS-Battery-Replacement/ - Oct 01 2023 12:07:45 AM
2019-10-24-Data-Received---C.bairdi-RNAseq-Day9-12-26-Infected-Uninfected/2019-10-24-Data-Received---C.bairdi-RNAseq-Day9-12-26-Infected-Uninfected/ - Oct 01 2023 12:07:43 AM
2019-10-24-FastQC-MultiQC---C.bairdi-RNAseq-Day-12-26-Infected-Uninfected/2019-10-24-FastQC-MultiQC---C.bairdi-RNAseq-Day-12-26-Infected-Uninfected/ - Oct 01 2023 12:07:42 AM
2019-10-29-Genome-Feature-Counts---Panopea-generosa-vv0.74.a4/2019-10-29-Genome-Feature-Counts---Panopea-generosa-vv0.74.a4/ - Oct 01 2023 12:07:41 AM
2019-10-30-Data-Wrangling---Create-Panopea-generosa-vv0.74.a4-Intron-and-Intergenic-BED-Files/2019-10-30-Data-Wrangling---Create-Panopea-generosa-vv0.74.a4-Intron-and-Intergenic-BED-Files/ - Oct 01 2023 12:07:40 AM
2019-10-30-Samples-Received---Marinelli-Shellfish-Company-C.gigas-and-C.sikamea-Oysters/2019-10-30-Samples-Received---Marinelli-Shellfish-Company-C.gigas-and-C.sikamea-Oysters/ - Oct 01 2023 12:07:39 AM
2019-10-31-Data-Wrangling---Splitting-BAM-by-Size-for-Upload-to-OSF/2019-10-31-Data-Wrangling---Splitting-BAM-by-Size-for-Upload-to-OSF/ - Oct 01 2023 12:07:38 AM
2019-11-05-Data-Wrangling---Rename-Pgenerosa_v074-Files-and-Scaffolds/2019-11-05-Data-Wrangling---Rename-Pgenerosa_v074-Files-and-Scaffolds/ - Oct 01 2023 12:07:37 AM
2019-11-06-Data-Wrangling---Additional-Features-Stats-for-Panopea-generosa-v1.0/2019-11-06-Data-Wrangling---Additional-Features-Stats-for-Panopea-generosa-v1.0/ - Oct 01 2023 12:07:35 AM
2019-11-19-DNA-Isolation-and-Quantification---Crassostrea-gigas-and-Crassostrea-sikamea-Mantle-Tissue-from-Marinelli-Shellfish-Company/2019-11-19-DNA-Isolation-and-Quantification---Crassostrea-gigas-and-Crassostrea-sikamea-Mantle-Tissue-from-Marinelli-Shellfish-Company/ - Oct 01 2023 12:07:34 AM
2019-11-19-PCR---Crassostrea-gigas-and-sikamea-Mantle-gDNA-from-Marinelli-Shellfish-Company/2019-11-19-PCR---Crassostrea-gigas-and-sikamea-Mantle-gDNA-from-Marinelli-Shellfish-Company/ - Oct 01 2023 12:07:33 AM
2019-11-20-Data-Wrangling---Rename-Pgenerosa_v074-Bismark-Coverage-Files-Scaffold-Names/2019-11-20-Data-Wrangling---Rename-Pgenerosa_v074-Bismark-Coverage-Files-Scaffold-Names/ - Oct 01 2023 12:07:32 AM
2019-11-21-PCR---Crassostrea-gigas-and-sikamea-Mantle-gDNA-from-Marinelli-Shellfish-Company/2019-11-21-PCR---Crassostrea-gigas-and-sikamea-Mantle-gDNA-from-Marinelli-Shellfish-Company/ - Oct 01 2023 12:07:30 AM
2019-11-21-PCR---Crassostrea-gigas-and-sikamea-Mantle-gDNA-from-Marinellie-Shellfish-Company---No-Multiplex/2019-11-21-PCR---Crassostrea-gigas-and-sikamea-Mantle-gDNA-from-Marinellie-Shellfish-Company---No-Multiplex/ - Oct 01 2023 12:07:29 AM
2019-11-25-RNA-Isolation-and-Quantification---Geoduck-hemolymph-and-hemocyte-samples/2019-11-25-RNA-Isolation-and-Quantification---Geoduck-hemolymph-and-hemocyte-samples/ - Oct 01 2023 12:07:28 AM
2019-11-26-Reverse-Transcription---P.generosa-DNased-Hemolypmh-and-Hemocyte-RNA-from-20191125/2019-11-26-Reverse-Transcription---P.generosa-DNased-Hemolypmh-and-Hemocyte-RNA-from-20191125/ - Oct 01 2023 12:07:26 AM
2019-11-27-qPCR---Geoduck-hemolymph-and-hemocyte-cDNA-with-vitellogenin-primers/2019-11-27-qPCR---Geoduck-hemolymph-and-hemocyte-cDNA-with-vitellogenin-primers/ - Oct 01 2023 12:07:24 AM
2019-11-27-Samples-Received---C.bairdi-Hemolymph-and-Tissue-in-Ethanol-from-Pam-Jensen/2019-11-27-Samples-Received---C.bairdi-Hemolymph-and-Tissue-in-Ethanol-from-Pam-Jensen/ - Oct 01 2023 12:07:23 AM
2019-12-03-Data-Wrangling---Renaming,-Splitting,-and-Feature-Counts-of-Updated-Pgenerosa_v074-GenSAS-Merged-GFF/2019-12-03-Data-Wrangling---Renaming,-Splitting,-and-Feature-Counts-of-Updated-Pgenerosa_v074-GenSAS-Merged-GFF/ - Oct 01 2023 12:07:20 AM
2019-12-03-PCR---Crassostrea-gigas-and-sikamea-Mantle-gDNA-from-Marinelli-Shellfish-Company/2019-12-03-PCR---Crassostrea-gigas-and-sikamea-Mantle-gDNA-from-Marinelli-Shellfish-Company/ - Oct 01 2023 12:07:22 AM
2019-12-10-Samples-Received---Pacific-Oyster-Tissues-from-Hawaii-Maria-Haws-from-High-and-Low-pCO2/2019-12-10-Samples-Received---Pacific-Oyster-Tissues-from-Hawaii-Maria-Haws-from-High-and-Low-pCO2/ - Oct 01 2023 12:07:19 AM
2019-12-14-Data-Wrangling---Olurida_v081-UTR-GFFs-and-Intergenic,-Intron-BED-files/2019-12-14-Data-Wrangling---Olurida_v081-UTR-GFFs-and-Intergenic,-Intron-BED-files/ - Oct 01 2023 12:07:18 AM
2019-12-18-Transcriptome-Assembly---C.bairdi-Trimmed-RNAseq-Using-Trinity-on-Mox/2019-12-18-Transcriptome-Assembly---C.bairdi-Trimmed-RNAseq-Using-Trinity-on-Mox/ - Oct 01 2023 12:07:15 AM
2019-12-18-TrimmingFastQCMultiQC---C.bairdi-RNAseq-FastQ-with-fastp-on-Mox/2019-12-18-TrimmingFastQCMultiQC---C.bairdi-RNAseq-FastQ-with-fastp-on-Mox/ - Oct 01 2023 12:07:17 AM
2019-12-20-Transdecoder---C.bairdi-De-Novo-Transcriptome-from-20191218-on-Mox/2019-12-20-Transdecoder---C.bairdi-De-Novo-Transcriptome-from-20191218-on-Mox/ - Oct 01 2023 12:07:15 AM
2019-12-24-Transcriptome-Annotation---C.bairdi-Trinity-Assembly-BLASTx-on-Mox/2019-12-24-Transcriptome-Annotation---C.bairdi-Trinity-Assembly-BLASTx-on-Mox/ - Oct 01 2023 12:07:13 AM
2019-12-25-Transcriptome-Annotation---C.bairdi-Trinity-Assembly-Trinotate-on-Mox/2019-12-25-Transcriptome-Annotation---C.bairdi-Trinity-Assembly-Trinotate-on-Mox/ - Oct 01 2023 12:07:12 AM
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