Directory Listing of /trilobite/notebooks/sam/robertslab.github.io/sams-notebook/posts/2021/

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2021-01-12-Samples-Submitted---M.magister-MBD-BSseq-Libraries-to-Univ.-of-Oregon-GC3F/2021-01-12-Samples-Submitted---M.magister-MBD-BSseq-Libraries-to-Univ.-of-Oregon-GC3F/ - Oct 01 2023 12:03:37 AM
2021-02-01-Data-Received---Anthopleura-elegantissima---aggregating-anenome---NanoPore-Genome-Sequence-from-Jay-Dimond/2021-02-01-Data-Received---Anthopleura-elegantissima---aggregating-anenome---NanoPore-Genome-Sequence-from-Jay-Dimond/ - Oct 01 2023 12:03:35 AM
2021-02-09-SRA-Submission---A.elegantissima-ONT-Fast5-from-Jay-Dimond/2021-02-09-SRA-Submission---A.elegantissima-ONT-Fast5-from-Jay-Dimond/ - Oct 01 2023 12:03:34 AM
2021-02-26-Data-Wrangling---Gene-ID-Extraction-from-P.generosa-Genome-GFF-Using-Methylation-Machinery-Gene-IDs/2021-02-26-Data-Wrangling---Gene-ID-Extraction-from-P.generosa-Genome-GFF-Using-Methylation-Machinery-Gene-IDs/ - Oct 01 2023 12:03:32 AM
2021-02-26-Data-Wrangling---Gene-ID-Extraction-from-P.generosa-Genome-GFF-Using-Methylation-Machinery-List/2021-02-26-Data-Wrangling---Gene-ID-Extraction-from-P.generosa-Genome-GFF-Using-Methylation-Machinery-List/ - Oct 01 2023 12:03:33 AM
2021-03-08-Transcriptome-Assembly---Hematodinium-Transcriptomes-v1.6-and-v1.7-with-Trinity-on-Mox/2021-03-08-Transcriptome-Assembly---Hematodinium-Transcriptomes-v1.6-and-v1.7-with-Trinity-on-Mox/ - Oct 01 2023 12:03:30 AM
2021-03-09-Transcriptome-Annotation---Trinotate-Hematodinium-v1.6-on-Mox/2021-03-09-Transcriptome-Annotation---Trinotate-Hematodinium-v1.6-on-Mox/ - Oct 01 2023 12:03:29 AM
2021-03-09-Transcriptome-Annotation---Trinotate-Hematodinium-v1.7-on-Mox/2021-03-09-Transcriptome-Annotation---Trinotate-Hematodinium-v1.7-on-Mox/ - Oct 01 2023 12:03:28 AM
2021-03-12-DIAMOND-BLASTx---C.bairdi-RNAseq-vs-C.opilio-Genome-Proteins-on-Mox/2021-03-12-DIAMOND-BLASTx---C.bairdi-RNAseq-vs-C.opilio-Genome-Proteins-on-Mox/ - Oct 01 2023 12:03:27 AM
2021-03-16-Read-Extractions---C.bairdi-RNAseq-Reads-from-C.opilio-BLASTx-Matches-with-seqkit-on-Mox/2021-03-16-Read-Extractions---C.bairdi-RNAseq-Reads-from-C.opilio-BLASTx-Matches-with-seqkit-on-Mox/ - Oct 01 2023 12:03:26 AM
2021-03-17-Transcriptome-Assembly---C.bairdi-Transcriptome-v4.0-Using-Trinity-on-Mox/2021-03-17-Transcriptome-Assembly---C.bairdi-Transcriptome-v4.0-Using-Trinity-on-Mox/ - Oct 01 2023 12:03:24 AM
2021-03-17-Transcriptome-Assessment---BUSCO-Metazoa-on-C.bairdi-Transcriptome-v4.0-on-Mox/2021-03-17-Transcriptome-Assessment---BUSCO-Metazoa-on-C.bairdi-Transcriptome-v4.0-on-Mox/ - Oct 01 2023 12:03:23 AM
2021-03-17-TransDecoder---C.bairdi-Transcriptome-v4.0-on-Mox/2021-03-17-TransDecoder---C.bairdi-Transcriptome-v4.0-on-Mox/ - Oct 01 2023 12:03:22 AM
2021-03-18-Transcriptome-Annotation---DIAMOND-BLASTx-on-C.bairdi-Transcriptome-v4.0-on-Mox/2021-03-18-Transcriptome-Annotation---DIAMOND-BLASTx-on-C.bairdi-Transcriptome-v4.0-on-Mox/ - Oct 01 2023 12:03:21 AM
2021-03-18-Transcriptome-Annotation---Trinotate-on-C.bairdi-Transcriptome-v4.0-on-Mox/2021-03-18-Transcriptome-Annotation---Trinotate-on-C.bairdi-Transcriptome-v4.0-on-Mox/ - Oct 01 2023 12:03:20 AM
2021-04-01-Trimming-P.generosa-10x-Genomics-HiC-FastQs-with-fastp-on-Mox/2021-04-01-Trimming-P.generosa-10x-Genomics-HiC-FastQs-with-fastp-on-Mox/ - Oct 01 2023 12:03:19 AM
2021-04-15-Genome-Annotation---P.generosa-v1.0-Assembly-Using-BLASTn-for-BlobToolKit-on-Mox/2021-04-15-Genome-Annotation---P.generosa-v1.0-Assembly-Using-BLASTn-for-BlobToolKit-on-Mox/ - Oct 01 2023 12:03:18 AM
2021-04-15-Genome-Annotation---P.generosa-v1.0-Assembly-Using-DIAMOND-BLASTx-for-BlobToolKit-on-Mox/2021-04-15-Genome-Annotation---P.generosa-v1.0-Assembly-Using-DIAMOND-BLASTx-for-BlobToolKit-on-Mox/ - Oct 01 2023 12:03:16 AM
2021-04-15-Read-Mapping---10x-Genomics-Trimmed-FastQ-Mapped-to-P.generosa-v1.0-Assembly-Using-Minimap2-for-BlobToolKit-on-Mox/2021-04-15-Read-Mapping---10x-Genomics-Trimmed-FastQ-Mapped-to-P.generosa-v1.0-Assembly-Using-Minimap2-for-BlobToolKit-on-Mox/ - Oct 01 2023 12:03:15 AM
2021-04-23-Singularity---RStudio-Server-Container-on-Mox/2021-04-23-Singularity---RStudio-Server-Container-on-Mox/ - Oct 01 2023 12:03:14 AM
2021-05-04-RepeatMasker---C.gigas-Rosling-NCBI-Genome-GCA_902806645.1-on-Mox/2021-05-04-RepeatMasker---C.gigas-Rosling-NCBI-Genome-GCA_902806645.1-on-Mox/ - Oct 01 2023 12:03:13 AM
2021-05-13-Genome-Submission---Validation-of-Olurida_v081.fa-and-Annotated-GFFs-Prior-to-Submission-to-NCBI/2021-05-13-Genome-Submission---Validation-of-Olurida_v081.fa-and-Annotated-GFFs-Prior-to-Submission-to-NCBI/ - Oct 01 2023 12:03:11 AM
2021-05-18-Trimming---O.lurida-BGI-FastQs-with-FastP-on-Mox/2021-05-18-Trimming---O.lurida-BGI-FastQs-with-FastP-on-Mox/ - Oct 01 2023 12:03:10 AM
2021-05-20-Genome-Assembly---Olurida_v090-with-BGI-Illumina-and-PacBio-Hybrid-Using-Wengan-on-Mox/2021-05-20-Genome-Assembly---Olurida_v090-with-BGI-Illumina-and-PacBio-Hybrid-Using-Wengan-on-Mox/ - Oct 01 2023 12:03:10 AM
2021-05-21-Assembly-Assessment---Olurida_v090-Using-Quast-on-Swoose/2021-05-21-Assembly-Assessment---Olurida_v090-Using-Quast-on-Swoose/ - Oct 01 2023 12:03:09 AM
2021-05-21-Assembly-Comparisons---Ostrea-lurida-Non-scaffold-Genome-Assembly-Comparisons-Using-Quast-on-Swoose/2021-05-21-Assembly-Comparisons---Ostrea-lurida-Non-scaffold-Genome-Assembly-Comparisons-Using-Quast-on-Swoose/ - Oct 01 2023 12:03:07 AM
2021-05-28-Data-Received---Yaaminis-C.virginica-WGBS-and-RNAseq-Data-from-ZymoResearch/2021-05-28-Data-Received---Yaaminis-C.virginica-WGBS-and-RNAseq-Data-from-ZymoResearch/ - Oct 01 2023 12:03:06 AM
2021-06-01-Data-Wrangling---S.salar-Gene-Annotations-from-NCBI-RefSeq-GCF_000233375.1_ICSASG_v2_genomic.gff-for-Shelly/2021-06-01-Data-Wrangling---S.salar-Gene-Annotations-from-NCBI-RefSeq-GCF_000233375.1_ICSASG_v2_genomic.gff-for-Shelly/ - Oct 01 2023 12:03:06 AM
2021-06-29-FastQC-MultiQC---Yaaminis-C.virginica-RNAseq-and-WGBS-from-ZymoResearch-on-Mox/2021-06-29-FastQC-MultiQC---Yaaminis-C.virginica-RNAseq-and-WGBS-from-ZymoResearch-on-Mox/ - Oct 01 2023 12:03:04 AM
2021-07-12-Genome-Analysis---Identification-of-Potential-Contaminating-Sequences-in-Panopea-generosa-v1.0-Assembly-Using-BlobToolKit-on-Mox/2021-07-12-Genome-Analysis---Identification-of-Potential-Contaminating-Sequences-in-Panopea-generosa-v1.0-Assembly-Using-BlobToolKit-on-Mox/ - Oct 01 2023 12:03:03 AM
2021-07-12-Summary---Geoduck-RNAseq-Data/2021-07-12-Summary---Geoduck-RNAseq-Data/ - Oct 01 2023 12:03:02 AM
2021-07-14-Trimming---C.virginica-Gonad-RNAseq-with-FastP-on-Mox/2021-07-14-Trimming---C.virginica-Gonad-RNAseq-with-FastP-on-Mox/ - Oct 01 2023 12:03:01 AM
2021-07-20-Genome-Annotations---Splice-Site-and-Exon-Extractions-for-C.virginica-GCF_002022765.2-Genome-Using-Hisat2-on-Mox/2021-07-20-Genome-Annotations---Splice-Site-and-Exon-Extractions-for-C.virginica-GCF_002022765.2-Genome-Using-Hisat2-on-Mox/ - Oct 01 2023 12:02:59 AM
2021-07-26-Transcript-Identification-and-Quantification---C.virginia-RNAseq-With-NCBI-Genome-GCF_002022765.2-Using-StringTie-on-Mox/2021-07-26-Transcript-Identification-and-Quantification---C.virginia-RNAseq-With-NCBI-Genome-GCF_002022765.2-Using-StringTie-on-Mox/ - Oct 01 2023 12:02:58 AM
2021-08-11-Uninterruptible-Power-Supply---Battery-Replacement-for-APS-BR1000G/2021-08-11-Uninterruptible-Power-Supply---Battery-Replacement-for-APS-BR1000G/ - Oct 01 2023 12:02:57 AM
2021-08-24-Computer-Management---Disable-Sleep-and-Hibernation-on-Raven/2021-08-24-Computer-Management---Disable-Sleep-and-Hibernation-on-Raven/ - Oct 01 2023 12:02:56 AM
2021-08-24-Computer-Servicing---APC-SUA2200RM2U-UPS-Battery-Replacement/2021-08-24-Computer-Servicing---APC-SUA2200RM2U-UPS-Battery-Replacement/ - Oct 01 2023 12:02:55 AM
2021-09-08-Assembly-Indexing---C.bairdi-Transcriptome-cbai_transcriptome_v3.1.fasta-with-Hisat2-on-Mox/2021-09-08-Assembly-Indexing---C.bairdi-Transcriptome-cbai_transcriptome_v3.1.fasta-with-Hisat2-on-Mox/ - Oct 01 2023 12:02:54 AM
2021-09-08-RNAseq-Alignments---C.bairdi-Day-2-Infected-Uninfected-Temperature-Increase-Decrease-RNAseq-to-cbai_transcriptome_v3.1.fasta-with-Hisat2-on-Mox/2021-09-08-RNAseq-Alignments---C.bairdi-Day-2-Infected-Uninfected-Temperature-Increase-Decrease-RNAseq-to-cbai_transcriptome_v3.1.fasta-with-Hisat2-on-Mox/ - Oct 01 2023 12:02:53 AM
2021-09-09-SNP-Identification---C.bairdi-Day-2-DEG-Pooled-Samples-Using-bcftools-on-Mox/2021-09-09-SNP-Identification---C.bairdi-Day-2-DEG-Pooled-Samples-Using-bcftools-on-Mox/ - Oct 01 2023 12:02:52 AM
2021-10-05-SNP-Characterization---C.bairdi-v3.1-Transcriptome-Assembly-and-Day2-DEG-Pooled-Samples-RNAseq-Data/2021-10-05-SNP-Characterization---C.bairdi-v3.1-Transcriptome-Assembly-and-Day2-DEG-Pooled-Samples-RNAseq-Data/ - Oct 01 2023 12:02:50 AM
2021-10-26-Differential-Transcript-Expression---C.virginica-Gonad-RNAseq-Using-Ballgown/2021-10-26-Differential-Transcript-Expression---C.virginica-Gonad-RNAseq-Using-Ballgown/ - Dec 22 2024 01:02:30 AM
2021-12-09-Data-Wrangling---C.virginica-NCBI-GCF_002022765.2-GFF-to-Gene-BED-File/2021-12-09-Data-Wrangling---C.virginica-NCBI-GCF_002022765.2-GFF-to-Gene-BED-File/ - Oct 01 2023 12:02:47 AM
2021-12-20-RNA-Isolation---O.nerka-Berdahl-Tissues/2021-12-20-RNA-Isolation---O.nerka-Berdahl-Tissues/ - Oct 01 2023 12:02:46 AM
2021-12-22-Project-Summary---O.nerka-Berdahl-Samples/2021-12-22-Project-Summary---O.nerka-Berdahl-Samples/ - Oct 01 2023 12:02:44 AM
2021-12-22-RNA-Isolation---M.trossulus-Foot-and-Phenol-Gland/2021-12-22-RNA-Isolation---M.trossulus-Foot-and-Phenol-Gland/ - Oct 01 2023 12:02:43 AM
2021-12-22-RNA-Isolation---O.nerka-Berdahl-Brain-Tissues/2021-12-22-RNA-Isolation---O.nerka-Berdahl-Brain-Tissues/ - Oct 01 2023 12:02:45 AM
2021-12-23-RNA-Isolation---M.trossulus-Phenol-Gland-and-Gill/2021-12-23-RNA-Isolation---M.trossulus-Phenol-Gland-and-Gill/ - Oct 01 2023 12:02:42 AM
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