Directory Listing of /trilobite/notebooks/sam/robertslab.github.io/sams-notebook/posts/2022/

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2022-01-09-RNA-Isolation---M.trossulus-Gill-and-Phenol-Gland/2022-01-09-RNA-Isolation---M.trossulus-Gill-and-Phenol-Gland/ - Oct 01 2023 12:02:41 AM
2022-01-10-RNA-Isolation---M.trossulus-Gill-and-Phenol-Gland/2022-01-10-RNA-Isolation---M.trossulus-Gill-and-Phenol-Gland/ - Oct 01 2023 12:02:40 AM
2022-01-11-RNA-Isolation---M.trossulus-Gill-and-Phenol-Gland/2022-01-11-RNA-Isolation---M.trossulus-Gill-and-Phenol-Gland/ - Oct 01 2023 12:02:38 AM
2022-01-12-RNA-Isolation---M.trossulus-Gill/2022-01-12-RNA-Isolation---M.trossulus-Gill/ - Oct 01 2023 12:02:37 AM
2022-01-12-RNA-Isolation---O.nerka-Berdahl-Brain-Tissues/2022-01-12-RNA-Isolation---O.nerka-Berdahl-Brain-Tissues/ - Oct 01 2023 12:02:36 AM
2022-01-13-Project-Summary---Matt-George-PSMFC-Mytilus-Byssus-Project/2022-01-13-Project-Summary---Matt-George-PSMFC-Mytilus-Byssus-Project/ - Oct 01 2023 12:02:35 AM
2022-01-19-Data-Received---C.virginica-OA-Larvae-DNA-Methylation-FastQs-from-Lotterhos-Lab/2022-01-19-Data-Received---C.virginica-OA-Larvae-DNA-Methylation-FastQs-from-Lotterhos-Lab/ - Oct 01 2023 12:02:35 AM
2022-01-27-Data-Wrangling---C.virginica-Gonad-RNAseq-Transcript-Counts-Per-Gene-Per-Sample-Using-Ballgown/2022-01-27-Data-Wrangling---C.virginica-Gonad-RNAseq-Transcript-Counts-Per-Gene-Per-Sample-Using-Ballgown/ - Oct 01 2023 12:02:34 AM
2022-01-31-RNAseq-Alignment---C.virginica-Adult-OA-Gonad-Data-to-GCF_002022765.2-Genome-Using-HISAT2-on-Mox/2022-01-31-RNAseq-Alignment---C.virginica-Adult-OA-Gonad-Data-to-GCF_002022765.2-Genome-Using-HISAT2-on-Mox/ - Oct 01 2023 12:02:33 AM
2022-02-07-Transcriptome-Assembly---Genome-guided-C.virginica-Adult-Gonad-OA-RNAseq-Using-Trinity-on-Mox/2022-02-07-Transcriptome-Assembly---Genome-guided-C.virginica-Adult-Gonad-OA-RNAseq-Using-Trinity-on-Mox/ - Oct 01 2023 12:02:31 AM
2022-02-17-Data-Wrangling---C.virginica-lncRNA-Extractions-from-NCBI-GCF_002022765.2-Using-GffRead/2022-02-17-Data-Wrangling---C.virginica-lncRNA-Extractions-from-NCBI-GCF_002022765.2-Using-GffRead/ - Oct 01 2023 12:02:31 AM
2022-02-24-Trimming---Additional-20bp-from-C.virginica-Gonad-RNAseq-with-fastp-on-Mox/2022-02-24-Trimming---Additional-20bp-from-C.virginica-Gonad-RNAseq-with-fastp-on-Mox/ - Oct 01 2023 12:02:30 AM
2022-02-25-Transcript-Identification-and-Alignments---C.virginica-RNAseq-with-NCBI-Genome-GCF_002022765.2-Using-Hisat2-and-Stringtie-on-Mox/2022-02-25-Transcript-Identification-and-Alignments---C.virginica-RNAseq-with-NCBI-Genome-GCF_002022765.2-Using-Hisat2-and-Stringtie-on-Mox/ - Oct 01 2023 12:02:29 AM
2022-03-01-Data-Wrangling---P.generosa-Genome-GFF-Conversion-to-GTF-Using-gffread/2022-03-01-Data-Wrangling---P.generosa-Genome-GFF-Conversion-to-GTF-Using-gffread/ - Oct 01 2023 12:02:28 AM
2022-03-02-Data-Analysis---C.virginica-RNAseq-Zymo-ZR4059-Analyzed-by-ZymoResearch/2022-03-02-Data-Analysis---C.virginica-RNAseq-Zymo-ZR4059-Analyzed-by-ZymoResearch/ - Oct 01 2023 12:02:26 AM
2022-03-02-Taxonomic-Assignment---C.virginica-BSseq-Unmapped-Reads-Using-DIAMOND-BLASTx-and-MEGAN6-on-Mox/2022-03-02-Taxonomic-Assignment---C.virginica-BSseq-Unmapped-Reads-Using-DIAMOND-BLASTx-and-MEGAN6-on-Mox/ - Oct 01 2023 12:02:27 AM
2022-03-09-Data-Analysis---C.virginica-BSseq-Unmapped-Reads-Using-MEGAN6/2022-03-09-Data-Analysis---C.virginica-BSseq-Unmapped-Reads-Using-MEGAN6/ - Oct 01 2023 12:02:25 AM
2022-03-23-Differential-Gene-Expression---P.generosa-DGE-Between-Tissues-Using-Nextlow-NF-Core-RNAseq-Pipeline-on-Mox/2022-03-23-Differential-Gene-Expression---P.generosa-DGE-Between-Tissues-Using-Nextlow-NF-Core-RNAseq-Pipeline-on-Mox/ - Oct 01 2023 12:02:24 AM
2022-03-24-Data-Wrangling---P.generosa-Genomic-Feature-FastA-Creation/2022-03-24-Data-Wrangling---P.generosa-Genomic-Feature-FastA-Creation/ - Oct 01 2023 12:02:23 AM
2022-03-25-Nextflow---Trials-and-Tribulations-of-Installing-and-Using-NF-Core-RNAseq/2022-03-25-Nextflow---Trials-and-Tribulations-of-Installing-and-Using-NF-Core-RNAseq/ - Oct 01 2023 12:02:21 AM
2022-04-02-Server-Maintenance---Fix-Server-Certificate-Authentication-Issues/2022-04-02-Server-Maintenance---Fix-Server-Certificate-Authentication-Issues/ - Oct 01 2023 12:02:20 AM
2022-04-11-RNA-Isolation---O.nerka-Berdahl-Brain-Tissues/2022-04-11-RNA-Isolation---O.nerka-Berdahl-Brain-Tissues/ - Oct 01 2023 12:02:19 AM
2022-04-19-Data-Wrangling---Create-Primary-P.generosa-Genome-Annotation-File/2022-04-19-Data-Wrangling---Create-Primary-P.generosa-Genome-Annotation-File/ - Oct 01 2023 12:02:17 AM
2022-04-25-Project-Summary---C.virginica-CEABIGR---Female-vs.-Male-Gonad-Exposed-to-OA/2022-04-25-Project-Summary---C.virginica-CEABIGR---Female-vs.-Male-Gonad-Exposed-to-OA/ - Oct 01 2023 12:02:16 AM
2022-06-15-SRA-Submission---Ostrea-lurida-MBD-BS-seq-from-20160203/2022-06-15-SRA-Submission---Ostrea-lurida-MBD-BS-seq-from-20160203/ - Oct 01 2023 12:02:15 AM
2022-06-22-Daily-Bits---June-2022/2022-06-22-Daily-Bits---June-2022/ - Oct 01 2023 12:02:13 AM
2022-07-05-Daily-Bits---July-2022/2022-07-05-Daily-Bits---July-2022/ - Oct 01 2023 12:02:13 AM
2022-07-06-SRA-Data---S.namaycush-SRA-BioProject-PRJNA674328-Download-and-QC/2022-07-06-SRA-Data---S.namaycush-SRA-BioProject-PRJNA674328-Download-and-QC/ - Oct 01 2023 12:02:11 AM
2022-07-25-BS-seq-and-SNP-Analysis---Nextflow-EpiDiverse-Pipelines-Trials-and-Tribulations/2022-07-25-BS-seq-and-SNP-Analysis---Nextflow-EpiDiverse-Pipelines-Trials-and-Tribulations/ - Oct 01 2023 12:02:10 AM
2022-07-26-RNA-Isolation-and-Quantification---Dorothy-Mussel-Gill-Samples/2022-07-26-RNA-Isolation-and-Quantification---Dorothy-Mussel-Gill-Samples/ - Oct 01 2023 12:02:09 AM
2022-07-27-qPCR---Dorothys-Mussel-cDNA-from-20220726/2022-07-27-qPCR---Dorothys-Mussel-cDNA-from-20220726/ - Oct 01 2023 12:02:08 AM
2022-08-03-Daily-Bits---August-2022/2022-08-03-Daily-Bits---August-2022/ - Oct 01 2023 12:02:07 AM
2022-08-04-qPCR---Repeat-of-Mussel-Gill-Heat-Stress-cDNA-with-Ferritin-Primers/2022-08-04-qPCR---Repeat-of-Mussel-Gill-Heat-Stress-cDNA-with-Ferritin-Primers/ - Oct 01 2023 12:02:06 AM
2022-08-10-Splice-Site-Identification---S.namaycush-Liver-Parasitized-and-Non-Parasitized-SRA-RNAseq-Using-Hisat2-Stingtie-with-Genome-GCF_016432855.1/2022-08-10-Splice-Site-Identification---S.namaycush-Liver-Parasitized-and-Non-Parasitized-SRA-RNAseq-Using-Hisat2-Stingtie-with-Genome-GCF_016432855.1/ - Oct 01 2023 12:02:05 AM
2022-08-18-Data-Wrangling---Convert-S.namaycush-NCBI-GFF-to-genes-only-BED-file-for-Use-in-Ballgown-Analysis/2022-08-18-Data-Wrangling---Convert-S.namaycush-NCBI-GFF-to-genes-only-BED-file-for-Use-in-Ballgown-Analysis/ - Oct 01 2023 12:02:04 AM
2022-08-29-FastQ-Trimming-and-QC---C.virginica-Larval-BS-seq-Data-from-Lotterhos-Lab-and-Part-of-CEABIGR-Project-Using-fastp-on-Mox/2022-08-29-FastQ-Trimming-and-QC---C.virginica-Larval-BS-seq-Data-from-Lotterhos-Lab-and-Part-of-CEABIGR-Project-Using-fastp-on-Mox/ - Oct 01 2023 12:02:03 AM
2022-09-02-Daily-Bits---September-2022/2022-09-02-Daily-Bits---September-2022/ - Oct 01 2023 12:02:02 AM
2022-09-08-FastQ-Trimming---Geoduck-RNAseq-Data-Using-fastp-on-Mox/2022-09-08-FastQ-Trimming---Geoduck-RNAseq-Data-Using-fastp-on-Mox/ - Oct 01 2023 12:02:01 AM
2022-09-14-RNAseq-Alignments---P.generosa-Alignments-and-Alternative-Transcript-Identification-Using-Hisat2-and-StringTie-on-Mox/2022-09-14-RNAseq-Alignments---P.generosa-Alignments-and-Alternative-Transcript-Identification-Using-Hisat2-and-StringTie-on-Mox/ - Oct 01 2023 12:02:00 AM
2022-09-20-Data-Wrangling---Identify-C.virginica-Genes-with-Different-Predominant-Isoforms-for-CEABIGR/2022-09-20-Data-Wrangling---Identify-C.virginica-Genes-with-Different-Predominant-Isoforms-for-CEABIGR/ - Oct 01 2023 12:01:59 AM
2022-09-21-BSseq-SNP-Analysis---Nextflow-EpiDiverse-SNP-Pipeline-for-C.virginica-CEABIGR-BSseq-data/2022-09-21-BSseq-SNP-Analysis---Nextflow-EpiDiverse-SNP-Pipeline-for-C.virginica-CEABIGR-BSseq-data/ - Oct 01 2023 12:01:57 AM
2022-09-26-Data-Wrangling---C.virginica-NCBI-GCF_002022765.2-GFF-to-Gene-and-Pseudogene-Combined-BED-File/2022-09-26-Data-Wrangling---C.virginica-NCBI-GCF_002022765.2-GFF-to-Gene-and-Pseudogene-Combined-BED-File/ - Oct 01 2023 12:01:56 AM
2022-10-01-Daily-Bits---October-2022/2022-10-01-Daily-Bits---October-2022/ - Oct 01 2023 12:01:55 AM
2022-11-01-Daily-Bits---November-2022/2022-11-01-Daily-Bits---November-2022/ - Oct 01 2023 12:01:54 AM
2022-12-01-Daily-Bits---December-2022/2022-12-01-Daily-Bits---December-2022/ - Oct 01 2023 12:01:54 AM
2022-12-14-BS-Seq-Analysis---Nextflow-EpiDiverse-SNP-Pipeline-for-Haws-Hawaii-C.gigas-BAMs-from-Yaamini/2022-12-14-BS-Seq-Analysis---Nextflow-EpiDiverse-SNP-Pipeline-for-Haws-Hawaii-C.gigas-BAMs-from-Yaamini/ - Oct 01 2023 12:01:53 AM
2022-12-15-BS-Seq-Analysis---Nextflow-EpiDiverse-SNP-Pipeline-for-Haws-Hawaii-C.gigas-BAMs-from-Yaamini-Base-Config/2022-12-15-BS-Seq-Analysis---Nextflow-EpiDiverse-SNP-Pipeline-for-Haws-Hawaii-C.gigas-BAMs-from-Yaamini-Base-Config/ - Oct 01 2023 12:01:51 AM
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