Directory Listing of /trilobite/notebooks/sam/robertslab.github.io/sams-notebook/posts/2025/

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2025-01-02-Bismark-Alignments---A.pulchra-Trimmed-Reads-Using-Bismark-on-Hyak/2025-01-02-Bismark-Alignments---A.pulchra-Trimmed-Reads-Using-Bismark-on-Hyak/ - Jan 12 2025 12:00:34 AM
2025-01-02-Bismark-Alignments---A.pulchra-UNTRIMMED-Reads-Using-Bismark-on-Hyak/2025-01-02-Bismark-Alignments---A.pulchra-UNTRIMMED-Reads-Using-Bismark-on-Hyak/ - Jan 05 2025 12:00:35 AM
2025-01-02-Bisulfite-Genome---A.pulchra-BS-Genome-Using-Bismark/2025-01-02-Bisulfite-Genome---A.pulchra-BS-Genome-Using-Bismark/ - Jan 05 2025 12:00:33 AM
2025-01-02-Trimming---A.pulchra-WGBS-with-fastp-FastQC-and-MultiQC-on-Raven/2025-01-02-Trimming---A.pulchra-WGBS-with-fastp-FastQC-and-MultiQC-on-Raven/ - Jan 05 2025 12:00:38 AM
2025-01-10-Data-Wrangling---Reformat-P.evermanni-GFF-to-Valid-GFF3-Using-awk-and-genomtools/2025-01-10-Data-Wrangling---Reformat-P.evermanni-GFF-to-Valid-GFF3-Using-awk-and-genomtools/ - Jan 12 2025 12:00:31 AM
2025-01-10-Data-Wrangling---Reformat-P.evermanni-GFF-to-Valid-GFF3-Using-awk-genometools-and-AGAT/2025-01-10-Data-Wrangling---Reformat-P.evermanni-GFF-to-Valid-GFF3-Using-awk-genometools-and-AGAT/ - Feb 02 2025 12:00:44 AM
2025-01-14-Data-Wrangling---Reformat-P.tuahiniensis-GFF-to-Valid-GFF3-Using-awk-genometools-and-AGAT/2025-01-14-Data-Wrangling---Reformat-P.tuahiniensis-GFF-to-Valid-GFF3-Using-awk-genometools-and-AGAT/ - Mar 16 2025 12:01:21 AM
2025-01-17-Primer-Design---C.gigas-Alternative-Oxidase-AOX-Variants-Using-Primer3/2025-01-17-Primer-Design---C.gigas-Alternative-Oxidase-AOX-Variants-Using-Primer3/ - Jan 26 2025 12:44:59 AM
2025-01-29-Bisulfite-Genome---P.evermanni-BS-Genome-Using-Bismark/2025-01-29-Bisulfite-Genome---P.evermanni-BS-Genome-Using-Bismark/ - Feb 02 2025 12:00:39 AM
2025-01-29-Bisulfite-Genome---P.tuahiniensis-BS-Genome-Using-Bismark/2025-01-29-Bisulfite-Genome---P.tuahiniensis-BS-Genome-Using-Bismark/ - Feb 02 2025 12:00:40 AM
2025-01-30-Computer-Management---Fix-Most-of-Raven-Boot-Issues/2025-01-30-Computer-Management---Fix-Most-of-Raven-Boot-Issues/ - Feb 02 2025 12:00:37 AM
2025-01-31-Differential-Expression---R.philippinarum-miRNAs-Using-DEseq2/2025-01-31-Differential-Expression---R.philippinarum-miRNAs-Using-DEseq2/ - Feb 09 2025 12:00:43 AM
2025-02-03-Data-Received---E5-Coral-WGBS-from-Genohub-Project-2216545-Using-Rclone-on-Owl/2025-02-03-Data-Received---E5-Coral-WGBS-from-Genohub-Project-2216545-Using-Rclone-on-Owl/ - Feb 09 2025 12:00:41 AM
2025-02-06-FastQC-MultiQC---A.pulchra-WGBS-E5-Deep-Dive-Expression/2025-02-06-FastQC-MultiQC---A.pulchra-WGBS-E5-Deep-Dive-Expression/ - Feb 09 2025 12:00:40 AM
2025-02-06-FastQC-MultiQC---P.evermanni-WGBS-E5-Deep-Dive-Expression/2025-02-06-FastQC-MultiQC---P.evermanni-WGBS-E5-Deep-Dive-Expression/ - Feb 09 2025 12:45:12 AM
2025-02-06-FastQC-MultiQC---P.tuahiniensis-WGBS-E5-Deep-Dive-Expression/2025-02-06-FastQC-MultiQC---P.tuahiniensis-WGBS-E5-Deep-Dive-Expression/ - Feb 09 2025 12:45:11 AM
2025-02-10-FastQC-MultiQC---P.evermanni-Raw-WGBS-Renaming-and-FastQC-MultiQC-E5-timeseries_molecular-Project/2025-02-10-FastQC-MultiQC---P.evermanni-Raw-WGBS-Renaming-and-FastQC-MultiQC-E5-timeseries_molecular-Project/ - Feb 16 2025 12:00:42 AM
2025-02-10-FastQC-MultiQC---P.tuahiniensis-Raw-WGBS-Renaming-and-FastQC-MultiQC-timeseries_molecular-Project/2025-02-10-FastQC-MultiQC---P.tuahiniensis-Raw-WGBS-Renaming-and-FastQC-MultiQC-timeseries_molecular-Project/ - Feb 16 2025 12:00:40 AM
2025-02-12-Trimming---P.evermanni-WGBS-Trimming-and-QC-with-fastp-FastQC-and-MultiQC-for-E5-timeseries_molecular-Project/2025-02-12-Trimming---P.evermanni-WGBS-Trimming-and-QC-with-fastp-FastQC-and-MultiQC-for-E5-timeseries_molecular-Project/ - Feb 23 2025 12:45:11 AM
2025-02-12-Trimming---P.tuahiniensis-WGBS-Trimming-and-QC-with-fastp-FastQC-and-MultiQC-for-E5-timeseries_molecular-Project/2025-02-12-Trimming---P.tuahiniensis-WGBS-Trimming-and-QC-with-fastp-FastQC-and-MultiQC-for-E5-timeseries_molecular-Project/ - Feb 23 2025 12:45:13 AM
2025-02-20-DNA-Isolation-and-Quantification---S.namaycush-Liver/2025-02-20-DNA-Isolation-and-Quantification---S.namaycush-Liver/ - Feb 23 2025 12:00:38 AM
2025-02-20-FastQC-MultiQC---P.evermanni-RNA-seq-Data-for-timeseries_molecular-Project/2025-02-20-FastQC-MultiQC---P.evermanni-RNA-seq-Data-for-timeseries_molecular-Project/ - Mar 09 2025 12:45:54 AM
2025-02-20-FastQC-MultiQC---P.tuahiniensis-RNA-seq-Data-for-timeseries_molecular-Project/2025-02-20-FastQC-MultiQC---P.tuahiniensis-RNA-seq-Data-for-timeseries_molecular-Project/ - Mar 09 2025 12:45:55 AM
2025-02-24-Trimming---P.evermanni-RNA-seq-Trimming-and-QC-with-fastp-FastQC-and-MultiQC-for-E5-timeseries_molecular-Project/2025-02-24-Trimming---P.evermanni-RNA-seq-Trimming-and-QC-with-fastp-FastQC-and-MultiQC-for-E5-timeseries_molecular-Project/ - Mar 09 2025 12:45:46 AM
2025-02-24-Trimming---P.tuahiniensis-RNA-seq-Trimming-and-QC-with-fastp-FastQC-and-MultiQC-for-E5-timeseries_molecular-Project/2025-02-24-Trimming---P.tuahiniensis-RNA-seq-Trimming-and-QC-with-fastp-FastQC-and-MultiQC-for-E5-timeseries_molecular-Project/ - Mar 09 2025 12:45:50 AM
2025-02-26-Agarose-Gel---S.namaycush-Liver-gDNA-from-20250220/2025-02-26-Agarose-Gel---S.namaycush-Liver-gDNA-from-20250220/ - Mar 02 2025 12:00:42 AM
2025-03-07-Alignment---P.evermanni-RNA-seq-Data-from-E5-timeseries_molecular-Project-Using-Hisat2/2025-03-07-Alignment---P.evermanni-RNA-seq-Data-from-E5-timeseries_molecular-Project-Using-Hisat2/ - Mar 16 2025 12:00:39 AM
2025-03-07-Alignment---P.tuahiniensis-RNA-seq-Data-from-E5-timeseries_molecular-Project-Using-Hisat2/2025-03-07-Alignment---P.tuahiniensis-RNA-seq-Data-from-E5-timeseries_molecular-Project-Using-Hisat2/ - Mar 16 2025 12:00:38 AM
2025-03-07-Genome-Indexing---P.evermanni-Using-Hisat2-on-Raven/2025-03-07-Genome-Indexing---P.evermanni-Using-Hisat2-on-Raven/ - Mar 16 2025 12:00:36 AM
2025-03-07-Genome-Indexing---P.tuahiniensis-Using-Hisat2-on-Raven/2025-03-07-Genome-Indexing---P.tuahiniensis-Using-Hisat2-on-Raven/ - Mar 16 2025 12:00:37 AM
2025-03-10-DNA-Concentration---S.namaycush-DNA-from-20250220-Using-SpeedVac/2025-03-10-DNA-Concentration---S.namaycush-DNA-from-20250220-Using-SpeedVac/ - Mar 23 2025 12:00:39 AM
2025-03-25-DNA-and-RNA-Isolations-and-Quantification---G.macrocephalus-Blood-Using-Zymo-Quick-RNA-RNA-MiniPrep-Plus-Kit/2025-03-25-DNA-and-RNA-Isolations-and-Quantification---G.macrocephalus-Blood-Using-Zymo-Quick-RNA-RNA-MiniPrep-Plus-Kit/ - Mar 30 2025 12:00:40 AM
2025-03-28-Computer-Management---Install-Synology-Expansion-Unit-RX1217-for-Gannet/2025-03-28-Computer-Management---Install-Synology-Expansion-Unit-RX1217-for-Gannet/ - Apr 06 2025 12:45:35 AM
2025-03-31-Samples-Submitted---S.namaycush-Live-gDNA-to-Angie-Schmoldt-at-UW-Milwaukee/2025-03-31-Samples-Submitted---S.namaycush-Live-gDNA-to-Angie-Schmoldt-at-UW-Milwaukee/ - Apr 06 2025 12:00:40 AM
2025-04-02-DNA-RNA-Isolation-and-Quantification---G.macrocephalus-Blood-Using-Bullet-Blender-and-Zymo-Quick-DNA-RNA-MiniPrep-Plus-Kit/2025-04-02-DNA-RNA-Isolation-and-Quantification---G.macrocephalus-Blood-Using-Bullet-Blender-and-Zymo-Quick-DNA-RNA-MiniPrep-Plus-Kit/ - Apr 13 2025 12:45:45 AM
2025-04-02-DNA-RNA-Isolation-and-Quantification---G.macrocephalus-Blood-Using-Bullet-Blender-and-Zymo-Quick-DNA-RNA-MiniPrep-Plut-Kit/2025-04-02-DNA-RNA-Isolation-and-Quantification---G.macrocephalus-Blood-Using-Bullet-Blender-and-Zymo-Quick-DNA-RNA-MiniPrep-Plut-Kit/ - Apr 06 2025 12:45:28 AM
2025-04-10-DNA-RNA-Isolation-and-Quantification---G.macrocephalus-Blood-Using-Bullet-Blender-and-Zymo-Quick-DNA-RNA-MiniPrep-Plus-Kit/2025-04-10-DNA-RNA-Isolation-and-Quantification---G.macrocephalus-Blood-Using-Bullet-Blender-and-Zymo-Quick-DNA-RNA-MiniPrep-Plus-Kit/ - Apr 13 2025 12:00:49 AM
2025-04-18-FastQC-MultiQC---Yellow-Island-eDNA-Project/2025-04-18-FastQC-MultiQC---Yellow-Island-eDNA-Project/ - Apr 20 2025 12:00:42 AM
2025-04-18-Trimming---Yellow-Island-eDNA-FastQs-Using-Fastp-FastQC-and-MultiQC/2025-04-18-Trimming---Yellow-Island-eDNA-FastQs-Using-Fastp-FastQC-and-MultiQC/ - Apr 20 2025 12:00:39 AM
2025-04-24-Taxonomy-Assignment---Yellow-Island-2018-eDNA-Samples-Using-QIIME-2/2025-04-24-Taxonomy-Assignment---Yellow-Island-2018-eDNA-Samples-Using-QIIME-2/ - Apr 27 2025 12:00:42 AM
2025-04-25-DNA-RNA-Isolation-and-Quantification---G.macrocephalus-Blood-Using-Bullet-Blender-and-Zymo-Quick-DNA-RNA-MiniPrep-Plus-Kit/2025-04-25-DNA-RNA-Isolation-and-Quantification---G.macrocephalus-Blood-Using-Bullet-Blender-and-Zymo-Quick-DNA-RNA-MiniPrep-Plus-Kit/ - May 04 2025 12:00:48 AM
2025-04-28-DNA-RNA-Isolation-and-Quantification---G.macrocephalus-Blood-Using-Bullet-Blender-and-Zymo-Quick-DNA-RNA-MiniPrep/2025-04-28-DNA-RNA-Isolation-and-Quantification---G.macrocephalus-Blood-Using-Bullet-Blender-and-Zymo-Quick-DNA-RNA-MiniPrep/ - May 04 2025 12:46:55 AM
2025-04-29-DIAMOND-BLAST-Database---NCBI-NR-Database-and-Taxonomy-Nodes-on-Raven/2025-04-29-DIAMOND-BLAST-Database---NCBI-NR-Database-and-Taxonomy-Nodes-on-Raven/ - May 04 2025 12:00:42 AM
2025-05-02-DNA-RNA-Isolation-and-Quantification---G.macrocephalus-Blood-Using-Bullet-Blender-and-Zymo-Quick-DNA-RNA-MiniPrep/2025-05-02-DNA-RNA-Isolation-and-Quantification---G.macrocephalus-Blood-Using-Bullet-Blender-and-Zymo-Quick-DNA-RNA-MiniPrep/ - May 04 2025 12:46:48 AM
2025-05-12-RNA-Isolation---C.gigas-Lifestage-Carryover-Samples-Using-Direct-zol-RNA-MiniPrep-Plus-Kit/2025-05-12-RNA-Isolation---C.gigas-Lifestage-Carryover-Samples-Using-Direct-zol-RNA-MiniPrep-Plus-Kit/ - May 18 2025 12:00:51 AM
2025-05-12-Sample-Homogenization---C.gigas-Lifestage-Carryover-Samples-Using-TriZol-and-Bullet-Blender/2025-05-12-Sample-Homogenization---C.gigas-Lifestage-Carryover-Samples-Using-TriZol-and-Bullet-Blender/ - May 18 2025 12:00:53 AM
2025-05-13-RNA-Isolation---C.gigas-Lifestage-Carryover-Samples-Using-Direct-zol-RNA-MiniPrep-Plus-Kit/2025-05-13-RNA-Isolation---C.gigas-Lifestage-Carryover-Samples-Using-Direct-zol-RNA-MiniPrep-Plus-Kit/ - May 18 2025 12:00:49 AM
2025-05-13-RNA-Quantification---C.gigas-Lifestage-Carryover-RNA-Samples-Using-Qubit-High-Sensitivity-RNA-Assay/2025-05-13-RNA-Quantification---C.gigas-Lifestage-Carryover-RNA-Samples-Using-Qubit-High-Sensitivity-RNA-Assay/ - May 18 2025 12:00:50 AM
2025-05-16-Reverse-Transcription---C.gigas-Lifestage-Carryover-RNA/2025-05-16-Reverse-Transcription---C.gigas-Lifestage-Carryover-RNA/ - May 18 2025 12:00:47 AM
2025-05-27-qPCR---C.gigas-Alternative-Oxidases-Primer-Tests/2025-05-27-qPCR---C.gigas-Alternative-Oxidases-Primer-Tests/ - Jun 01 2025 12:46:10 AM
2025-06-03-qPCRs---C.gigas-Lifestage-Carryover-ATP_synthase-cGAS-citrate_synthase-and-VIPERIN/2025-06-03-qPCRs---C.gigas-Lifestage-Carryover-ATP_synthase-cGAS-citrate_synthase-and-VIPERIN/ - Jun 08 2025 12:46:12 AM
2025-06-09-qPCRs---C.gigas-Lifestage-Carryover-DNMT1-GAPDH-HSP70-and-HSP90/2025-06-09-qPCRs---C.gigas-Lifestage-Carryover-DNMT1-GAPDH-HSP70-and-HSP90/ - Jun 15 2025 12:46:14 AM
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