Directory Listing of /trilobite/notebooks/steven/eagle.fish.washington.edu/oyster/

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20120821_QE/20120821_QE/ - Oct 19 2015 09:31:27 PM
BEACON/BEACON/ - Oct 19 2015 09:31:39 PM
bioinformatics/bioinformatics/ - Oct 20 2015 04:57:56 AM
bioinfo_assignment_1/bioinfo_assignment_1/ - Oct 19 2015 09:32:06 PM
Brest/Brest/ - Oct 19 2015 09:32:25 PM
Dissertation/Dissertation/ - Oct 20 2015 05:11:37 AM
Emma's computer 011013/Emma's computer 011013/ - Oct 19 2015 09:34:05 PM
Emma's files/Emma's files/ - Oct 20 2015 05:11:52 AM
FA data/FA data/ - Oct 20 2015 05:20:19 AM
geoduck raw files/geoduck raw files/ - Nov 23 2015 11:21:06 AM
geoduck supp files/geoduck supp files/ - Nov 08 2015 11:45:57 PM
OA-MS/OA-MS/ - Oct 20 2015 12:13:25 AM
Oly Epigenetics/Oly Epigenetics/ - Oct 20 2015 12:13:32 AM
oyster photos/oyster photos/ - Oct 20 2015 12:13:50 AM
oyster videos/oyster videos/ - Oct 20 2015 12:14:43 AM
proteomics/proteomics/ - Oct 20 2015 06:23:31 AM
pseudo_nitzschia/pseudo_nitzschia/ - Oct 20 2015 02:37:43 AM
101B1_final.jpg101B1_final.jpg 175KB Jan 21 2013 03:03:16 PM101B1_final.jpg
allCGs_joined_to_mRNAallCGs_joined_to_mRNA 1867KB Feb 14 2013 11:43:45 AM
ambient pCO2 upreg GO slim 121412.jpgambient pCO2 upreg GO slim 121412.jpg 85KB Dec 14 2012 11:18:49 AMambient pCO2 upreg GO slim 121412.jpg
average-linkage dend, all isotigs 121312.jpgaverage-linkage dend, all isotigs 121312... 67KB Dec 14 2012 09:40:11 AMaverage-linkage dend, all isotigs 121312.jpg
average-linkage dend, all isotigs 121312.pdfaverage-linkage dend, all isotigs 121312... 115KB Dec 13 2012 04:10:24 PM
avg-linkage dend, no low abundance isotigs 121312.jpgavg-linkage dend, no low abundance isoti... 69KB Dec 14 2012 09:41:07 AMavg-linkage dend, no low abundance isotigs 121312.jpg
avg-linkage dend, no low abundance isotigs 121312.pdfavg-linkage dend, no low abundance isoti... 110KB Dec 13 2012 04:11:04 PM
biostats.Rbiostats.R 91KB Dec 31 2008 09:17:56 AM
blastn_isotigs_120412blastn_isotigs_120412 4213KB Dec 04 2012 03:48:05 PM
blastn_isotigs_120512blastn_isotigs_120512 4341KB Dec 05 2012 09:01:41 AM
blastx go slim annotation 010913.jpgblastx go slim annotation 010913.jpg 184KB Jan 09 2013 03:53:14 PMblastx go slim annotation 010913.jpg
blastx_outputblastx_output 1276KB Jan 09 2013 02:18:25 PM
BW RGR.jpgBW RGR.jpg 54KB May 28 2013 09:07:21 AMBW RGR.jpg
contig expression for multivariate.csvcontig expression for multivariate.csv 308KB Dec 13 2012 03:54:07 PM
dendrogram rpkm all 010413.jpgdendrogram rpkm all 010413.jpg 86KB Jan 04 2013 03:30:00 PMdendrogram rpkm all 010413.jpg
dendrogram rpkm no low 010713.jpgdendrogram rpkm no low 010713.jpg 69KB Jan 07 2013 10:51:24 AMdendrogram rpkm no low 010713.jpg
differential expression mod4.jpgdifferential expression mod4.jpg 278KB Feb 01 2013 01:31:37 PMdifferential expression mod4.jpg
diff exp rpkm 010413.jpgdiff exp rpkm 010413.jpg 159KB Jan 04 2013 01:40:13 PMdiff exp rpkm 010413.jpg
diff exp rpkm 010413.pdfdiff exp rpkm 010413.pdf 7183KB Jan 04 2013 01:39:07 PM
diff exp sigenae 121312.jpgdiff exp sigenae 121312.jpg 190KB Dec 14 2012 09:37:20 AMdiff exp sigenae 121312.jpg
diff exp sigenae 121312.pdfdiff exp sigenae 121312.pdf 1042KB Dec 13 2012 11:53:24 AM
diff reg GO Slim 121412.jpgdiff reg GO Slim 121412.jpg 89KB Dec 14 2012 11:18:32 AMdiff reg GO Slim 121412.jpg
enriched go slim loadings pie 020513.jpgenriched go slim loadings pie 020513.jpg 82KB Feb 05 2013 09:36:00 AMenriched go slim loadings pie 020513.jpg
FA protocol.pdfFA protocol.pdf 353KB Jan 10 2013 03:59:17 PM
FA transmethylation.pdfFA transmethylation.pdf 196KB Jan 21 2013 12:40:01 PM
glycogen 012814.jpgglycogen 012814.jpg 66KB Jan 28 2014 04:32:36 PMglycogen 012814.jpg
GO ANOSIM pCO2 and MS.jpgGO ANOSIM pCO2 and MS.jpg 101KB Dec 14 2012 09:58:43 AMGO ANOSIM pCO2 and MS.jpg
GO ANOSIM pCO2 and MS.pdfGO ANOSIM pCO2 and MS.pdf 116KB Dec 10 2012 04:03:22 PM
GO ANOSIM pCO2 only.jpgGO ANOSIM pCO2 only.jpg 99KB Dec 14 2012 09:58:00 AMGO ANOSIM pCO2 only.jpg
GO ANOSIM pCO2 only.pdfGO ANOSIM pCO2 only.pdf 98KB Dec 10 2012 04:02:49 PM
GO components NMDS with loadings.jpgGO components NMDS with loadings.jpg 98KB Dec 14 2012 09:59:30 AMGO components NMDS with loadings.jpg
GO components NMDS with loadings.pdfGO components NMDS with loadings.pdf 268KB Dec 10 2012 04:48:09 PM
GO components NMDS with polygons.jpgGO components NMDS with polygons.jpg 112KB Dec 14 2012 10:00:12 AMGO components NMDS with polygons.jpg
GO components NMDS with polygons.pdfGO components NMDS with polygons.pdf 226KB Dec 10 2012 04:49:42 PM
GO function NMDS with loadings.pdfGO function NMDS with loadings.pdf 378KB Dec 11 2012 10:19:28 AM
GO function NMDS with polygons.jpgGO function NMDS with polygons.jpg 116KB Dec 14 2012 09:44:57 AMGO function NMDS with polygons.jpg
GO function NMDS with polygons.pdfGO function NMDS with polygons.pdf 220KB Dec 11 2012 10:21:18 AM
GO NMDS with loadings.jpgGO NMDS with loadings.jpg 122KB Dec 14 2012 09:56:22 AMGO NMDS with loadings.jpg
GO NMDS with loadings.pdfGO NMDS with loadings.pdf 366KB Dec 10 2012 03:54:30 PM
GO NMDS with polygons.jpgGO NMDS with polygons.jpg 111KB Dec 14 2012 09:57:10 AMGO NMDS with polygons.jpg
GO NMDS with polygons.pdfGO NMDS with polygons.pdf 214KB Dec 10 2012 03:55:25 PM
GO proteomic NMDS polygons all treatments 013013.jpgGO proteomic NMDS polygons all treatment... 98KB Jan 31 2013 06:34:53 PMGO proteomic NMDS polygons all treatments 013013.jpg
GO proteomic NMDS polygons MS 013013.jpgGO proteomic NMDS polygons MS 013013.jpg 81KB Jan 31 2013 06:35:14 PMGO proteomic NMDS polygons MS 013013.jpg
GO proteomic NMDS polygons pCO2 013013.jpgGO proteomic NMDS polygons pCO2 013013.jpg 85KB Jan 31 2013 06:35:31 PMGO proteomic NMDS polygons pCO2 013013.jpg
GO proteomic NMDS with 0.01 loadings 013013.jpgGO proteomic NMDS with 0.01 loadings 013... 198KB Jan 31 2013 06:35:52 PMGO proteomic NMDS with 0.01 loadings 013013.jpg
GO Slim processes ANOSIM pCO2 and MS.jpgGO Slim processes ANOSIM pCO2 and MS.jpg 98KB Dec 14 2012 09:53:25 AMGO Slim processes ANOSIM pCO2 and MS.jpg
GO Slim processes ANOSIM pCO2 and MS.pdfGO Slim processes ANOSIM pCO2 and MS.pdf 116KB Dec 11 2012 10:59:54 AM
GO Slim processes ANOSIM pCO2.jpgGO Slim processes ANOSIM pCO2.jpg 99KB Dec 14 2012 09:52:31 AMGO Slim processes ANOSIM pCO2.jpg
GO Slim processes ANOSIM pCO2.pdfGO Slim processes ANOSIM pCO2.pdf 97KB Dec 11 2012 10:58:22 AM
GO Slim processes NMDS with loadings .jpgGO Slim processes NMDS with loadings .jpg 85KB Dec 14 2012 09:50:18 AMGO Slim processes NMDS with loadings .jpg
GO Slim processes NMDS with loadings.pdfGO Slim processes NMDS with loadings.pdf 237KB Dec 11 2012 10:55:22 AM
GO Slim processes NMDS with polygons.jpgGO Slim processes NMDS with polygons.jpg 103KB Dec 14 2012 09:51:23 AMGO Slim processes NMDS with polygons.jpg
GO Slim processes NMDS with polygons.pdfGO Slim processes NMDS with polygons.pdf 207KB Dec 11 2012 10:56:02 AM
heat map oysters on top 020113.jpgheat map oysters on top 020113.jpg 257KB Feb 01 2013 10:54:52 AMheat map oysters on top 020113.jpg
heat map treatment groups 020113.jpgheat map treatment groups 020113.jpg 202KB Feb 01 2013 11:09:51 AMheat map treatment groups 020113.jpg
high co2 MS_final.jpghigh co2 MS_final.jpg 185KB Jan 23 2013 01:23:55 PMhigh co2 MS_final.jpg
high pco2 enriched in MS.jpghigh pco2 enriched in MS.jpg 85KB Feb 07 2013 09:07:01 AMhigh pco2 enriched in MS.jpg
high pco2 enriched in MS.pdfhigh pco2 enriched in MS.pdf 59KB Feb 07 2013 09:14:23 AM
high pCO2 upreg GO Slim 121412.jpghigh pCO2 upreg GO Slim 121412.jpg 81KB Dec 14 2012 11:18:17 AMhigh pCO2 upreg GO Slim 121412.jpg
Joined PNitzschia Files.csvJoined PNitzschia Files.csv 2657KB Feb 10 2014 11:06:21 AM
low pco2 enriched response to MS.jpglow pco2 enriched response to MS.jpg 95KB Feb 07 2013 09:15:53 AMlow pco2 enriched response to MS.jpg
medip 011713.jpgmedip 011713.jpg 390KB Jan 21 2013 12:45:23 PMmedip 011713.jpg
medip Me vs unMe.jpgmedip Me vs unMe.jpg 54KB Jan 18 2013 11:37:50 AMmedip Me vs unMe.jpg
metagen_blastxmetagen_blastx 3241KB Feb 27 2013 08:51:03 AM
multivariate for RNA-Seq.Rmultivariate for RNA-Seq.R 2KB Dec 13 2012 04:59:11 PM
NANODROP oly epigenetics.xlsxNANODROP oly epigenetics.xlsx 62KB Feb 11 2013 03:24:56 PM
NMDS all isotigs 121312.jpgNMDS all isotigs 121312.jpg 46KB Dec 14 2012 09:42:17 AMNMDS all isotigs 121312.jpg
NMDS all isotigs 121312.pdfNMDS all isotigs 121312.pdf 118KB Dec 13 2012 04:48:08 PM
NMDS all proteins 120712.pdfNMDS all proteins 120712.pdf 692KB Dec 07 2012 01:27:57 PM
NMDS all proteins OT and QE 010813.jpgNMDS all proteins OT and QE 010813.jpg 94KB Jan 08 2013 02:36:07 PMNMDS all proteins OT and QE 010813.jpg
NMDS all proteins with loadings 122012.jpgNMDS all proteins with loadings 122012.jpg 306KB Dec 21 2012 08:49:39 AMNMDS all proteins with loadings 122012.jpg
NMDS all proteins with polygons 122012.jpgNMDS all proteins with polygons 122012.jpg 95KB Dec 21 2012 08:50:23 AMNMDS all proteins with polygons 122012.jpg
NMDS CO2 only 020413.jpgNMDS CO2 only 020413.jpg 62KB Feb 04 2013 09:38:23 AMNMDS CO2 only 020413.jpg
NMDS contigs no oyster D 121412.jpgNMDS contigs no oyster D 121412.jpg 51KB Dec 14 2012 10:35:58 AMNMDS contigs no oyster D 121412.jpg
NMDS GO for OT And QE loadings 010913.jpgNMDS GO for OT And QE loadings 010913.jpg 152KB Jan 09 2013 01:21:55 PMNMDS GO for OT And QE loadings 010913.jpg
NMDS GO for OT And QE polygons 010913.jpgNMDS GO for OT And QE polygons 010913.jpg 104KB Jan 09 2013 01:22:19 PMNMDS GO for OT And QE polygons 010913.jpg
NMDS GO no oyster D 121412.jpgNMDS GO no oyster D 121412.jpg 73KB Dec 14 2012 10:36:18 AMNMDS GO no oyster D 121412.jpg
NMDS GO processes loadings 122112.jpgNMDS GO processes loadings 122112.jpg 170KB Dec 21 2012 03:07:10 PMNMDS GO processes loadings 122112.jpg
NMDS GO processes polygons 122112.jpgNMDS GO processes polygons 122112.jpg 105KB Dec 21 2012 03:06:46 PMNMDS GO processes polygons 122112.jpg
NMDS GO slim no oyster D 121412.jpgNMDS GO slim no oyster D 121412.jpg 111KB Dec 14 2012 10:36:40 AMNMDS GO slim no oyster D 121412.jpg
NMDS GO slim processes loadings 122112.jpgNMDS GO slim processes loadings 122112.jpg 92KB Dec 21 2012 03:06:21 PMNMDS GO slim processes loadings 122112.jpg
NMDS GO slim processes polygons 122112.jpgNMDS GO slim processes polygons 122112.jpg 97KB Dec 21 2012 03:05:57 PMNMDS GO slim processes polygons 122112.jpg
NMDS loadings for transcriptomics 021413.rtfNMDS loadings for transcriptomics 021413... 236KB Feb 14 2013 01:37:29 PM
NMDS no high abundance 120712.jpgNMDS no high abundance 120712.jpg 105KB Dec 14 2012 10:04:19 AMNMDS no high abundance 120712.jpg
NMDS no high abundance 120712.pdfNMDS no high abundance 120712.pdf 267KB Dec 07 2012 02:21:47 PM
NMDS no low abundance 120712.jpgNMDS no low abundance 120712.jpg 211KB Dec 14 2012 10:02:13 AMNMDS no low abundance 120712.jpg
NMDS no low abundance 120712.pdfNMDS no low abundance 120712.pdf 700KB Dec 07 2012 02:21:32 PM
NMDS no low abundance isotigs 121312.jpgNMDS no low abundance isotigs 121312.jpg 72KB Dec 14 2012 09:43:26 AMNMDS no low abundance isotigs 121312.jpg
NMDS no low abundance isotigs 121312.pdfNMDS no low abundance isotigs 121312.pdf 155KB Dec 13 2012 04:53:49 PM
NMDS no low high abundance 120712.jpgNMDS no low high abundance 120712.jpg 105KB Dec 14 2012 10:01:20 AMNMDS no low high abundance 120712.jpg
NMDS no low high abundance 120712.pdfNMDS no low high abundance 120712.pdf 265KB Dec 07 2012 01:02:46 PM
NMDS skyline peptides log transformed 021413.jpgNMDS skyline peptides log transformed 02... 83KB Feb 14 2013 08:48:08 PMNMDS skyline peptides log transformed 021413.jpg
NMDS skyline proteins 021413.jpgNMDS skyline proteins 021413.jpg 74KB Feb 14 2013 08:47:42 PMNMDS skyline proteins 021413.jpg
OT histogram.jpgOT histogram.jpg 64KB Jan 09 2013 01:51:28 PMOT histogram.jpg
pearson correlation plot 011013.jpegpearson correlation plot 011013.jpeg 313KB Jan 10 2013 02:54:02 PMpearson correlation plot 011013.jpeg
project in France 010713.docxproject in France 010713.docx 69KB Jan 07 2013 01:51:38 PM
pvalues rpkm 010413.jpgpvalues rpkm 010413.jpg 105KB Jan 04 2013 01:40:37 PMpvalues rpkm 010413.jpg
pvalues sigenae 121312.jpgpvalues sigenae 121312.jpg 72KB Dec 14 2012 09:38:54 AMpvalues sigenae 121312.jpg
pvalues sigenae 121312.pdfpvalues sigenae 121312.pdf 97KB Dec 13 2012 11:53:35 AM
QE histogram .jpgQE histogram .jpg 64KB Jan 09 2013 01:58:47 PMQE histogram .jpg
RPKM all oysters.csvRPKM all oysters.csv 4726KB Feb 14 2013 02:30:37 PM
RPKM all oysters rounded.csvRPKM all oysters rounded.csv 3440KB Feb 01 2013 03:15:09 PM
rpkm analysis (Autosaved).Rrpkm analysis (Autosaved).R 4KB Feb 14 2013 02:41:56 PM
rpkm analysis.Rrpkm analysis.R 4KB Feb 01 2013 03:14:39 PM
rpkm nmds all transcripts 010413.jpgrpkm nmds all transcripts 010413.jpg 83KB Jan 04 2013 03:30:23 PMrpkm nmds all transcripts 010413.jpg
rpkm nmds no low transcripts 010713.jpgrpkm nmds no low transcripts 010713.jpg 68KB Jan 07 2013 10:51:45 AMrpkm nmds no low transcripts 010713.jpg
Skyline ambient pCO2 MS.csvSkyline ambient pCO2 MS.csv 15397KB Dec 12 2012 11:38:43 AM
Skyline ambient pCO2.csvSkyline ambient pCO2.csv 15475KB Dec 12 2012 11:27:05 AM
skyline heat map by protein 021413.jpgskyline heat map by protein 021413.jpg 194KB Feb 14 2013 08:48:30 PMskyline heat map by protein 021413.jpg
skyline heatmap log transformed 021313.jpgskyline heatmap log transformed 021313.jpg 168KB Feb 13 2013 12:21:16 PMskyline heatmap log transformed 021313.jpg
Skyline high pCO2 additions.csvSkyline high pCO2 additions.csv 16586KB Dec 11 2012 05:05:46 PM
Skyline high pCO2 MS.csvSkyline high pCO2 MS.csv 15138KB Dec 11 2012 05:02:50 PM
Skyline high pCO2.csvSkyline high pCO2.csv 13639KB Dec 11 2012 03:46:55 PM
skyling NMDS 020713.jpgskyling NMDS 020713.jpg 71KB Feb 07 2013 01:04:50 PMskyling NMDS 020713.jpg
t.test sig diff GO Slim 121412.jpgt.test sig diff GO Slim 121412.jpg 51KB Dec 14 2012 11:18:01 AMt.test sig diff GO Slim 121412.jpg
treatment comparison venn.jpgtreatment comparison venn.jpg 95KB Jan 23 2013 01:30:32 PMtreatment comparison venn.jpg
unique to high_MS response.pngunique to high_MS response.png 61KB Apr 29 2013 09:52:04 PMunique to high_MS response.png
unseminar big data 072513 ETS.pptxunseminar big data 072513 ETS.pptx 1515KB Jul 25 2013 09:31:19 AM
variance dispersion rpkm 010413.jpgvariance dispersion rpkm 010413.jpg 141KB Jan 04 2013 01:41:02 PMvariance dispersion rpkm 010413.jpg
variance estimation sigenae 121312.jpgvariance estimation sigenae 121312.jpg 161KB Dec 14 2012 09:34:34 AMvariance estimation sigenae 121312.jpg
variance estimation sigenae 121312.pdfvariance estimation sigenae 121312.pdf 730KB Dec 13 2012 11:52:31 AM
volcano plot 121412.jpgvolcano plot 121412.jpg 89KB Dec 14 2012 11:28:01 AMvolcano plot 121412.jpg
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