Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold150
Parameters: 2 7 7 80 10 50 500
Length:  1854615

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 642 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1739869--1739930
31
2.0
31
96
0
115
24
25
25
24
2.00
1739938--1739971
16
2.1
16
100
0
68
5
23
26
44
1.76
1764527--1764556
11
2.7
11
94
0
51
53
20
16
10
1.71
1764529--1764573
22
2.0
22
83
8
56
44
26
17
11
1.82
1775375--1775433
31
1.9
31
96
0
109
28
5
28
37
1.78
1776282--1776311
2
15.0
2
92
0
51
0
46
0
53
1.00
1776762--1776898
70
2.0
70
95
0
247
32
14
10
43
1.79
1778827--1778881
22
2.5
22
87
0
74
25
29
14
30
1.95
1778847--1778891
22
2.0
22
86
0
63
28
31
11
28
1.91
1780967--1781104
10
13.7
10
70
13
70
23
12
16
47
1.81
1781767--1781798
2
16.0
2
100
0
64
0
50
0
50
1.00
1792868--1792910
2
21.5
2
100
0
86
51
0
48
0
1.00
1797805--1798197
197
2.0
196
100
0
777
40
13
14
32
1.84
1800990--1801020
1
31.0
1
93
0
53
3
96
0
0
0.21
1804676--1804724
16
3.1
15
79
5
53
32
30
8
28
1.86
1807665--1807704
19
2.1
19
85
0
53
20
2
40
37
1.66
1807660--1808185
177
3.0
177
83
2
623
25
16
24
33
1.96
1809719--1809749
16
1.9
16
100
0
62
35
12
25
25
1.92
1810791--1810884
32
2.9
32
90
0
152
25
14
27
31
1.95
1817805--1817851
21
2.3
20
82
13
60
27
12
19
40
1.88
1818847--1818876
2
15.0
2
92
0
51
53
0
0
46
1.00
1818920--1818944
2
12.5
2
100
0
50
52
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1819158--1819198
2
20.5
2
100
0
82
48
0
51
0
1.00
1822042--1822205
50
3.3
50
89
8
237
28
15
12
43
1.83
1822441--1822494
2
27.0
2
96
0
99
1
48
0
50
1.11
1822782--1822873
45
2.0
45
95
0
166
40
16
11
31
1.85
1823184--1823226
2
21.5
2
100
0
86
0
51
0
48
1.00
1824318--1824365
24
2.0
24
100
0
96
37
8
25
29
1.85
1828457--1828487
1
31.0
1
100
0
62
100
0
0
0
0.00
1830843--1831121
101
2.7
100
90
5
409
43
18
20
18
1.89
1831789--1831828
11
3.6
11
89
0
62
50
22
10
17
1.76
1831789--1831843
11
5.0
11
81
0
56
47
25
12
14
1.80
1831789--1831843
22
2.5
22
84
0
65
47
25
12
14
1.80
1836881--1836916
14
2.6
14
91
8
56
61
0
13
25
1.33
1840452--1840504
27
2.0
26
96
0
88
35
3
3
54
1.36
1845325--1845364
2
20.0
2
100
0
80
0
0
50
50
1.00
1849311--1849537
113
2.0
113
99
0
445
31
12
18
37
1.89
1849537--1850085
273
2.0
267
93
2
938
41
14
9
34
1.78
1851532--1851608
40
2.0
37
89
5
109
29
22
5
41
1.75
1853128--1853164
2
18.5
2
100
0
74
0
51
0
48
1.00
1853235--1853277
2
21.5
2
100
0
86
0
51
0
48
1.00
1853103--1853321
113
2.0
107
94
5
384
21
28
10
39
1.86

Tables:   1   2   3   4   5   6

The End!