oyster.v9_M.fa.s52.2.7.7.80.10.50.500.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold149
Parameters: 2 7 7 80 10 50 500
Length:  1065560

Tables:   1   2   3   4   

This is table  4  of  4  ( 442 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
912432--912466	2	17.5	2	100	0	70	0	51	0	48	1.00
914135--914313	36	4.9	36	96	1	313	37	19	13	28	1.90
915105--915236	22	5.7	22	88	10	192	42	23	7	26	1.81
915135--915235	11	9.2	11	80	0	121	44	21	5	27	1.75
916494--916556	2	31.5	2	100	0	126	0	50	0	49	1.00
917173--917280	36	3.0	36	94	1	191	24	12	16	47	1.80
917568--917644	4	19.8	4	80	5	77	70	1	6	22	1.18
919330--919449	18	6.7	18	80	5	91	45	28	4	21	1.70
919343--919495	18	8.5	18	78	9	152	43	28	3	24	1.70
919343--919495	72	2.1	72	89	7	231	43	28	3	24	1.70
919475--919550	28	2.7	29	76	10	77	44	34	3	17	1.67
919697--920121	18	24.1	18	74	5	294	44	28	2	24	1.67
919827--920049	8	24.8	9	63	20	58	42	29	2	25	1.67
919824--920177	72	4.9	72	80	0	195	44	28	3	24	1.69
920344--920380	18	2.1	18	89	0	56	32	27	8	32	1.86
920404--920455	18	2.9	18	77	11	61	36	32	11	19	1.87
920402--920478	36	2.1	36	90	0	118	33	31	10	24	1.89
921621--921714	47	2.0	47	97	0	179	21	20	32	25	1.97
922991--923031	20	2.0	20	100	0	82	19	9	36	34	1.85
924526--924575	2	25.5	2	91	4	84	0	48	0	52	1.00
925449--925488	20	2.0	20	95	0	71	17	40	17	25	1.91
926003--927316	46	28.8	46	87	1	1577	16	19	23	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
928303--928338	2	18.0	2	100	0	72	0	50	0	50	1.00
930055--930097	2	21.5	2	85	0	59	41	4	0	53	1.21
930461--930557	24	3.8	24	76	16	81	15	2	14	68	1.31
931180--931596	21	18.7	21	67	17	200	37	14	13	33	1.86
931180--931688	45	11.3	45	90	5	778	37	14	13	33	1.86
931675--931817	24	6.0	24	88	6	200	37	17	12	32	1.87
938135--938187	4	13.2	4	95	0	79	0	30	18	50	1.47
938169--938225	2	28.5	2	92	0	96	0	45	3	50	1.18
938135--938221	8	11.1	8	90	4	88	0	36	12	50	1.41
938141--938227	12	7.4	12	87	5	97	0	37	11	50	1.39
938513--938622	44	2.5	44	84	0	148	29	17	28	25	1.97
938513--938624	22	5.1	22	71	8	102	28	16	27	26	1.97
939539--939596	2	29.0	2	100	0	116	50	0	50	0	1.00
939347--939826	251	1.9	250	99	0	933	33	19	27	18	1.96
939790--939826	2	18.5	2	100	0	74	51	0	48	0	1.00
940629--940693	20	3.3	20	64	20	55	24	32	15	27	1.95
940626--942045	39	36.9	39	80	6	1364	28	25	13	32	1.94
941189--941255	30	2.2	30	86	0	89	31	25	14	28	1.95
941225--941288	19	3.3	19	68	20	60	26	26	15	31	1.96
941417--941480	30	2.1	30	85	0	83	29	25	14	31	1.94
950686--950723	10	3.8	10	92	0	67	10	13	31	44	1.77
950686--950723	20	1.9	20	100	0	76	10	13	31	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
952123--952160	10	3.8	10	92	0	67	10	13	31	44	1.77
952123--952160	20	1.9	20	100	0	76	10	13	31	44	1.77
964311--965071	33	21.6	33	69	16	370	21	9	33	35	1.86
964319--965071	177	4.3	174	90	6	1128	21	9	33	35	1.86
964462--965062	105	5.7	105	77	13	392	21	9	33	35	1.86
964462--965063	72	8.5	71	77	14	422	21	9	33	35	1.86
964719--964865	78	1.9	78	88	2	224	22	10	34	32	1.88
973465--973745	112	2.5	112	98	0	544	33	19	19	27	1.96
974609--974662	11	4.9	11	95	0	99	29	9	33	27	1.88
974694--974722	11	2.6	11	100	0	58	31	10	31	27	1.90
974788--974819	11	2.9	11	95	0	55	34	9	28	28	1.88
974825--974863	11	3.6	11	82	6	53	30	23	7	38	1.83
978561--978590	2	15.0	2	92	0	51	0	0	46	53	1.00
981192--981223	9	3.6	9	95	0	55	12	0	43	43	1.42
983255--983438	98	1.9	98	87	2	271	34	16	20	28	1.94
983586--983631	22	2.0	24	87	8	69	41	15	4	39	1.67
996922--996946	12	2.1	12	100	0	50	56	0	0	44	0.99
998703--998738	18	2.0	18	94	0	63	25	11	11	52	1.69
999745--1000016	21	13.0	21	75	5	203	25	10	8	55	1.62
1000791--1001049	21	12.4	21	76	10	194	55	8	10	25	1.62
1010371--1010401	12	2.5	13	94	5	55	25	6	32	35	1.82
1012640--1012720	25	3.2	25	91	0	135	30	23	3	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1020689--1020760	2	36.0	2	91	0	117	1	50	1	47	1.18
1027190--1027240	2	25.5	2	100	0	102	49	0	50	0	1.00
1028011--1028071	2	30.5	2	96	0	113	49	1	49	0	1.10
1028528--1028627	40	2.5	40	98	0	191	34	11	17	38	1.84
1035843--1035893	4	12.8	4	91	0	57	39	25	33	1	1.67
1042362--1042453	21	4.4	21	78	10	98	23	18	18	39	1.92
1042365--1042453	42	2.1	42	87	4	126	23	17	19	39	1.92
1042530--1042689	21	7.7	21	84	1	196	37	20	14	28	1.91
1042743--1042825	42	2.0	42	90	0	130	27	14	14	43	1.84
1042742--1042825	21	4.0	21	75	6	80	27	14	15	42	1.85
1042919--1043012	21	4.5	21	77	5	82	42	14	14	27	1.86
1044722--1044770	21	2.3	21	85	0	62	38	14	24	22	1.91
1049460--1049593	21	6.4	21	70	5	83	44	14	23	16	1.85
1049470--1049569	42	2.4	42	86	6	132	44	18	24	14	1.86
1053988--1054035	8	6.1	8	85	2	53	37	25	37	0	1.56
1053988--1054035	12	4.1	12	89	2	53	37	25	37	0	1.56

Tables:   1   2   3   4

The End!