Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.04

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold1599
Parameters: 2 7 7 80 10 50 500
Length:  1324113

Tables:   1   2   3   4   

This is table  4  of  4  ( 404 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1185321--1185369
13
3.8
13
80
0
62
6
61
6
26
1.43
1185288--1185400
26
4.2
26
78
4
100
11
53
4
30
1.57
1185288--1185400
28
4.2
28
80
8
126
11
53
4
30
1.57
1185497--1185544
17
3.0
16
85
11
55
6
52
8
33
1.57
1185515--1185573
17
3.7
17
73
17
54
11
57
3
27
1.50
1185539--1185630
13
7.2
13
72
4
62
16
54
2
27
1.54
1185780--1185819
17
2.4
17
91
0
62
15
60
0
25
1.35
1185796--1186001
26
8.1
26
72
15
157
9
57
6
26
1.54
1185796--1185994
24
7.9
24
74
14
136
9
57
6
26
1.55
1190627--1190666
2
20.0
2
100
0
80
0
50
0
50
1.00
1190826--1190870
2
22.5
2
100
0
90
0
51
0
48
1.00
1209363--1209442
2
40.0
2
100
0
160
0
50
0
50
1.00
1213859--1213913
2
27.5
2
100
0
110
50
0
49
0
1.00
1213920--1213971
4
12.8
4
75
4
50
65
0
28
5
1.16
1213911--1213947
16
2.3
16
90
0
56
64
0
27
8
1.21
1213924--1213970
12
3.8
12
78
15
60
63
0
29
6
1.19
1213919--1213979
16
4.3
15
76
23
69
60
0
29
9
1.29
1218501--1218549
2
24.5
2
100
0
98
51
0
48
0
1.00
1231158--1231221
31
2.1
31
100
0
128
28
6
40
25
1.79
1240839--1240863
11
2.3
11
100
0
50
32
0
16
52
1.44
1255217--1255285
2
36.0
2
91
8
117
0
49
0
50
1.00
1259182--1259252
4
17.8
4
97
0
133
23
1
0
74
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1262309--1262338
15
1.9
16
93
6
53
40
26
30
3
1.72
1272890--1272977
44
2.0
44
97
0
167
40
7
9
42
1.66
1274609--1274638
13
2.3
13
94
0
51
36
16
16
30
1.91
1274851--1274897
21
2.2
22
96
3
87
21
19
21
38
1.94
1275009--1275106
10
9.4
10
87
7
142
35
39
9
15
1.79
1275009--1275164
21
7.5
21
83
9
178
37
34
8
18
1.82
1275008--1275164
31
5.0
32
83
8
189
37
34
8
19
1.83
1275008--1275164
52
3.0
53
83
8
196
37
34
8
19
1.83
1278188--1278306
2
58.0
2
83
9
127
47
2
45
5
1.38
1278231--1278295
17
3.7
17
92
8
112
44
4
41
9
1.57
1280661--1280745
11
8.0
11
92
7
149
15
9
37
37
1.80
1280661--1280745
21
4.0
21
96
3
145
15
9
37
37
1.80
1280661--1280744
32
2.7
32
98
1
161
14
9
38
38
1.78
1310069--1310133
20
3.1
21
77
16
80
21
16
38
23
1.93
1310041--1310114
28
3.1
22
75
19
69
24
13
35
27
1.93
1310313--1310352
17
2.3
17
91
4
62
40
27
2
30
1.70
1311861--1311891
7
4.4
7
91
0
53
0
25
41
32
1.56
1312097--1312851
168
4.5
168
90
1
1113
30
19
19
31
1.96
1316850--1316882
17
1.9
17
93
0
57
45
18
9
27
1.79
1317342--1317382
14
2.9
14
81
0
55
29
24
9
36
1.87
1318540--1318564
13
1.9
13
100
0
50
40
16
24
20
1.91
1320496--1321058
166
3.4
166
87
3
824
33
15
22
28
1.95

Tables:   1   2   3   4

The End!