Quality Trimming – C.gigas Larvae OA BS-Seq Data

Jupyter (IPython) Notebook: 20150414_C_gigas_Larvae_OA_Trimmomatic_FASTQC.ipynb

NBviewer: 20150414_C_gigas_Larvae_OA_Trimmomatic_FASTQC.ipynb

 

Trimmed FASTQC

400ppm Index – GCCAAT

20150414_trimmed_2212_lane2_GCCAAT_L002_R1_001_fastqc.html
20150414_trimmed_2212_lane2_GCCAAT_L002_R1_002_fastqc.html
20150414_trimmed_2212_lane2_GCCAAT_L002_R1_003_fastqc.html
20150414_trimmed_2212_lane2_GCCAAT_L002_R1_004_fastqc.html
20150414_trimmed_2212_lane2_GCCAAT_L002_R1_005_fastqc.html
20150414_trimmed_2212_lane2_GCCAAT_L002_R1_006_fastqc.html

1000ppm Index – CTTGTA

20150414_trimmed_2212_lane2_CTTGTA_L002_R1_001_fastqc.html
20150414_trimmed_2212_lane2_CTTGTA_L002_R1_002_fastqc.html
20150414_trimmed_2212_lane2_CTTGTA_L002_R1_003_fastqc.html
20150414_trimmed_2212_lane2_CTTGTA_L002_R1_004_fastqc.html

 

 

One comment

  1. Pingback: Bioinformatics – Trimmomatic/FASTQC on C.gigas Larvae OA NGS Data | Sam's Notebook

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