Last August, we made our initial submission of this paper to PeeJ.
Today, we re-submitted the revised manuscript.
The repo for this paper is here.
I’ve also submitted an updated pre-print. I will update this post when it is publicly accessible (it has to be approved by PeerJ staff before it becomes public).
UPDATE 20170703 – Updated pre-print is now available: https://peerj.com/preprints/1595/