Finally running some analysis on the output from my PyRad analysison 20160727.

I’m following Katherine Silliman’s Jupyter notebook (2bRAD Subset Population Structure Analysis.ipynb) as a guide.

The initial analysis (which isn’t much) is in the Jupyter notebook below. The analysis will be continued on a later date.

Jupyter notebook: 20161117_docker_oly_vcf_analysis.ipynb

I’ve embedded the notebook below, but it’s much easier to view (there are many lengthy commands/filenames that wrap lines in the embedded version below) the actual file linked above.